mRNA_H-paniculata_contig1215.1367.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1215.1367.1
Unique NamemRNA_H-paniculata_contig1215.1367.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1215.1367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1215contigH-paniculata_contig1215:26578..26940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size177
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.4312-CDS-H-paniculata_contig1215:26577..266701622928935.4312-CDS-H-paniculata_contig1215:26577..26670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1215 26578..26670 +
1691480673.1049283-CDS-H-paniculata_contig1215:26577..266701691480673.1049283-CDS-H-paniculata_contig1215:26577..26670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1215 26578..26670 +
1622928935.4500697-CDS-H-paniculata_contig1215:26858..269391622928935.4500697-CDS-H-paniculata_contig1215:26858..26939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1215 26859..26939 +
1691480673.1178694-CDS-H-paniculata_contig1215:26858..269391691480673.1178694-CDS-H-paniculata_contig1215:26858..26939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1215 26859..26939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1215.1367.1prot_H-paniculata_contig1215.1367.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1215 26578..26939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1215.1367.1

>prot_H-paniculata_contig1215.1367.1 ID=prot_H-paniculata_contig1215.1367.1|Name=mRNA_H-paniculata_contig1215.1367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
SVEAPSVDVDVKKPKKGLFGGMFKKPSMSGKVTSGDVSLPSASGDVSLPS
GDISLPEV
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mRNA from alignment at H-paniculata_contig1215:26578..26940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1215.1367.1 ID=mRNA_H-paniculata_contig1215.1367.1|Name=mRNA_H-paniculata_contig1215.1367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at H-paniculata_contig1215:26578..26940+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGTGGAGGCTCCTTCGGTAGACGTGGACGTGAAGAAGCCGAAGAAGGG
CCTATTCGGCGGGATGTTCAAGAAGCCGTCCATGTCCGGAAAGGTGAGTG
TATCTGTGCTCGTCCGTGTTCGATGCATGCAGGGGTCTTTTTCCTGGATG
TGTTGGCGTGTCGTCGATCATTCATGCATGGTGCAGCACCCCGCTAGCGC
TCTCCGCTTCTTCGTTGCTACAGTCCAGTAGATGGTTACGGCGTTTAACC
ACTAGGTCGCACTTCGTTCTTGCTGTCGCAGGTTACTAGCGGCGACGTGT
CCTTACCGTCGGCGTCCGGCGACGTGTCCTTACCTTCGGGAGATATTTCG
CTTCCGGAGGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig1215:26578..26940+

>mRNA_H-paniculata_contig1215.1367.1 ID=mRNA_H-paniculata_contig1215.1367.1|Name=mRNA_H-paniculata_contig1215.1367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig1215:26578..26940+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGTGGAGGCTCCTTCGGTAGACGTGGACGTGAAGAAGCCGAAGAAGGG
CCTATTCGGCGGGATGTTCAAGAAGCCGTCCATGTCCGGAAAGTCGGTGG
AGGCTCCTTCGGTAGACGTGGACGTGAAGAAGCCGAAGAAGGGCCTATTC
GGCGGGATGTTCAAGAAGCCGTCCATGTCCGGAAAGGTTACTAGCGGCGA
CGTGTCCTTACCGTCGGCGTCCGGCGACGTGTCCTTACCTTCGGGAGATA
TTTCGCTTCCGGAGGTGGTTACTAGCGGCGACGTGTCCTTACCGTCGGCG
TCCGGCGACGTGTCCTTACCTTCGGGAGATATTTCGCTTCCGGAGGTG
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