mRNA_H-paniculata_contig598.13631.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig598.13631.1 vs. uniprot
Match: A0A6H5KXY0_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXY0_9PHAE) HSP 1 Score: 168 bits (425), Expect = 3.420e-39 Identity = 243/735 (33.06%), Postives = 298/735 (40.54%), Query Frame = 2
Query: 413 PPLPRGWGELRTGDGRSYYVYYPTGAVQWQRPAPEPKTVTDDVD--GSQPEQQSRSDNDTQEL--------------------GGDGSGGGEGGEEGPLGGESEMSDAELNIDATGHGGTQRSMTGSGGVANAGVTRSGIEDDGQTAQPQTNRITGAPYPSAPWGQRSSL-AADTSDLSSSQRSLPQPPTEADPKWPTPPSSPPFQAVSQQQQQQRLPDRSSEF---QPWGGGDSTFASTFPPHAPEQSQGLQEGSFDASGSRPPIWGIDSGRQSIEQLPEQFPTDKDAPWGIKAGQQQQFPAANDVASSAATTQTWEQGQPAEGNDSLGAEGLGAPAGTSTMPTDSSGSDCGSWGAAEGLAAEQGQEKGSGSGASKFIADPWLGGGREQTQTQDRAGQEQGVPRAEVGAGTNGGLAPSGEGASSHWSEQERPIPYPASYVQQQPQVRESPQGSFNGASPSQQRQQQMEPMYQRSNKPESWGTDAEPRGPGRTSHGEQGQHPRLSR---GPQNGPPQDWERASSPPSMDHGQDSDWRASASQ-GPGAKEYEPPPGWVEARYAGQGQPRMGEQGQQHEGYYEQDGGYYQGPQGRDQWDSRENAMDEYASFPVGSRALVRHSSSAPGSITEIREQQGLHLVKGAWARILVGTGKTRAVLHSAKERATGAASTASYKIKNTMGTMTSRVADALEDDPNGMIGPYGQPPQNYYSGS-VGPGDDRRPNPRPYRENGLAGY 2524
PPLP GWGELRTGDGR YYVYYPTGAVQW+RP P P +D D G Q E+ S + GG +G GE E P GESEMSDAE ID T G + S+TG AG G A P T G P +P R L A ++++S P+ A P+ + RLP F Q G G T + P+ G G++ E P D PWG+ G QQ P+ S G P N + A+ PA WG G A+ G GS + + DP G R+Q GG G S WS AS QQQ G+ GA P +R + P Q HP ++ G + Q W Q + A AS G G PP Q QP G+ G GYY ++ GYYQGP G + SR+ EY FP GSRALV ++ AP E++EQ GL LVKGAWARILVG KTRA LH AKE+A AASTA+YKIKNTMG++TSRVAD LE DP G+ GPYGQPPQ+YY +G G ++ +PR ++ GY
Sbjct: 24 PPLPAGWGELRTGDGRPYYVYYPTGAVQWERPKP-PSADSDGRDEAGQQREEGSSAARXXXXXXXXXXXXXXXXXXXXXXXXXGGAVAGYGE---EDPYRGESEMSDAEREID-TATSGARSSVTGDADSPAAG--------GGAQAPPST--YPGQP---SPMDSRHVLQGAAGKEVTASAY-----PSSARPEG----------------NEGRLPSPDDPFRQQQGSGPGGVTGXXXXXXXXXXXXXXXXXXXXXXKAAASPLSGERIGQEGSGVGGE--PPD---PWGM--GGDQQAPSQPQQPS----------GTPP--NPFIQADQNPPPA----------------WGEDRGEASAGG---GSLTAPAASSVDPMRGSTRDQP----------------------GGRNEHGSPLSDAWS---------ASRQQQQ--------GAPPGAEPYDRRPAGVSPAQQ---------------------------HPGYNQQQPGDEAAEGQSWGGGXXXXXXXXXQPATASACASXXGLGQXXXXPP--------FQQQQPGRGDYG----GYYGRNDGYYQGPPGGN-GGSRQQGNAEYGGFPAGSRALVPNNGGAPRGGLEVKEQ-GLQLVKGAWARILVGKDKTRAALHDAKEKAGVAASTATYKIKNTMGSVTSRVADVLEGDPQGLAGPYGQPPQDYYGEPRMGAGGGQQQHPRSWQGAPQNGY 601
BLAST of mRNA_H-paniculata_contig598.13631.1 vs. uniprot
Match: D8LJY1_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY1_ECTSI) HSP 1 Score: 148 bits (374), Expect = 5.560e-33 Identity = 88/159 (55.35%), Postives = 108/159 (67.92%), Query Frame = 2
Query: 2054 GYYEQDGGYYQGPQGRDQWDSRENAMDEYASFPVGSRALVRHSSSAPGSITEIREQQGLHLVKGAWARILVGTGKTRAVLHSAKERATGAASTASYKIKNTMGTMTSRVADALEDDPNGMIGPYGQPPQNYYSGS--VGPGDDRRPNPRPYRENGLAGY 2524
GYY ++ GYYQGP G + +++ EY FP GSRALV + AP E++EQ GL LVKGAWARILVG KT A L+ AKE+A AASTASYKIKNTMG++TSRVAD LE DP G+ GPYGQPPQ Y G +G G ++ +PR ++ GY
Sbjct: 500 GYYGRNDGYYQGPPGGNGAPTQQGNA-EYGGFPAGSRALVPSNGGAPRGGLEVKEQ-GLQLVKGAWARILVGKDKTTAALYEAKEKAGIAASTASYKIKNTMGSVTSRVADVLEGDPQGLAGPYGQPPQEDYYGEPGMGAGGQQQQDPRSWQGAPQNGY 656 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig598.13631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig598.13631.1 >prot_H-paniculata_contig598.13631.1 ID=prot_H-paniculata_contig598.13631.1|Name=mRNA_H-paniculata_contig598.13631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=978bp MAGTVCVRAFYLLAFALFEAVRALQSDAGGTYAGSSYSNGTPSYTAQHSTback to top mRNA from alignment at H-paniculata_contig598:14677..20952+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig598.13631.1 ID=mRNA_H-paniculata_contig598.13631.1|Name=mRNA_H-paniculata_contig598.13631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6276bp|location=Sequence derived from alignment at H-paniculata_contig598:14677..20952+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig598:14677..20952+ >mRNA_H-paniculata_contig598.13631.1 ID=mRNA_H-paniculata_contig598.13631.1|Name=mRNA_H-paniculata_contig598.13631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5868bp|location=Sequence derived from alignment at H-paniculata_contig598:14677..20952+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |