mRNA_H-paniculata_contig59729.13625.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59729.13625.1
Unique NamemRNA_H-paniculata_contig59729.13625.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig59729.13625.1 vs. uniprot
Match: D7G0J8_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J8_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 8.730e-20
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    4 FDETWSYTHGEVVGETGGVCNWKNVTPGTMDMPTCVKGTCGGHKEYDVLPF 156
            FDETW Y H  VVGETG VCNW +V PG+ DMPTCVKG CGGH E D+LPF
Sbjct:  562 FDETWGYAHSSVVGETGTVCNWDDVVPGSGDMPTCVKGICGGHNEDDLLPF 612
[Close]
BLAST of mRNA_H-paniculata_contig59729.13625.1 vs. uniprot
Match: A0A6H5LKB4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LKB4_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.030e-19
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    4 FDETWSYTHGEVVGETGGVCNWKNVTPGTMDMPTCVKGTCGGHKEYDVLPF 156
            FDETW YTH  VVGETG VCNW +V PG+ DMPTC+ G CGGH E D+LPF
Sbjct:  562 FDETWGYTHTSVVGETGTVCNWDDVVPGSGDMPTCITGICGGHNEDDLLPF 612
[Close]
BLAST of mRNA_H-paniculata_contig59729.13625.1 vs. uniprot
Match: D7FSP4_ECTSI (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSP4_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 5.010e-18
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    4 FDETWSYTHGEVVGETGGVCNWKNVTPGTMDMPTCVKGTCGGHKEYDVLPF 156
            F E W YTHG VVGETG VC+W  V  GT+DMPTCVKG CGGH   D+LPF
Sbjct:  589 FSEDWGYTHGNVVGETGMVCDWSGVRQGTLDMPTCVKGICGGHSAGDLLPF 639
[Close]
BLAST of mRNA_H-paniculata_contig59729.13625.1 vs. uniprot
Match: D7G0J9_ECTSI (PKD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J9_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.890e-16
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 DETWSYTHGEVVGETGGVCNWKNVTPGTMDMPTCVKGTCGGHKEYDVLPF 156
            DETW Y+HG VVGETG VC+W +V  G++DMPTC KG CGGH   D+LPF
Sbjct:  572 DETWDYSHGWVVGETGTVCDWDDVREGSLDMPTCRKGICGGHGADDLLPF 621
[Close]
BLAST of mRNA_H-paniculata_contig59729.13625.1 vs. uniprot
Match: A0A6H5L3M0_9PHAE (PKD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.530e-15
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    7 DETWSYTHGEVVGETGGVCNWKNVTPGTMDMPTCVKGTCGGHKEYDVLPF 156
            DETW Y+HG VVGETG VC+W  V    +DMP+CV+G CGGH   D+LPF
Sbjct:  567 DETWGYSHGHVVGETGVVCDWSGVGDDFLDMPSCVRGICGGHGVDDMLPF 616
[Close]
BLAST of mRNA_H-paniculata_contig59729.13625.1 vs. uniprot
Match: F0Y7W9_AURAN (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7W9_AURAN)

HSP 1 Score: 66.2 bits (160), Expect = 2.190e-11
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 TFDETWSYTHG-EVVGETGGVCNWKNVTPGTMDMPTCVKGTCGGHKEYDVLPF 156
            +F E+W Y+H  E+  +TG VC+W  V P +M++PTC K TC GHK  D+LPF
Sbjct:  563 SFSESWGYSHAQELPSDTGIVCDWSGVDPASMELPTCAKETCPGHKGDDLLPF 615
[Close]
BLAST of mRNA_H-paniculata_contig59729.13625.1 vs. uniprot
Match: A0A7S2GBA7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GBA7_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 6.960e-5
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:   16 WSYTH-GEVVGETGGVCNWKNVTPGTMDMPTCVKGTCGGHKEYDVLPF 156
            W Y H G    +T  +C W +VT   M++PTCV G+C GH++ D+LP 
Sbjct:  186 WDYYHDGMSPSDTHKICQWGDVTG--MELPTCVSGSCQGHRKDDMLPM 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59729.13625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G0J8_ECTSI8.730e-2072.55Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A6H5LKB4_9PHAE3.030e-1970.59TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D7FSP4_ECTSI5.010e-1868.63PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G0J9_ECTSI2.890e-1666.00PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L3M0_9PHAE6.530e-1562.00PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
F0Y7W9_AURAN2.190e-1150.94Tyrosinase_Cu-bd domain-containing protein n=1 Tax... [more]
A0A7S2GBA7_9STRA6.960e-543.75Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59729contigH-paniculata_contig59729:252..407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D7G0J8
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2D2AI@1,2SM4K@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930659.2675762-CDS-H-paniculata_contig59729:251..4071622930659.2675762-CDS-H-paniculata_contig59729:251..407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59729 252..407 -
1691481393.4426668-CDS-H-paniculata_contig59729:251..4071691481393.4426668-CDS-H-paniculata_contig59729:251..407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59729 252..407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59729.13625.1prot_H-paniculata_contig59729.13625.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59729 252..407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59729.13625.1

>prot_H-paniculata_contig59729.13625.1 ID=prot_H-paniculata_contig59729.13625.1|Name=mRNA_H-paniculata_contig59729.13625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
TFDETWSYTHGEVVGETGGVCNWKNVTPGTMDMPTCVKGTCGGHKEYDVL
PF
back to top

mRNA from alignment at H-paniculata_contig59729:252..407-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59729.13625.1 ID=mRNA_H-paniculata_contig59729.13625.1|Name=mRNA_H-paniculata_contig59729.13625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig59729:252..407- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTTCGATGAAACTTGGTCATACACGCACGGGGAAGTCGTCGGAGAGAC
CGGAGGCGTCTGCAACTGGAAGAACGTCACGCCGGGCACAATGGACATGC
CAACGTGCGTGAAGGGGACATGCGGAGGTCACAAAGAGTACGACGTGCTC
CCGTTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig59729:252..407-

>mRNA_H-paniculata_contig59729.13625.1 ID=mRNA_H-paniculata_contig59729.13625.1|Name=mRNA_H-paniculata_contig59729.13625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig59729:252..407- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTTCGATGAAACTTGGTCATACACGCACGGGGAAGTCGTCGGAGAGAC
CGGAGGCGTCTGCAACTGGAAGAACGTCACGCCGGGCACAATGGACATGC
CAACGTGCGTGAAGGGGACATGCGGAGGTCACAAAGAGTACGACGTGCTC
CCGTTTACGTTCGATGAAACTTGGTCATACACGCACGGGGAAGTCGTCGG
AGAGACCGGAGGCGTCTGCAACTGGAAGAACGTCACGCCGGGCACAATGG
ACATGCCAACGTGCGTGAAGGGGACATGCGGAGGTCACAAAGAGTACGAC
GTGCTCCCGTTT
back to top