mRNA_H-paniculata_contig5972.13624.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5972.13624.1
Unique NamemRNA_H-paniculata_contig5972.13624.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5972.13624.1 vs. uniprot
Match: F6XJN3_MOUSE (Coatomer subunit alpha (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=F6XJN3_MOUSE)

HSP 1 Score: 181 bits (459), Expect = 6.850e-57
Identity = 80/105 (76.19%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:    1 QVKLWRMNETKAWEVHTMTGHTNNVSCVIFHPKRELIVSNSEDRSIRVWDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHGRM 315
            QVK+WRMNE+KAWEV T  GH NNVSC +FHP++ELI+SNSED+SIRVWD+S+R GVQTFRR++DRFW+LAAHP  NL AAGHD GMIVFKLERERPAY  HG M
Sbjct:    4 QVKIWRMNESKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLERERPAYAVHGNM 108
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BLAST of mRNA_H-paniculata_contig5972.13624.1 vs. uniprot
Match: UPI00138FF18C (coatomer subunit alpha-like n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FF18C)

HSP 1 Score: 177 bits (449), Expect = 3.180e-53
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:    1 QVKLWRMNETKAWEVHTMTGHTNNVSCVIFHPKRELIVSNSEDRSIRVWDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHG 309
            QVKLWRMN++KAWEV T  GH NNVSC +FHP++EL++SNSED+SIRVWD+S+R GVQTFRRE+DRFW +AAHP  NL AAGHDSGMIVFKLERERPAY  HG
Sbjct:   12 QVKLWRMNDSKAWEVDTCRGHYNNVSCALFHPRQELMLSNSEDKSIRVWDMSKRTGVQTFRREHDRFWTIAAHPTLNLFAAGHDSGMIVFKLERERPAYAVHG 114
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BLAST of mRNA_H-paniculata_contig5972.13624.1 vs. uniprot
Match: A0A2L0C058_9COLE (Coatomer alpha subunit (Fragment) n=1 Tax=Derodontus sp. CSR091 TaxID=2055390 RepID=A0A2L0C058_9COLE)

HSP 1 Score: 171 bits (433), Expect = 8.630e-52
Identity = 72/105 (68.57%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    1 QVKLWRMNETKAWEVHTMTGHTNNVSCVIFHPKRELIVSNSEDRSIRVWDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHGRM 315
            Q+KLWRMNE+KAWEV T  GH NNVSCV+FHP++EL++SNSED+SIRVWD+++R  + TFRRE++RFW+L +HP  NL AAGHD+GMI+FKLERERPAY  HG +
Sbjct:    4 QIKLWRMNESKAWEVDTCRGHYNNVSCVLFHPRQELLISNSEDKSIRVWDMTKRTCLHTFRREHERFWVLTSHPSLNLFAAGHDTGMIIFKLERERPAYTVHGNL 108
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BLAST of mRNA_H-paniculata_contig5972.13624.1 vs. uniprot
Match: A0A2L0C039_9COLE (Coatomer alpha subunit (Fragment) n=1 Tax=Noteucinetus sp. CSR103 TaxID=2055468 RepID=A0A2L0C039_9COLE)

HSP 1 Score: 171 bits (433), Expect = 8.630e-52
Identity = 73/104 (70.19%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:    4 VKLWRMNETKAWEVHTMTGHTNNVSCVIFHPKRELIVSNSEDRSIRVWDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHGRM 315
            +KLWRMN+ KAWEV T  GH NNVSCV+FHP++EL++SNSED+SIRVWDIS+R  + TFRRE++RFW+L +HP  NL AAGHDSGMI+FKLERERPAY  HG +
Sbjct:    6 IKLWRMNDMKAWEVDTCRGHYNNVSCVLFHPRQELLLSNSEDKSIRVWDISKRTSMHTFRREHERFWVLTSHPSLNLFAAGHDSGMIIFKLERERPAYTVHGNL 109
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BLAST of mRNA_H-paniculata_contig5972.13624.1 vs. uniprot
Match: A0A5D6XEH5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XEH5_9STRA)

HSP 1 Score: 181 bits (460), Expect = 5.730e-51
Identity = 83/96 (86.46%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:   19 MNETKAWEVHTMTGHTNNVSCVIFHPKRELIVSNSEDRSIRVWDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTH 306
            MNETKAWEV TM GHTNNVSCV+FHP+ ELI+SNSEDRSIRVWDIS+RMG+QTFRRENDRFWI+ AHP QNLLAAGHDSGMIVFKLERERPA D H
Sbjct:    1 MNETKAWEVDTMRGHTNNVSCVLFHPRHELIISNSEDRSIRVWDISKRMGLQTFRRENDRFWIMQAHPTQNLLAAGHDSGMIVFKLERERPAMDLH 96
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BLAST of mRNA_H-paniculata_contig5972.13624.1 vs. uniprot
Match: A0A811SNZ5_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811SNZ5_9POAL)

HSP 1 Score: 179 bits (453), Expect = 5.090e-50
Identity = 79/103 (76.70%), Postives = 93/103 (90.29%), Query Frame = 1 
Query:    1 QVKLWRMNETKAWEVHTMTGHTNNVSCVIFHPKRELIVSNSEDRSIRVWDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHG 309
            QVK+WRMN+TKAWEV T+ GH NNVSCV+FH K+++IVSNSED+SIR+WD ++R G+QTFRRE+DRFWILAAHPE NLLAAGHDSGMIVFKLERERPA+   G
Sbjct:  178 QVKIWRMNDTKAWEVDTLRGHMNNVSCVLFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKLERERPAFCVSG 280
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BLAST of mRNA_H-paniculata_contig5972.13624.1 vs. uniprot
Match: M4D5U2_BRARP (Coatomer subunit alpha n=13 Tax=Brassicaceae TaxID=3700 RepID=M4D5U2_BRARP)

HSP 1 Score: 171 bits (432), Expect = 3.680e-47
Identity = 78/103 (75.73%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:    1 QVKLWRMNETKAWEVHTMTGHTNNVSCVIFHPKRELIVSNSEDRSIRVWDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHG 309
            QVKLWR NETKAWEV T+ GH NNVS V+FH K+++IVSNSED+SIRVWD ++R G+QTFRRE+DRFWILA HPE NLLAAGHD+GMIVFKLERERPA+   G
Sbjct:  194 QVKLWRTNETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILAVHPEINLLAAGHDNGMIVFKLERERPAFALSG 296
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BLAST of mRNA_H-paniculata_contig5972.13624.1 vs. uniprot
Match: A0A7J7MN17_9MAGN (Coatomer subunit alpha n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MN17_9MAGN)

HSP 1 Score: 170 bits (430), Expect = 6.870e-47
Identity = 80/119 (67.23%), Postives = 94/119 (78.99%), Query Frame = 1 
Query:    1 QVKLWRMN----------------ETKAWEVHTMTGHTNNVSCVIFHPKRELIVSNSEDRSIRVWDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHG 309
            QVKLWRMN                +TKAWEV T+ GH NNVSCV+FH K+++IVSNSED+SIRVWD+++R GVQTFRRE+DRFW+LA+HPE NLLAAGHDSGMIVFKLERERPA+   G
Sbjct:  227 QVKLWRMNGISEKPVSCVIWQYPIDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWVLASHPEMNLLAAGHDSGMIVFKLERERPAFSVIG 345
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BLAST of mRNA_H-paniculata_contig5972.13624.1 vs. uniprot
Match: UPI001B7DB9CB (coatomer subunit alpha n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7DB9CB)

HSP 1 Score: 169 bits (427), Expect = 1.740e-46
Identity = 76/114 (66.67%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:    1 QVKLWRMN---------ETKAWEVHTMTGHTNNVSCVIFHPKRELIVSNSEDRSIRVWDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHGRM 315
            QVK+WRM          E+KAWE+ T  GH NNVSC +FHP++ELI+SNSED+SIRVWD+S+R GVQTFRR++DRFW+L AHP  NL AAGHDSGM+VFKLERERPAY  HG +
Sbjct:  228 QVKIWRMTSKATPPSKLESKAWELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAHPNLNLFAAGHDSGMLVFKLERERPAYSVHGNL 341
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BLAST of mRNA_H-paniculata_contig5972.13624.1 vs. uniprot
Match: A0A0H5RHG9_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RHG9_9EUKA)

HSP 1 Score: 151 bits (382), Expect = 1.120e-45
Identity = 66/96 (68.75%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 QVKLWRMNETKAWEVHTMTGHTNNVSCVIFHPKRELIVSNSEDRSIRVWDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERER 288
            +VKLWRM++ KAWEV TM GH NNVSC IFHP+ ELI+SNSED+SIRVWD++++   +  RRE+DR+WILAAHP  N+LAAGHDSGM +FKL+RER
Sbjct:   10 EVKLWRMSDIKAWEVDTMRGHINNVSCAIFHPREELIISNSEDKSIRVWDMTRQNAPRAIRRESDRYWILAAHPTLNILAAGHDSGMFMFKLDRER 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5972.13624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F6XJN3_MOUSE6.850e-5776.19Coatomer subunit alpha (Fragment) n=1 Tax=Mus musc... [more]
UPI00138FF18C3.180e-5376.70coatomer subunit alpha-like n=1 Tax=Nematostella v... [more]
A0A2L0C058_9COLE8.630e-5268.57Coatomer alpha subunit (Fragment) n=1 Tax=Derodont... [more]
A0A2L0C039_9COLE8.630e-5270.19Coatomer alpha subunit (Fragment) n=1 Tax=Noteucin... [more]
A0A5D6XEH5_9STRA5.730e-5186.46Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A811SNZ5_9POAL5.090e-5076.70Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
M4D5U2_BRARP3.680e-4775.73Coatomer subunit alpha n=13 Tax=Brassicaceae TaxID... [more]
A0A7J7MN17_9MAGN6.870e-4767.23Coatomer subunit alpha n=1 Tax=Kingdonia uniflora ... [more]
UPI001B7DB9CB1.740e-4666.67coatomer subunit alpha n=1 Tax=Polyodon spathula T... [more]
A0A0H5RHG9_9EUKA1.120e-4568.75Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5972contigH-paniculata_contig5972:11941..12989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score167.9
Seed ortholog evalue2.3e-39
Seed eggNOG ortholog4555.Si000177m
KEGG koko:K05236
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
EggNOG OGs37P26@33090,3GD58@35493,3ICZS@38820,3KTFH@4447,KOG0292@1,KOG0292@2759
COG Functional cat.U
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons2
Model size315
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5972.13624.1prot_H-paniculata_contig5972.13624.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5972 11959..12989 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930659.192155-UTR-H-paniculata_contig5972:11940..119581622930659.192155-UTR-H-paniculata_contig5972:11940..11958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5972 11941..11958 +
1691481393.4146588-UTR-H-paniculata_contig5972:11940..119581691481393.4146588-UTR-H-paniculata_contig5972:11940..11958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5972 11941..11958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930659.2061968-CDS-H-paniculata_contig5972:11958..120811622930659.2061968-CDS-H-paniculata_contig5972:11958..12081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5972 11959..12081 +
1691481393.4247358-CDS-H-paniculata_contig5972:11958..120811691481393.4247358-CDS-H-paniculata_contig5972:11958..12081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5972 11959..12081 +
1622930659.2270775-CDS-H-paniculata_contig5972:12815..129891622930659.2270775-CDS-H-paniculata_contig5972:12815..12989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5972 12816..12989 +
1691481393.433159-CDS-H-paniculata_contig5972:12815..129891691481393.433159-CDS-H-paniculata_contig5972:12815..12989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5972 12816..12989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5972.13624.1

>prot_H-paniculata_contig5972.13624.1 ID=prot_H-paniculata_contig5972.13624.1|Name=mRNA_H-paniculata_contig5972.13624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MNETKAWEVHTMTGHTNNVSCVIFHPKRELIVSNSEDRSIRVWDISQRMG
VQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHGRM
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mRNA from alignment at H-paniculata_contig5972:11941..12989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5972.13624.1 ID=mRNA_H-paniculata_contig5972.13624.1|Name=mRNA_H-paniculata_contig5972.13624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1049bp|location=Sequence derived from alignment at H-paniculata_contig5972:11941..12989+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGAAGCTTTGGCGCATGAATGAGACCAAGGCTTGGGAGGTCCATAC
CATGACTGGACACACGAACAACGTGTCCTGCGTGATATTCCACCCCAAGC
GCGAGCTCATCGTCAGCAACAGCGAAGACCGCTCGATCCGGGTGAGTACG
AAGGGGGTTACCAACGTTATATATTTCGAATTTGGAACGCTTAGCGTCAA
GTTCAATTTTTTTCAAGAATTCTTCGTGATGAGCACAAAAATTGCTGTCG
AAGATGAGATTGACGGAGTTTTTTTCGCGATGGGAGATTGAGGTGGTCGT
CATAGCCCGGGGGCGGGGGGGCGTTTGTGTTCTGCAGATGTGCCCCATGA
GAGTCCCTCGGTATCTGTGGAGACATGTACGGAGAAAACGTGTAGAAAAG
TTCCTGACTAAGTTGCAGGGGGCGTAGTTGTTGTCTTCTCTTTTTCGCGC
GCAGGTGTGGCGTTTGTGTCAGTTTCTCCTGTCTACTGTCGCTGGTCACG
TGATGTGTCGTAATGGCAGTACGCACCAATGCCTTTCAGTTCAGTCAGGT
CCTGTTTTTAGCTTTCGTTATGTGCCTCAGATGCAGTGCTGCAGCAGCAG
CACCTAGTCACGTTACGGGAGGGGGAGGGGGGGGGGCACTTTATTGGAAT
AAGAGAGTCTCGTTAGAGTCGCTGCGTGCGTATATATATATATATATGTC
GTGACTACGTTTACCGTTCTAGCGCCACTTTGTCATTATTCATAATGTAC
GATAAATAGATGACTTCTGCAGTACGAGTCTGCCATCTTTTTTTCCCCCT
TCGTTGACGAAGCCAAAAACACTCCATTATTCGTTGCCTACCGATACTAC
CATCGGCTACCGTGTGCTGTTGAAGGTGTGGGATATCAGCCAGCGCATGG
GCGTACAGACATTCCGTCGCGAGAACGACCGTTTTTGGATCTTGGCCGCA
CACCCAGAGCAGAACCTCTTGGCCGCCGGGCACGACAGCGGGATGATCGT
TTTCAAACTGGAGAGGGAGAGGCCTGCTTACGATACGCACGGTAGGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig5972:11941..12989+

>mRNA_H-paniculata_contig5972.13624.1 ID=mRNA_H-paniculata_contig5972.13624.1|Name=mRNA_H-paniculata_contig5972.13624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig5972:11941..12989+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATGAGACCAAGGCTTGGGAGGTCCATACCATGACTGGACACACGAA
CAACGTGTCCTGCGTGATATTCCACCCCAAGCGCGAGCTCATCGTCAGCA
ACAGCGAAGACCGCTCGATCCGGATGAATGAGACCAAGGCTTGGGAGGTC
CATACCATGACTGGACACACGAACAACGTGTCCTGCGTGATATTCCACCC
CAAGCGCGAGCTCATCGTCAGCAACAGCGAAGACCGCTCGATCCGGGTGT
GGGATATCAGCCAGCGCATGGGCGTACAGACATTCCGTCGCGAGAACGAC
CGTTTTTGGATCTTGGCCGCACACCCAGAGCAGAACCTCTTGGCCGCCGG
GCACGACAGCGGGATGATCGTTTTCAAACTGGAGAGGGAGAGGCCTGCTT
ACGATACGCACGGTAGGATGGTGTGGGATATCAGCCAGCGCATGGGCGTA
CAGACATTCCGTCGCGAGAACGACCGTTTTTGGATCTTGGCCGCACACCC
AGAGCAGAACCTCTTGGCCGCCGGGCACGACAGCGGGATGATCGTTTTCA
AACTGGAGAGGGAGAGGCCTGCTTACGATACGCACGGTAGGATG
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