mRNA_H-paniculata_contig597.13621.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig597.13621.1
Unique NamemRNA_H-paniculata_contig597.13621.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig597.13621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig597contigH-paniculata_contig597:29709..30108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size401
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930658.7184558-UTR-H-paniculata_contig597:29708..297691622930658.7184558-UTR-H-paniculata_contig597:29708..29769Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig597 29709..29769 +
1691481393.1828532-UTR-H-paniculata_contig597:29708..297691691481393.1828532-UTR-H-paniculata_contig597:29708..29769Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig597 29709..29769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930658.7369585-CDS-H-paniculata_contig597:29769..301081622930658.7369585-CDS-H-paniculata_contig597:29769..30108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig597 29770..30108 +
1691481393.191482-CDS-H-paniculata_contig597:29769..301081691481393.191482-CDS-H-paniculata_contig597:29769..30108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig597 29770..30108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig597.13621.1prot_H-paniculata_contig597.13621.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig597 29770..30108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig597.13621.1

>prot_H-paniculata_contig597.13621.1 ID=prot_H-paniculata_contig597.13621.1|Name=mRNA_H-paniculata_contig597.13621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MCVLPRHLRMQNRIPVVEASVGLGCKVLFSSRSFFVCFGHGFIPAHSPRR
AHIALPLVFEKLNTLWLFWIISEKLRVRVKGFIPDSNDNFNLSSGAGRSF
EINNISDSLAANR
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mRNA from alignment at H-paniculata_contig597:29709..30108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig597.13621.1 ID=mRNA_H-paniculata_contig597.13621.1|Name=mRNA_H-paniculata_contig597.13621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=400bp|location=Sequence derived from alignment at H-paniculata_contig597:29709..30108+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATTGATCGAAGGCTGCCACTATCGGCGCCACGTGTTCCCCCCCGTTCT
CTCCCCCTCTCATGTGCGTATTGCCTAGGCACCTGCGAATGCAAAACCGG
ATTCCAGTCGTGGAGGCCTCGGTGGGGCTTGGTTGTAAAGTACTCTTTTC
TTCCAGAAGCTTTTTCGTCTGTTTTGGGCACGGTTTTATCCCGGCACATT
CCCCGAGGCGGGCTCACATCGCCCTCCCTCTAGTATTCGAAAAATTAAAT
ACCTTATGGTTGTTTTGGATTATTTCGGAAAAGCTGCGCGTACGGGTAAA
AGGTTTTATACCCGACTCCAATGATAATTTTAACCTTTCTTCTGGTGCAG
GACGCAGTTTCGAAATAAATAATATATCTGACAGTCTCGCCGCCAATCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig597:29709..30108+

>mRNA_H-paniculata_contig597.13621.1 ID=mRNA_H-paniculata_contig597.13621.1|Name=mRNA_H-paniculata_contig597.13621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig597:29709..30108+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCGTATTGCCTAGGCACCTGCGAATGCAAAACCGGATTCCAGTCGT
GGAGGCCTCGGTGGGGCTTGGTTGTAAAGTACTCTTTTCTTCCAGAAGCT
TTTTCGTCTGTTTTGGGCACGGTTTTATCCCGGCACATTCCCCGAGGCGG
GCTCACATCGCCCTCCCTCTAGTATTCGAAAAATTAAATACCTTATGGTT
GTTTTGGATTATTTCGGAAAAGCTGCGCGTACGGGTAAAAGGTTTTATAC
CCGACTCCAATGATAATTTTAACCTTTCTTCTGGTGCAGGACGCAGTTTC
GAAATAAATAATATATCTGACAGTCTCGCCGCCAATCGGATGTGCGTATT
GCCTAGGCACCTGCGAATGCAAAACCGGATTCCAGTCGTGGAGGCCTCGG
TGGGGCTTGGTTGTAAAGTACTCTTTTCTTCCAGAAGCTTTTTCGTCTGT
TTTGGGCACGGTTTTATCCCGGCACATTCCCCGAGGCGGGCTCACATCGC
CCTCCCTCTAGTATTCGAAAAATTAAATACCTTATGGTTGTTTTGGATTA
TTTCGGAAAAGCTGCGCGTACGGGTAAAAGGTTTTATACCCGACTCCAAT
GATAATTTTAACCTTTCTTCTGGTGCAGGACGCAGTTTCGAAATAAATAA
TATATCTGACAGTCTCGCCGCCAATCGG
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