mRNA_H-paniculata_contig59782.13627.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59782.13627.1
Unique NamemRNA_H-paniculata_contig59782.13627.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59782.13627.1 vs. uniprot
Match: D8LGM1_ECTSI (F-box domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM1_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 3.910e-22
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:   19 KNFGVSEDITVAILGNLDARDLARATATSRGWRRCTSSRILWAAVYARDFLGHVP 183
            K F VSED+T AILG+LDARDLARA ATSRGWRRCTSSR+LWAAVYARDFLGHVP
Sbjct:   87 KAFNVSEDVTAAILGDLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 141
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BLAST of mRNA_H-paniculata_contig59782.13627.1 vs. uniprot
Match: A0A6H5L5A3_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 6.860e-21
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:   25 FGVSEDITVAILGNLDARDLARATATSRGWRRCTSSRILWAAVYARDFLGHVP 183
            F VSED+T AILG+LDA DLARA ATSRGWRRCTSSR+LWAAVYARDFLGHVP
Sbjct:  679 FNVSEDVTAAILGDLDAHDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 731
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59782.13627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM1_ECTSI3.910e-2287.27F-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L5A3_9PHAE6.860e-2186.79F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59782contigH-paniculata_contig59782:110..802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size693
Cds size693
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930659.355995-CDS-H-paniculata_contig59782:109..8021622930659.355995-CDS-H-paniculata_contig59782:109..802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59782 110..802 +
1691481393.4667752-CDS-H-paniculata_contig59782:109..8021691481393.4667752-CDS-H-paniculata_contig59782:109..802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59782 110..802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59782.13627.1prot_H-paniculata_contig59782.13627.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59782 110..802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59782.13627.1

>prot_H-paniculata_contig59782.13627.1 ID=prot_H-paniculata_contig59782.13627.1|Name=mRNA_H-paniculata_contig59782.13627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
MFVFFCKNFGVSEDITVAILGNLDARDLARATATSRGWRRCTSSRILWAA
VYARDFLGHVPPPPSPPSHGSPGEMATASARGVGGGGGSDRRRLNNNNGN
SRSDRSRRGFVANGNNNNNQNSNYRSPCPFGRVSSAPAGAGSGRWVLPGR
RYSNGGGGGGGGMGSEAWRGALGGEFGAGEEGRRGAGAGGGGMGVSVDAA
GALGEFFMDNPKERYAKQLTERKARLENRQK
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mRNA from alignment at H-paniculata_contig59782:110..802+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59782.13627.1 ID=mRNA_H-paniculata_contig59782.13627.1|Name=mRNA_H-paniculata_contig59782.13627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=693bp|location=Sequence derived from alignment at H-paniculata_contig59782:110..802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGTTTTTTTTTGCAAGAATTTCGGCGTAAGCGAGGACATCACTGT
AGCAATCCTGGGCAACCTGGATGCCCGAGATCTCGCCCGAGCCACCGCTA
CCAGCCGCGGCTGGCGCCGCTGCACCTCCTCCCGCATCCTCTGGGCCGCC
GTTTACGCCCGCGACTTTCTGGGCCACGTCCCGCCCCCGCCGAGCCCTCC
CTCCCACGGCTCGCCTGGCGAGATGGCGACGGCGAGCGCTAGAGGCGTCG
GGGGGGGTGGGGGGAGCGACCGCCGCCGCCTTAATAATAATAACGGCAAC
AGCAGAAGCGACCGGTCGAGGCGGGGGTTTGTTGCGAACGGTAACAATAA
CAACAATCAAAATAGTAACTATCGTAGCCCCTGTCCGTTCGGACGGGTTT
CCTCGGCACCCGCTGGTGCCGGCAGCGGGCGATGGGTACTCCCCGGAAGA
CGGTATAGCAACGGTGGCGGCGGCGGCGGGGGGGGGATGGGGAGTGAAGC
GTGGCGGGGGGCGCTAGGTGGAGAGTTTGGGGCGGGGGAGGAGGGGAGGA
GGGGGGCGGGGGCGGGAGGTGGCGGGATGGGTGTAAGTGTTGACGCGGCG
GGGGCTCTCGGGGAATTTTTCATGGATAATCCGAAGGAGCGGTACGCAAA
GCAGCTGACGGAGAGAAAGGCTAGGCTGGAGAACCGACAGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig59782:110..802+

>mRNA_H-paniculata_contig59782.13627.1 ID=mRNA_H-paniculata_contig59782.13627.1|Name=mRNA_H-paniculata_contig59782.13627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig59782:110..802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGTTTTTTTTTGCAAGAATTTCGGCGTAAGCGAGGACATCACTGT
AGCAATCCTGGGCAACCTGGATGCCCGAGATCTCGCCCGAGCCACCGCTA
CCAGCCGCGGCTGGCGCCGCTGCACCTCCTCCCGCATCCTCTGGGCCGCC
GTTTACGCCCGCGACTTTCTGGGCCACGTCCCGCCCCCGCCGAGCCCTCC
CTCCCACGGCTCGCCTGGCGAGATGGCGACGGCGAGCGCTAGAGGCGTCG
GGGGGGGTGGGGGGAGCGACCGCCGCCGCCTTAATAATAATAACGGCAAC
AGCAGAAGCGACCGGTCGAGGCGGGGGTTTGTTGCGAACGGTAACAATAA
CAACAATCAAAATAGTAACTATCGTAGCCCCTGTCCGTTCGGACGGGTTT
CCTCGGCACCCGCTGGTGCCGGCAGCGGGCGATGGGTACTCCCCGGAAGA
CGGTATAGCAACGGTGGCGGCGGCGGCGGGGGGGGGATGGGGAGTGAAGC
GTGGCGGGGGGCGCTAGGTGGAGAGTTTGGGGCGGGGGAGGAGGGGAGGA
GGGGGGCGGGGGCGGGAGGTGGCGGGATGGGTGTAAGTGTTGACGCGGCG
GGGGCTCTCGGGGAATTTTTCATGGATAATCCGAAGGAGCGGTACGCAAA
GCAGCTGACGGAGAGAAAGGCTAGGCTGGAGAACCGACAGAAGATGTTTG
TTTTTTTTTGCAAGAATTTCGGCGTAAGCGAGGACATCACTGTAGCAATC
CTGGGCAACCTGGATGCCCGAGATCTCGCCCGAGCCACCGCTACCAGCCG
CGGCTGGCGCCGCTGCACCTCCTCCCGCATCCTCTGGGCCGCCGTTTACG
CCCGCGACTTTCTGGGCCACGTCCCGCCCCCGCCGAGCCCTCCCTCCCAC
GGCTCGCCTGGCGAGATGGCGACGGCGAGCGCTAGAGGCGTCGGGGGGGG
TGGGGGGAGCGACCGCCGCCGCCTTAATAATAATAACGGCAACAGCAGAA
GCGACCGGTCGAGGCGGGGGTTTGTTGCGAACGGTAACAATAACAACAAT
CAAAATAGTAACTATCGTAGCCCCTGTCCGTTCGGACGGGTTTCCTCGGC
ACCCGCTGGTGCCGGCAGCGGGCGATGGGTACTCCCCGGAAGACGGTATA
GCAACGGTGGCGGCGGCGGCGGGGGGGGGATGGGGAGTGAAGCGTGGCGG
GGGGCGCTAGGTGGAGAGTTTGGGGCGGGGGAGGAGGGGAGGAGGGGGGC
GGGGGCGGGAGGTGGCGGGATGGGTGTAAGTGTTGACGCGGCGGGGGCTC
TCGGGGAATTTTTCATGGATAATCCGAAGGAGCGGTACGCAAAGCAGCTG
ACGGAGAGAAAGGCTAGGCTGGAGAACCGACAGAAG
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