mRNA_H-paniculata_contig59870.13645.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59870.13645.1
Unique NamemRNA_H-paniculata_contig59870.13645.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59870.13645.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.430e-8
Identity = 28/72 (38.89%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    1 WFGLIDKYQNSSKQRRRILMRQLDGTTMKQNQDPDVFLARVFQLRDELAHMGEEVSEERLTDIVIEGLTDDY 216
            W  L  K+Q + + RRR L R+L+  TM+   DPD+F+  V+ L ++L  +G  V++E+L DI+++GL  +Y
Sbjct:  236 WKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEY 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59870.13645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE4.430e-838.89Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59870contigH-paniculata_contig59870:488..790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930661.4832091-CDS-H-paniculata_contig59870:487..7901622930661.4832091-CDS-H-paniculata_contig59870:487..790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59870 488..790 -
1691481394.455129-CDS-H-paniculata_contig59870:487..7901691481394.455129-CDS-H-paniculata_contig59870:487..790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59870 488..790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59870.13645.1prot_H-paniculata_contig59870.13645.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59870 488..790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59870.13645.1

>prot_H-paniculata_contig59870.13645.1 ID=prot_H-paniculata_contig59870.13645.1|Name=mRNA_H-paniculata_contig59870.13645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
WFGLIDKYQNSSKQRRRILMRQLDGTTMKQNQDPDVFLARVFQLRDELAH
MGEEVSEERLTDIVIEGLTDDYEQVKYNAERDPEFSLSEIEVTLRNMFAH
R
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mRNA from alignment at H-paniculata_contig59870:488..790-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59870.13645.1 ID=mRNA_H-paniculata_contig59870.13645.1|Name=mRNA_H-paniculata_contig59870.13645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig59870:488..790- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTTTGGCCTGATTGACAAGTATCAGAATTCATCCAAGCAGAGACGCCG
TATATTAATGCGGCAGCTTGACGGGACAACAATGAAGCAAAACCAGGACC
CCGATGTATTTTTGGCCCGTGTTTTTCAGCTCAGGGATGAGCTAGCACAC
ATGGGGGAAGAAGTATCGGAAGAACGATTGACCGATATTGTTATAGAAGG
ACTTACTGACGATTATGAGCAAGTGAAATATAATGCAGAGCGCGACCCCG
AGTTTAGCTTGAGCGAAATTGAGGTCACTCTGCGTAATATGTTTGCGCAT
CGT
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Coding sequence (CDS) from alignment at H-paniculata_contig59870:488..790-

>mRNA_H-paniculata_contig59870.13645.1 ID=mRNA_H-paniculata_contig59870.13645.1|Name=mRNA_H-paniculata_contig59870.13645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig59870:488..790- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTTTGGCCTGATTGACAAGTATCAGAATTCATCCAAGCAGAGACGCCG
TATATTAATGCGGCAGCTTGACGGGACAACAATGAAGCAAAACCAGGACC
CCGATGTATTTTTGGCCCGTGTTTTTCAGCTCAGGGATGAGCTAGCACAC
ATGGGGGAAGAAGTATCGGAAGAACGATTGACCGATATTGTTATAGAAGG
ACTTACTGACGATTATGAGCAAGTGAAATATAATGCAGAGCGCGACCCCG
AGTTTAGCTTGAGCGAAATTGAGGTCACTCTGCGTAATATGTTTGCGCAT
CGTTGGTTTGGCCTGATTGACAAGTATCAGAATTCATCCAAGCAGAGACG
CCGTATATTAATGCGGCAGCTTGACGGGACAACAATGAAGCAAAACCAGG
ACCCCGATGTATTTTTGGCCCGTGTTTTTCAGCTCAGGGATGAGCTAGCA
CACATGGGGGAAGAAGTATCGGAAGAACGATTGACCGATATTGTTATAGA
AGGACTTACTGACGATTATGAGCAAGTGAAATATAATGCAGAGCGCGACC
CCGAGTTTAGCTTGAGCGAAATTGAGGTCACTCTGCGTAATATGTTTGCG
CATCGT
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