prot_H-paniculata_contig5971.13623.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5971.13623.1
Unique Nameprot_H-paniculata_contig5971.13623.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length178
Homology
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BLAST of mRNA_H-paniculata_contig5971.13623.1 vs. uniprot
Match: A0A6H5K6P5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P5_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 1.310e-60
Identity = 107/169 (63.31%), Postives = 124/169 (73.37%), Query Frame = 0 
Query:   28 VGLSVVLGFLSFLGLIVMQDITARHFLQLSFTWPQVAVLTFSLAAVGLCIFSLASRHVSKLNTDIWEHMAELGTLFCWYAALLILWVRRPWYDTTWGDNDTLAADVIPEEGAGVAWED-------------VDGDAA-----QGEGARPTPDWAQLQADVNGK-SADLV 177
            VGLSVVLGFLSFLGLIVMQDIT+RHFL LSFTWPQVAVLTFSL AVGLCIFSLASRH SKL TD+WEHM EL TLF WYAALLILW+RRPWYDT WG+ND+++ +   EE AG+  +D             +  DAA     + +G   TP+WA++  D  GK +AD V
Sbjct:  641 VGLSVVLGFLSFLGLIVMQDITSRHFLSLSFTWPQVAVLTFSLVAVGLCIFSLASRHFSKLTTDLWEHMVELATLFSWYAALLILWIRRPWYDTAWGENDSMSLNEADEEEAGIGGDDDEEVWDAGSTRDEISEDAALSAAEKEQGREETPEWARVPTDAGGKPAADFV 809
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BLAST of mRNA_H-paniculata_contig5971.13623.1 vs. uniprot
Match: D8LKM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM2_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 6.610e-60
Identity = 108/170 (63.53%), Postives = 124/170 (72.94%), Query Frame = 0 
Query:   28 VGLSVVLGFLSFLGLIVMQDITARHFLQLSFTWPQVAVLTFSLAAVGLCIFSLASRHVSKLNTDIWEHMAELGTLFCWYAALLILWVRRPWYDTTWGDNDTLAADVIPEEGAGVAWEDVD---------GD----------AAQGEGARPTPDWAQLQADVNGK-SADLV 177
            VGLSVVLGFLSFLGLIVMQDIT+RHFL LSFTWPQVAVLTFSL AVGLCIFSLASRH SKL TD+WEHM EL TLF WYAALLILW+RRPWYDT WG+ND+++ +   EE AG+  +D D         GD          A + +G   TP+WA++  D  G  +ADLV
Sbjct:  890 VGLSVVLGFLSFLGLIVMQDITSRHFLSLSFTWPQVAVLTFSLVAVGLCIFSLASRHFSKLTTDLWEHMVELATLFSWYAALLILWIRRPWYDTAWGENDSMSLNEADEEEAGIGEDDDDEEVWEAGSAGDEISEDAALSAAEKEQGREETPEWARVPTDAGGNPAADLV 1059
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5971.13623.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6P5_9PHAE1.310e-6063.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKM2_ECTSI6.610e-6063.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..80
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..114
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..46
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 115..177
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 47..57
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 81..91
NoneNo IPR availableTMHMMTMhelixcoord: 60..82
NoneNo IPR availableTMHMMTMhelixcoord: 28..50
NoneNo IPR availableTMHMMTMhelixcoord: 95..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5971contigH-paniculata_contig5971:3279..9256 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5971.13623.1mRNA_H-paniculata_contig5971.13623.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5971 2880..10006 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5971.13623.1 ID=prot_H-paniculata_contig5971.13623.1|Name=mRNA_H-paniculata_contig5971.13623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
MVQERRRRRRRDVRCDCGNVCEDQIHMVGLSVVLGFLSFLGLIVMQDITA
RHFLQLSFTWPQVAVLTFSLAAVGLCIFSLASRHVSKLNTDIWEHMAELG
TLFCWYAALLILWVRRPWYDTTWGDNDTLAADVIPEEGAGVAWEDVDGDA
AQGEGARPTPDWAQLQADVNGKSADLV*
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