mRNA_H-paniculata_contig5985.13641.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5985.13641.1
Unique NamemRNA_H-paniculata_contig5985.13641.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5985.13641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5985contigH-paniculata_contig5985:3577..7333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1380
Cds size1158
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5985.13641.1prot_H-paniculata_contig5985.13641.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5985 3799..7333 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930660.953768-UTR-H-paniculata_contig5985:3576..37981622930660.953768-UTR-H-paniculata_contig5985:3576..3798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5985 3577..3798 +
1691481394.1835244-UTR-H-paniculata_contig5985:3576..37981691481394.1835244-UTR-H-paniculata_contig5985:3576..3798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5985 3577..3798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930660.9675527-CDS-H-paniculata_contig5985:3798..41351622930660.9675527-CDS-H-paniculata_contig5985:3798..4135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5985 3799..4135 +
1691481394.1930828-CDS-H-paniculata_contig5985:3798..41351691481394.1930828-CDS-H-paniculata_contig5985:3798..4135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5985 3799..4135 +
1622930660.9823365-CDS-H-paniculata_contig5985:6512..73331622930660.9823365-CDS-H-paniculata_contig5985:6512..7333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5985 6513..7333 +
1691481394.2051346-CDS-H-paniculata_contig5985:6512..73331691481394.2051346-CDS-H-paniculata_contig5985:6512..7333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5985 6513..7333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5985.13641.1

>prot_H-paniculata_contig5985.13641.1 ID=prot_H-paniculata_contig5985.13641.1|Name=mRNA_H-paniculata_contig5985.13641.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=386bp
MMIGTARNEPDGASAAAMPTASPPPRPSLPKQSAEALGSSLSMASPQLTS
STTSCEYRLDGMEAADAKLEILNTPAAAALNYPTNGTGEGADSNHSPTKT
YSGAMGVQGEDGGFITTSAIGESGNVAQQHQAERPKAINHSTLTTPVRSH
TLETCITDNTQWAPAAEPDKPRDTTRTEAAAVAGAVPPLRTTIIACTSPV
GLLVEGAIARTKVTFDPHPPILALPSSLSDFLSSPANTTTTTTPLASTIA
LPLCQPMPLPATEVVGHHPSPVAAISPLSFQAEGHSLANPSLSDLSELAD
GIITELAISPSLGAMGAATDNSATYDSPAPSAPWLVREALSVQVAVEEAV
RGLTASSCESSSCCSPCDGSSGRKGVGASGGGGGGS
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mRNA from alignment at H-paniculata_contig5985:3577..7333+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5985.13641.1 ID=mRNA_H-paniculata_contig5985.13641.1|Name=mRNA_H-paniculata_contig5985.13641.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3757bp|location=Sequence derived from alignment at H-paniculata_contig5985:3577..7333+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAATAGGGAGTGCAGACAATCCAACCTCTCAAAGCTCGGAGCATTTCGA
GCGGAGGCTATCTGTATGCCAGCAGCAAGAGAATCTTGCACGGCAAGAAT
AGCAATAGTAACAGTAAAATCAGACAGAGCGCGGTCTAAGTCGTTAGTTG
TTGTGGGGAAGAGCAAACAATGAAACACAGACCATCTGAGTAATTAGCCC
TGGTGGAGTGGACCTCAACAGCATGATGATCGGTACCGCGAGAAATGAAC
CAGATGGCGCTTCAGCTGCAGCCATGCCCACTGCCTCCCCGCCGCCGCGG
CCGTCTCTTCCGAAGCAATCAGCAGAGGCTCTGGGGTCGTCGTTGTCCAT
GGCGTCTCCTCAGTTGACCTCCTCTACAACAAGTTGCGAATATAGGCTGG
ATGGGATGGAGGCGGCTGATGCAAAGCTGGAAATACTAAACACACCAGCA
GCAGCAGCACTCAATTATCCCACGAACGGTACCGGTGAGGGTGCTGACAG
TAACCACTCCCCGACAAAAACCTATTCGGGAGCAATGGGAGTACAGGGTG
AAGATGGAGGTGAGGGACGTGATCTCTTACCTGTGAGTGCATGATTATAG
TCGAAGGACGGGTCGGCAACGAGCTTCGAACGGCTGTAGCATTTTTGGAG
CCTATGACCTCGTACTATTGCCCGCGCTCACCATTCTGGGCGCTTGAAAA
AAGAACAAGATCGGGATTCTTTTCTACAAGTTCAAAAACGTGTCCAGCTT
GTCTGCTGATTTGTTCCGATACATTTGTAGAGCTCTACACAAGTAGGCAT
ACATACACGCAGTCACATTCATATTTATTGAAGACAAATAGTTTGCAGAC
AAGCTTAAGAAATAGGTCAAGCTTGTCTGCCGTTCAACGTCCGTTCATAT
TCACATTCGACAGGCTTGGGAAGCTTCAAAACATGTGTCAACCCCCATCT
CCCAACTGCGTTTCCATTCATATGTTGCGATTCACGTTGCACTTGAACTA
GTTATTATGTTGCAGTATACGGTGGTATTGGTATTCCGCCTACTGGTCAG
CAAATTCATGTACTGCATATATTAATAGTACAACAGGCAGTATAGGCTAG
GCGATCTGTAGAACGGAGTGCCCGCGTCATTGATAGCGGTGTCTACGTGC
AGAATAATCACCCATTGGCCATTAAGAATCAGTTATACAGAATCACTCTG
ACAGTGCGCCATTTTTTCCTTCACTGTTTTCTCATGGATCGATGGAACAT
GGTCGCGCTCGCACATGTGGCCGTGTACACGACTTTTTGCGGTACCTCAT
AATGATGCATCATATTGGCTTTCCTTGGGTACATTGATCAATAAACTTAC
GTCCTGTCAGTGGGAGGAACACCATTGCTTCGGCTTGTGCCAGGCGTCGT
CAGCCGCCAGTGATTTACATATAGATTGTGTGACCGTCAATTCGGTGGTG
GTGTTGACGTTGACTCACCTGTCGCTTACGGACTCGTGCTGCTGGAAGAC
ATTTTCTGCTGTCGCCGGTGGCTTAGTTGATTTACGGTTTCACAGGCGTC
AAGAGGGGACGGGCAAGTCATGCTTTCAATATTTACATGTGCCTGATGTA
CACTCAGTTTGGTCAAATCCTGCCTTTCTGTGTGGAGCCTGGGTGCGTGT
CAAGTAAGCAGCAACTCAGATAAAATACAAAAACAACTTGACACCACCGA
AGAAGCTCAAGACAGCCCAGTGTACCAAGGTATTTCTAGATCCCGGACCA
CAACACGAAGCAGGTTGAACTCTACACTGGACATGGCTATGGGCAGATTG
GGATTTCGATGGCGGTTGCGGTACCGTTAGGGCTATAGGGGCATGGGCGG
GTAGTGTAAAGGCGGCGTGCGTGAATTGATCCAGTCTCACGAGTGATATC
ATATTCGAATGGACTTGGGAGAGGAAAACCTGACCACTGATGTACACTGC
TAGCCCTCAACGTAACCTCCCTTACAGTTGTCCGCATTTTCTGGCTTGAC
TCTTGGCAACACCACAACTTGAGGACTAAGGGCCGTTATAAACCGTAAGA
GGTCGTTCTTTGTCCGATTCGTCCGAATTTGCCCATTTTTCCGTTTTCTG
GAAATTGAAAATCACGACAGCGAGCTGAACAACTTGACGAGTTTGACCGA
AGTATACCAGACTTATCAGGGCAACATGCTGCGGAGTGTTTCCGCACCTT
TTCCTCAATTTTGAGCTCACTATCTCGATTTCTAATTTTTCGGAAAGGGA
AAAATCGGACAAATGCAGCTCCGTGTAAAATGGCCATAACGAGTAGATGC
TGTTCGTTTAGCCATTTCTAACTAATATAGTATCCAAACCGAAATAGAAT
AGCCATAGTTATGTACATTAAGTACCCAGCCTTGTATTATTTGCCCCCTT
CGTCCGACAAGAATCAAAGCCACACGGCGCCATAGTGCTCGGCCGAGGGC
CACAAAAAAAAGGCACAACATTACGGAACATACACCGCCACCAGTAATAT
CTCACTCGCTGCCATATGTGAGCGAGCTATCTCACAAGAGCTACGGATTA
CGCCCGGATGAAGGAAACGATACAAATGGCAGAGCGACAATGTCTCATAC
TGTCGCAGACGAGACCACCGATTGCATGTACCACAACAGGACTACATCGA
TTGCGTTCACCACAACGGGAACAGTTGCAGTAATGATCAGACTACGCACA
TGTCCCTCCCTCTATGAACCACCAGTTCGGGGTTTCGAACATGAAAAAAA
ACATACAGTTTGCCTCGTGACAGAACACACGGGTACCCCAATACAAAACA
TAACCGAAAAGTAGAGATGTCTCAGGGCTCCTATCGAGTGTTGTAAGGCC
AACCGTACTTGATCATACGTGCCTTGCCCCCCCCCTTTCCCCCCCCCGGG
TACGCCGCCCCGCGCGATCTGATAATTCACACGCAGGCTTTATCACTACC
TCCGCCATCGGCGAGAGTGGGAATGTCGCCCAACAGCACCAGGCCGAACG
CCCAAAAGCGATAAATCACTCGACGCTAACAACACCAGTAAGGTCACACA
CACTCGAGACCTGCATCACTGACAACACCCAATGGGCGCCTGCAGCAGAG
CCCGACAAACCCCGAGACACCACCCGGACGGAGGCGGCGGCGGTGGCGGG
AGCTGTTCCACCCCTGAGGACTACCATCATAGCATGCACCAGTCCTGTGG
GGTTGCTAGTTGAAGGAGCCATAGCGCGAACCAAAGTCACATTTGACCCC
CATCCCCCCATCCTTGCCCTACCATCATCCCTATCCGATTTTCTCTCCTC
ACCCGCTAACACCACCACCACCACTACACCACTCGCGTCAACCATCGCAT
TACCTCTGTGCCAACCGATGCCACTACCGGCGACGGAGGTAGTAGGTCAT
CACCCATCGCCGGTGGCGGCGATATCGCCGCTCAGCTTCCAGGCGGAAGG
GCACAGCTTGGCGAACCCGTCATTATCCGACCTGAGCGAGTTGGCAGACG
GCATCATTACCGAGCTTGCGATCTCCCCGTCGTTAGGGGCGATGGGCGCT
GCCACTGATAATAGCGCGACATATGATTCGCCGGCACCGAGCGCGCCTTG
GCTAGTTCGCGAGGCTTTATCGGTTCAAGTTGCGGTGGAGGAGGCCGTAC
GGGGTCTTACTGCCAGTTCTTGTGAATCCTCGTCATGTTGTTCCCCTTGT
GACGGGAGCAGTGGTAGGAAAGGGGTAGGGGCGAGCGGCGGTGGCGGCGG
AGGGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5985:3577..7333+

>mRNA_H-paniculata_contig5985.13641.1 ID=mRNA_H-paniculata_contig5985.13641.1|Name=mRNA_H-paniculata_contig5985.13641.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2316bp|location=Sequence derived from alignment at H-paniculata_contig5985:3577..7333+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGATCGGTACCGCGAGAAATGAACCAGATGGCGCTTCAGCTGCAGC
CATGCCCACTGCCTCCCCGCCGCCGCGGCCGTCTCTTCCGAAGCAATCAG
CAGAGGCTCTGGGGTCGTCGTTGTCCATGGCGTCTCCTCAGTTGACCTCC
TCTACAACAAGTTGCGAATATAGGCTGGATGGGATGGAGGCGGCTGATGC
AAAGCTGGAAATACTAAACACACCAGCAGCAGCAGCACTCAATTATCCCA
CGAACGGTACCGGTGAGGGTGCTGACAGTAACCACTCCCCGACAAAAACC
TATTCGGGAGCAATGGGAGTACAGGGTGAAGATGGAGATGATGATCGGTA
CCGCGAGAAATGAACCAGATGGCGCTTCAGCTGCAGCCATGCCCACTGCC
TCCCCGCCGCCGCGGCCGTCTCTTCCGAAGCAATCAGCAGAGGCTCTGGG
GTCGTCGTTGTCCATGGCGTCTCCTCAGTTGACCTCCTCTACAACAAGTT
GCGAATATAGGCTGGATGGGATGGAGGCGGCTGATGCAAAGCTGGAAATA
CTAAACACACCAGCAGCAGCAGCACTCAATTATCCCACGAACGGTACCGG
TGAGGGTGCTGACAGTAACCACTCCCCGACAAAAACCTATTCGGGAGCAA
TGGGAGTACAGGGTGAAGATGGAGGCTTTATCACTACCTCCGCCATCGGC
GAGAGTGGGAATGTCGCCCAACAGCACCAGGCCGAACGCCCAAAAGCGAT
AAATCACTCGACGCTAACAACACCAGTAAGGTCACACACACTCGAGACCT
GCATCACTGACAACACCCAATGGGCGCCTGCAGCAGAGCCCGACAAACCC
CGAGACACCACCCGGACGGAGGCGGCGGCGGTGGCGGGAGCTGTTCCACC
CCTGAGGACTACCATCATAGCATGCACCAGTCCTGTGGGGTTGCTAGTTG
AAGGAGCCATAGCGCGAACCAAAGTCACATTTGACCCCCATCCCCCCATC
CTTGCCCTACCATCATCCCTATCCGATTTTCTCTCCTCACCCGCTAACAC
CACCACCACCACTACACCACTCGCGTCAACCATCGCATTACCTCTGTGCC
AACCGATGCCACTACCGGCGACGGAGGTAGTAGGTCATCACCCATCGCCG
GTGGCGGCGATATCGCCGCTCAGCTTCCAGGCGGAAGGGCACAGCTTGGC
GAACCCGTCATTATCCGACCTGAGCGAGTTGGCAGACGGCATCATTACCG
AGCTTGCGATCTCCCCGTCGTTAGGGGCGATGGGCGCTGCCACTGATAAT
AGCGCGACATATGATTCGCCGGCACCGAGCGCGCCTTGGCTAGTTCGCGA
GGCTTTATCGGTTCAAGTTGCGGTGGAGGAGGCCGTACGGGGTCTTACTG
CCAGTTCTTGTGAATCCTCGTCATGTTGTTCCCCTTGTGACGGGAGCAGT
GGTAGGAAAGGGGTAGGGGCGAGCGGCGGTGGCGGCGGAGGGAGCGCTTT
ATCACTACCTCCGCCATCGGCGAGAGTGGGAATGTCGCCCAACAGCACCA
GGCCGAACGCCCAAAAGCGATAAATCACTCGACGCTAACAACACCAGTAA
GGTCACACACACTCGAGACCTGCATCACTGACAACACCCAATGGGCGCCT
GCAGCAGAGCCCGACAAACCCCGAGACACCACCCGGACGGAGGCGGCGGC
GGTGGCGGGAGCTGTTCCACCCCTGAGGACTACCATCATAGCATGCACCA
GTCCTGTGGGGTTGCTAGTTGAAGGAGCCATAGCGCGAACCAAAGTCACA
TTTGACCCCCATCCCCCCATCCTTGCCCTACCATCATCCCTATCCGATTT
TCTCTCCTCACCCGCTAACACCACCACCACCACTACACCACTCGCGTCAA
CCATCGCATTACCTCTGTGCCAACCGATGCCACTACCGGCGACGGAGGTA
GTAGGTCATCACCCATCGCCGGTGGCGGCGATATCGCCGCTCAGCTTCCA
GGCGGAAGGGCACAGCTTGGCGAACCCGTCATTATCCGACCTGAGCGAGT
TGGCAGACGGCATCATTACCGAGCTTGCGATCTCCCCGTCGTTAGGGGCG
ATGGGCGCTGCCACTGATAATAGCGCGACATATGATTCGCCGGCACCGAG
CGCGCCTTGGCTAGTTCGCGAGGCTTTATCGGTTCAAGTTGCGGTGGAGG
AGGCCGTACGGGGTCTTACTGCCAGTTCTTGTGAATCCTCGTCATGTTGT
TCCCCTTGTGACGGGAGCAGTGGTAGGAAAGGGGTAGGGGCGAGCGGCGG
TGGCGGCGGAGGGAGC
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