mRNA_H-paniculata_contig5987.13644.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5987.13644.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 2.120e-12 Identity = 71/207 (34.30%), Postives = 100/207 (48.31%), Query Frame = 2
Query: 2864 KLAHKPGNYGGTDRESRSEGGDGVARTVSVTPVHTNTPSAAALPQQDSSEDVRFILESGLFGAAPSTPKCNE--IERIHRERAEAELESFKALGSKRVFGSPPLESLLSFWAAAEGSGRFPYMARAARVLLSVPPSSKVSELSHELEGAEARMLSARGARAGNGWVREKGFAEMTLFLHLNRGGIPEDVPPLSEAAVTGEWIPLRLS 3478
KLA G Y G E GD + S P + + +SE + +L+SG+FG + S+ ++ E +E + E + F A + P+E LL FW A EG +P MARAARVLLSVP SS V E G R+++ +R +V EM LFL+ N+ IP +VP LS++ E +P RLS
Sbjct: 614 KLAEGAGAYPGKATE-----GDTSGASASAPPPFKRSRGPLTV---GTSERTKRLLKSGVFGGSKSSTSRDDGPSELTMKEVCQQEFDRFMARFADTTISDYPIEVLLEFW-AGEGQALYPNMARAARVLLSVPASSAVLERDFSTAG---RLITGARSRLSAAYV------EMVLFLNGNQEYIPMEVPKLSKSQGQ-EAVPRRLS 801 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5987.13644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5987.13644.1 >prot_H-paniculata_contig5987.13644.1 ID=prot_H-paniculata_contig5987.13644.1|Name=mRNA_H-paniculata_contig5987.13644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=943bp MSVNDMDVGAATSNNASSIREEQQQQEGSGSERVQGTSAVAFSQQQQQEQback to top mRNA from alignment at H-paniculata_contig5987:1344..12576- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5987.13644.1 ID=mRNA_H-paniculata_contig5987.13644.1|Name=mRNA_H-paniculata_contig5987.13644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11233bp|location=Sequence derived from alignment at H-paniculata_contig5987:1344..12576- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5987:1344..12576- >mRNA_H-paniculata_contig5987.13644.1 ID=mRNA_H-paniculata_contig5987.13644.1|Name=mRNA_H-paniculata_contig5987.13644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5658bp|location=Sequence derived from alignment at H-paniculata_contig5987:1344..12576- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |