mRNA_H-paniculata_contig59868.13643.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59868.13643.1
Unique NamemRNA_H-paniculata_contig59868.13643.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-9
Identity = 38/115 (33.04%), Postives = 62/115 (53.91%), Query Frame = 3
Query:  231 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNWSDLLCRKIGKHDFL 572
            W+ DSGATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +   D   I    +  V H+PGLD  L S+  +  +G++V  ++    I   + +    +K+GK   L
Sbjct:  263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVIWYKSTAIASAKKVGKAYML 374          
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.500e-8
Identity = 39/115 (33.91%), Postives = 60/115 (52.17%), Query Frame = 3
Query:  231 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNWSDLLCRKIGKHDFL 572
            W+ DSGATAHMTP  E +FDY+   +++ VT+A+G+ + + G G + +   D   I       V H+PGLD  L S+  +  +GL V  +     I     +    +K+GK   L
Sbjct:  160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNVEFERTSCIIWNKKQATASGKKVGKAYIL 271          
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.260e-8
Identity = 36/111 (32.43%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  231 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNWSDLLCRKIGK 560
            W+ DSGATAHMTP  + +F+Y   S +++VT+A+G+ + + G G + +   D   I    +  V ++PGLD  L S+  +  +G++V  +     I   + +    +KIGK
Sbjct:  245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVIWDKSKAVASGKKIGK 352          
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: F2UPM9_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UPM9_SALR5)

HSP 1 Score: 62.4 bits (150), Expect = 5.920e-8
Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 3
Query:  201 PVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK-MLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVN--QGLTVCLKEEGAAIALPNWS-DLLCRKIGKHDFLVAT 581
            PVP     + W+ADSGATAH+T    L+ +Y   +   VTVAN +T+ + G G  +L  T   G     +L  V HVP +  NL +L +V    +G +V +  + + I    WS  LL  K   H FL A+
Sbjct:  406 PVPP----QLWLADSGATAHITSDASLLTNYVAVTQ-HVTVANSQTVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNLLALNLVTRARRGASVVIAADDSRIQFATWSVPLLPSKDTGHLFLYAS 531          
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.770e-8
Identity = 37/115 (32.17%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  231 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNWSDLLCRKIGKHDFL 572
            W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S++ +  +G++V  +++   I   + +    +K+GK   L
Sbjct:  266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVRRLAERGMSVEFQKKSCTIWNKSKAIASGKKVGKVGVL 377          
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-7
Identity = 37/111 (33.33%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  231 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNWSDLLCRKIGK 560
            W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S+  +  +G++V  +++   I   + +    +KIGK
Sbjct:  242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLAERGMSVEFQKKSCTIWNKSKAIASGKKIGK 349          
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: F2UPN0_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UPN0_SALR5)

HSP 1 Score: 60.1 bits (144), Expect = 1.660e-7
Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = 3
Query:  201 PVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK-MLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVN--QGLTVCLKEEGAAIALPNWS-DLLCRKIGKHDFLVAT 581
            PVP     + W+ADSGATAH+T    L+ +Y   +   VTVAN + + + G G  +L  T   G     +L  V HVP +  NL +L +V    +G +V +  + + I    WS  LL  K   H FL A+
Sbjct:   88 PVPP----QLWLADSGATAHITSDASLLTNYIAVTQ-HVTVANNQAVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNLLALNLVTRARRGASVVIAADDSRIQFATWSVPLLPSKDTGHLFLYAS 213          
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: F2UNK2_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UNK2_SALR5)

HSP 1 Score: 60.8 bits (146), Expect = 1.820e-7
Identity = 46/131 (35.11%), Postives = 67/131 (51.15%), Query Frame = 3
Query:  201 PVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK-MLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVN--QGLTVCLKEEGAAIALPNWS-DLLCRKIGKHDFLVAT 581
            PVP     + W+ADSGATAH+T    L+ +Y   +   VTVAN +T+ + G G  +L  T   G     +L  V HVP +  N+ +L +V    +G +V +  + + I    WS  LL  K   H FL A+
Sbjct:   77 PVPP----QLWLADSGATAHITSDASLLTNYIAVTQ-HVTVANNQTVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNILALNLVTRARRGASVVIAVDDSRIQFATWSVPLLPSKDTGHLFLYAS 202          
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.970e-7
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  231 WVADSGATAHMTPSNELMFDYE-TCSNLFVTVANGETLPIEGYGKMLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLT 485
            W+ DSGAT+HMTP  E +FD E T S++ VT+A+G+ L + G G + + + +   I    +  V ++PGLD  L S+  +  +GLT
Sbjct:  155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237          
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.990e-7
Identity = 50/177 (28.25%), Postives = 76/177 (42.94%), Query Frame = 3
Query:    3 PGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTARVAG--QGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK-MLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALP 524
            PGHL+ NC +++    K   +  SS        SD  +    H  T  +A    GE A                    W+ DSGA+AHMT        +E     ++T+A+G+   I G G  +L   +   E+ +  +S V +VPGL TNL S++ +  + L V    +G  I  P
Sbjct:  218 PGHLQRNC-RKLLEAKKEENNTSSSGTKPK--KSDSVKAKAVHSDTRGIAFVVNGENA------------------RSWIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDP 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A329SN38_9STRA1.750e-933.04Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3M6VPY8_9STRA1.500e-833.91CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A225UGS0_9STRA4.260e-832.43Integrase, catalytic core protein (Fragment) n=1 T... [more]
F2UPM9_SALR55.920e-835.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3X5U6_9STRA6.770e-832.17CCHC-type domain-containing protein n=5 Tax=Phytop... [more]
A0A6A4BQ03_9STRA1.060e-733.33Retrovirus-related Pol polyprotein from transposon... [more]
F2UPN0_SALR51.660e-735.11Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
F2UNK2_SALR51.820e-735.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P4XNP3_9STRA1.970e-739.53Integrase catalytic core protein n=1 Tax=Phytophth... [more]
Q967L5_AEDAE1.990e-728.25Uncharacterized protein n=1 Tax=Aedes aegypti TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59868contigH-paniculata_contig59868:284..864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue3.3e-10
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size581
Cds size564
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930661.2331362-UTR-H-paniculata_contig59868:283..3001622930661.2331362-UTR-H-paniculata_contig59868:283..300Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59868 284..300 +
1691481394.306442-UTR-H-paniculata_contig59868:283..3001691481394.306442-UTR-H-paniculata_contig59868:283..300Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59868 284..300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930661.2470832-CDS-H-paniculata_contig59868:300..8641622930661.2470832-CDS-H-paniculata_contig59868:300..864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59868 301..864 +
1691481394.3166625-CDS-H-paniculata_contig59868:300..8641691481394.3166625-CDS-H-paniculata_contig59868:300..864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59868 301..864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59868.13643.1prot_H-paniculata_contig59868.13643.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59868 301..864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59868.13643.1

>prot_H-paniculata_contig59868.13643.1 ID=prot_H-paniculata_contig59868.13643.1|Name=mRNA_H-paniculata_contig59868.13643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTARVAGQGEF
ASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFV
TVANGETLPIEGYGKMLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIV
VNQGLTVCLKEEGAAIALPNWSDLLCRKIGKHDFLVAT
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mRNA from alignment at H-paniculata_contig59868:284..864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59868.13643.1 ID=mRNA_H-paniculata_contig59868.13643.1|Name=mRNA_H-paniculata_contig59868.13643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=581bp|location=Sequence derived from alignment at H-paniculata_contig59868:284..864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCAGGTCATCTGAAGATGAATTGTCCTCAGCGCATATGTCCGATCTGC AAAGGGATCGGTCATGGCGAGAGCAGTCACAGGTTGTCAGCAATGTTCTC TTCGGACGGGTTCAGGGACATTGTTGAACACGGTTTCACGGCCAGAGTGG CAGGGCAGGGCGAGTTTGCTTCGGTAATTGAGCTTATTGAAGAGGACAAG CCAGTACCAGTAGATGGTTGTGAGGAGTTTTGGGTGGCCGACAGTGGGGC TACGGCCCACATGACTCCATCTAACGAATTAATGTTTGATTACGAAACCT GCAGTAATTTGTTTGTGACGGTGGCTAACGGCGAAACACTTCCGATTGAG GGATATGGTAAGATGTTGGTATGGACGGAAGATCGGGGCGAGATACACAA ATTCAGCTTGAGTCGTGTAGCGCATGTTCCGGGCCTGGACACAAATTTGT TTTCCCTACAGATTGTAGTGAACCAGGGACTTACTGTCTGTTTGAAGGAG GAGGGTGCAGCAATTGCACTACCTAATTGGAGCGATCTTTTGTGCAGAAA AATCGGTAAACATGACTTTTTGGTAGCGACT
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Coding sequence (CDS) from alignment at H-paniculata_contig59868:284..864+

>mRNA_H-paniculata_contig59868.13643.1 ID=mRNA_H-paniculata_contig59868.13643.1|Name=mRNA_H-paniculata_contig59868.13643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig59868:284..864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATTGTCCTCAGCGCATATGTCCGATCTGCAAAGGGATCGGTCATGG
CGAGAGCAGTCACAGGTTGTCAGCAATGTTCTCTTCGGACGGGTTCAGGG
ACATTGTTGAACACGGTTTCACGGCCAGAGTGGCAGGGCAGGGCGAGTTT
GCTTCGGTAATTGAGCTTATTGAAGAGGACAAGCCAGTACCAGTAGATGG
TTGTGAGGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTC
CATCTAACGAATTAATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTG
ACGGTGGCTAACGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTT
GGTATGGACGGAAGATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTG
TAGCGCATGTTCCGGGCCTGGACACAAATTTGTTTTCCCTACAGATTGTA
GTGAACCAGGGACTTACTGTCTGTTTGAAGGAGGAGGGTGCAGCAATTGC
ACTACCTAATTGGAGCGATCTTTTGTGCAGAAAAATCGGTAAACATGACT
TTTTGGTAGCGACTATGAATTGTCCTCAGCGCATATGTCCGATCTGCAAA
GGGATCGGTCATGGCGAGAGCAGTCACAGGTTGTCAGCAATGTTCTCTTC
GGACGGGTTCAGGGACATTGTTGAACACGGTTTCACGGCCAGAGTGGCAG
GGCAGGGCGAGTTTGCTTCGGTAATTGAGCTTATTGAAGAGGACAAGCCA
GTACCAGTAGATGGTTGTGAGGAGTTTTGGGTGGCCGACAGTGGGGCTAC
GGCCCACATGACTCCATCTAACGAATTAATGTTTGATTACGAAACCTGCA
GTAATTTGTTTGTGACGGTGGCTAACGGCGAAACACTTCCGATTGAGGGA
TATGGTAAGATGTTGGTATGGACGGAAGATCGGGGCGAGATACACAAATT
CAGCTTGAGTCGTGTAGCGCATGTTCCGGGCCTGGACACAAATTTGTTTT
CCCTACAGATTGTAGTGAACCAGGGACTTACTGTCTGTTTGAAGGAGGAG
GGTGCAGCAATTGCACTACCTAATTGGAGCGATCTTTTGTGCAGAAAAAT
CGGTAAACATGACTTTTTGGTAGCGACT
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