prot_H-paniculata_contig59782.13627.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig59782.13627.1
Unique Nameprot_H-paniculata_contig59782.13627.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length231
Homology
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BLAST of mRNA_H-paniculata_contig59782.13627.1 vs. uniprot
Match: D8LGM1_ECTSI (F-box domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM1_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 3.910e-22
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0 
Query:    7 KNFGVSEDITVAILGNLDARDLARATATSRGWRRCTSSRILWAAVYARDFLGHVP 61
            K F VSED+T AILG+LDARDLARA ATSRGWRRCTSSR+LWAAVYARDFLGHVP
Sbjct:   87 KAFNVSEDVTAAILGDLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 141
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BLAST of mRNA_H-paniculata_contig59782.13627.1 vs. uniprot
Match: A0A6H5L5A3_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 6.860e-21
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0 
Query:    9 FGVSEDITVAILGNLDARDLARATATSRGWRRCTSSRILWAAVYARDFLGHVP 61
            F VSED+T AILG+LDA DLARA ATSRGWRRCTSSR+LWAAVYARDFLGHVP
Sbjct:  679 FNVSEDVTAAILGDLDAHDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 731
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59782.13627.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM1_ECTSI3.910e-2287.27F-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L5A3_9PHAE6.860e-2186.79F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 216..231
NoneNo IPR availableGENE3D1.20.1280.50coord: 10..113
e-value: 7.0E-8
score: 34.3
IPR001810F-box domainPFAMPF12937F-box-likecoord: 14..52
e-value: 2.6E-7
score: 30.4
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 12..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59782contigH-paniculata_contig59782:110..802 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59782.13627.1mRNA_H-paniculata_contig59782.13627.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig59782 110..802 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig59782.13627.1 ID=prot_H-paniculata_contig59782.13627.1|Name=mRNA_H-paniculata_contig59782.13627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
MFVFFCKNFGVSEDITVAILGNLDARDLARATATSRGWRRCTSSRILWAA
VYARDFLGHVPPPPSPPSHGSPGEMATASARGVGGGGGSDRRRLNNNNGN
SRSDRSRRGFVANGNNNNNQNSNYRSPCPFGRVSSAPAGAGSGRWVLPGR
RYSNGGGGGGGGMGSEAWRGALGGEFGAGEEGRRGAGAGGGGMGVSVDAA
GALGEFFMDNPKERYAKQLTERKARLENRQK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf