mRNA_H-paniculata_contig5969.13618.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5969.13618.1
Unique NamemRNA_H-paniculata_contig5969.13618.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5969.13618.1 vs. uniprot
Match: A0A6S7HIQ4_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HIQ4_PARCT)

HSP 1 Score: 87.0 bits (214), Expect = 7.130e-19
Identity = 38/73 (52.05%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    7 TTLFEDNKSAINLSRGPGAHCRTKHIEVRWHGIREWIREGVLALKYVQTGDQLADMLTKGLSRVQFQRLRNLL 225
            T ++EDN++AI++++ P +H RTKHI+ R+H IRE ++ GV+AL+YV T + +AD+LTK LS+ QF +LRN L
Sbjct:  213 TVIYEDNQAAISIAKNPVSHARTKHIDTRYHFIREELQSGVIALEYVPTSEMVADILTKPLSKSQFVKLRNAL 285          
BLAST of mRNA_H-paniculata_contig5969.13618.1 vs. uniprot
Match: A0A7H4LDI7_WHEAT (Genome assembly, chromosome: II n=2 Tax=Triticinae TaxID=1648030 RepID=A0A7H4LDI7_WHEAT)

HSP 1 Score: 88.6 bits (218), Expect = 8.900e-19
Identity = 40/72 (55.56%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 GSTTLFEDNKSAINLSRGPGAHCRTKHIEVRWHGIREWIREGVLALKYVQTGDQLADMLTKGLSRVQFQRLR 216
            G+TT+F DNKSAI L + P  H R+KHI+VR+H IR+ + EG + +K++ TGDQLAD+ TK L R +FQ+LR
Sbjct: 1216 GATTIFIDNKSAIQLCKNPVCHDRSKHIDVRFHFIRKCVEEGKIRVKHIATGDQLADIFTKSLGRTRFQQLR 1287          
BLAST of mRNA_H-paniculata_contig5969.13618.1 vs. uniprot
Match: A0A0L6WME8_9AGAR (Copia protein n=2 Tax=Termitomyces sp. J132 TaxID=1306850 RepID=A0A0L6WME8_9AGAR)

HSP 1 Score: 81.6 bits (200), Expect = 1.800e-18
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    7 TTLFEDNKSAINLSRGPGAHCRTKHIEVRWHGIREWIREGVLALKYVQTGDQLADMLTKGLSRVQFQRLRNLL 225
            TT+F DNK+AI+LS  P AH R KH ++++H IRE    G +A+KYV T D +ADM TK L +  F RLR++L
Sbjct:   29 TTMFCDNKAAISLSEDPTAHARVKHFDIKYHFIREHAHNGEIAIKYVNTRDNIADMFTKPLPKPLFVRLRHML 101          
BLAST of mRNA_H-paniculata_contig5969.13618.1 vs. uniprot
Match: A0A2K3K827_TRIPR (Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K827_TRIPR)

HSP 1 Score: 80.1 bits (196), Expect = 4.890e-18
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   13 LFEDNKSAINLSRGPGAHCRTKHIEVRWHGIREWIREGVLALKYVQTGDQLADMLTKGLSRVQFQRLR 216
            L+ DN SAIN+S+ P  H RTKHI++R H IR+ + EGV+ L+++ T +QLAD+ TK L  VQF++LR
Sbjct:   11 LYCDNLSAINISKNPIQHSRTKHIDIRHHFIRDLVEEGVVKLEHIATEEQLADIFTKALDAVQFEKLR 78          
BLAST of mRNA_H-paniculata_contig5969.13618.1 vs. uniprot
Match: UPI001E1CA6F9 (LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CA6F9)

HSP 1 Score: 85.5 bits (210), Expect = 1.080e-17
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    7 TTLFEDNKSAINLSRGPGAHCRTKHIEVRWHGIREWIREGVLALKYVQTGDQLADMLTKGLSRVQFQRLR 216
            T L  DNKSAI L + P  H RTKHIE R+H IRE +++G +A+ Y+ TG+QLAD++TK L RV+FQ LR
Sbjct: 1352 TPLLIDNKSAIQLCKNPVFHDRTKHIETRFHFIRECVQDGRIAVDYIHTGEQLADIMTKALPRVKFQELR 1421          
BLAST of mRNA_H-paniculata_contig5969.13618.1 vs. uniprot
Match: UPI001E1BA65C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA65C)

HSP 1 Score: 82.0 bits (201), Expect = 1.450e-17
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   13 LFEDNKSAINLSRGPGAHCRTKHIEVRWHGIREWIREGVLALKYVQTGDQLADMLTKGLSRVQFQRLR 216
            LF DN+SAI + R P  H RTKHI+VR+H IRE   +GV+  KYV T +QLAD+LTK L+  +FQRLR
Sbjct:  130 LFMDNQSAIRIIRNPELHQRTKHIDVRYHFIRELQEQGVIDAKYVNTNEQLADILTKPLAAPRFQRLR 197          
BLAST of mRNA_H-paniculata_contig5969.13618.1 vs. uniprot
Match: A0A7D9LAD0_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LAD0_PARCT)

HSP 1 Score: 81.6 bits (200), Expect = 1.540e-17
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    7 TTLFEDNKSAINLSRGPGAHCRTKHIEVRWHGIREWIREGVLALKYVQTGDQLADMLTKGLSRVQFQRLR 216
            TT++EDN+ AI +SR P  H RTKHI++++H IRE  ++G + LKY  T + LAD+LTK LS+ QF+ LR
Sbjct:  113 TTIYEDNQGAIAMSRNPVLHKRTKHIDIKYHFIREKTQDGTIELKYCPTNEMLADILTKPLSKGQFEYLR 182          
BLAST of mRNA_H-paniculata_contig5969.13618.1 vs. uniprot
Match: UPI001ABC4BCD (secreted RxLR effector protein 161-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001ABC4BCD)

HSP 1 Score: 82.8 bits (203), Expect = 1.550e-17
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 GSTTLFEDNKSAINLSRGPGAHCRTKHIEVRWHGIREWIREGVLALKYVQTGDQLADMLTKGLSRVQFQRLR 216
            G+ T+F DNKSAI L + P  H R+KHI+VR+H IR  I E  + ++++ TGDQLADM TK L R +FQ LR
Sbjct:  170 GAVTIFVDNKSAIQLCKNPVFHDRSKHIDVRFHFIRNCIEEEKIKVEHIPTGDQLADMFTKSLGRTRFQELR 241          
BLAST of mRNA_H-paniculata_contig5969.13618.1 vs. uniprot
Match: A0A5E8B7G3_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8B7G3_9ASCO)

HSP 1 Score: 83.2 bits (204), Expect = 1.570e-17
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   10 TLFEDNKSAINLSRGPGAHCRTKHIEVRWHGIREWIREGVLALKYVQTGDQLADMLTKGLSRVQFQRLRNLL 225
            T+FEDN+  I L++ P  H RTKHI+VR+H +R +IR GV+ L+Y+ T   LADM TK L RV+F+ LR LL
Sbjct:  161 TMFEDNQGCIALAQNPVFHRRTKHIDVRYHVVRHYIRSGVIHLEYLDTQVMLADMFTKNLGRVKFETLRGLL 232          
BLAST of mRNA_H-paniculata_contig5969.13618.1 vs. uniprot
Match: A0A453SJJ3_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453SJJ3_AEGTS)

HSP 1 Score: 84.0 bits (206), Expect = 1.610e-17
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    7 TTLFEDNKSAINLSRGPGAHCRTKHIEVRWHGIREWIREGVLALKYVQTGDQLADMLTKGLSRVQFQRLR 216
            T L  DNKSAI L + P  H RTKHIE R+H IRE +++G + + Y+ TG+QLAD++TK L RV+FQ LR
Sbjct:  251 TPLLIDNKSAIQLCKNPVFHDRTKHIETRFHFIRECVQDGRIVVDYIHTGEQLADIMTKALPRVKFQELR 320          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5969.13618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S7HIQ4_PARCT7.130e-1952.05Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A7H4LDI7_WHEAT8.900e-1955.56Genome assembly, chromosome: II n=2 Tax=Triticinae... [more]
A0A0L6WME8_9AGAR1.800e-1852.05Copia protein n=2 Tax=Termitomyces sp. J132 TaxID=... [more]
A0A2K3K827_TRIPR4.890e-1852.94Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium p... [more]
UPI001E1CA6F91.080e-1757.14LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
UPI001E1BA65C1.450e-1758.82secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A7D9LAD0_PARCT1.540e-1752.86Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
UPI001ABC4BCD1.550e-1754.17secreted RxLR effector protein 161-like n=1 Tax=Ae... [more]
A0A5E8B7G3_9ASCO1.570e-1754.17Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]
A0A453SJJ3_AEGTS1.610e-1755.71Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5969contigH-paniculata_contig5969:327..557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.0
Seed ortholog evalue3.4e-14
Seed eggNOG ortholog4513.MLOC_79484.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930658.3728008-CDS-H-paniculata_contig5969:326..5571622930658.3728008-CDS-H-paniculata_contig5969:326..557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5969 327..557 +
1691481393.033653-CDS-H-paniculata_contig5969:326..5571691481393.033653-CDS-H-paniculata_contig5969:326..557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5969 327..557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5969.13618.1prot_H-paniculata_contig5969.13618.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5969 327..557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5969.13618.1

>prot_H-paniculata_contig5969.13618.1 ID=prot_H-paniculata_contig5969.13618.1|Name=mRNA_H-paniculata_contig5969.13618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
GSTTLFEDNKSAINLSRGPGAHCRTKHIEVRWHGIREWIREGVLALKYVQ
TGDQLADMLTKGLSRVQFQRLRNLLM*
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mRNA from alignment at H-paniculata_contig5969:327..557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5969.13618.1 ID=mRNA_H-paniculata_contig5969.13618.1|Name=mRNA_H-paniculata_contig5969.13618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig5969:327..557+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGCACGACATTATTTGAGGATAATAAATCAGCTATTAATCTCAGTAG GGGACCTGGCGCACACTGCAGGACAAAGCACATCGAAGTGCGCTGGCACG GAATTCGAGAGTGGATTCGGGAAGGAGTATTGGCATTGAAATACGTGCAG ACCGGCGATCAACTTGCTGACATGTTAACGAAAGGACTAAGCAGAGTGCA GTTTCAGAGACTGAGAAATTTACTCATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5969:327..557+

>mRNA_H-paniculata_contig5969.13618.1 ID=mRNA_H-paniculata_contig5969.13618.1|Name=mRNA_H-paniculata_contig5969.13618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig5969:327..557+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGCACGACATTATTTGAGGATAATAAATCAGCTATTAATCTCAGTAG
GGGACCTGGCGCACACTGCAGGACAAAGCACATCGAAGTGCGCTGGCACG
GAATTCGAGAGTGGATTCGGGAAGGAGTATTGGCATTGAAATACGTGCAG
ACCGGCGATCAACTTGCTGACATGTTAACGAAAGGACTAAGCAGAGTGCA
GTTTCAGAGACTGAGAAATTTACTCATGTGAGGGAGCACGACATTATTTG
AGGATAATAAATCAGCTATTAATCTCAGTAGGGGACCTGGCGCACACTGC
AGGACAAAGCACATCGAAGTGCGCTGGCACGGAATTCGAGAGTGGATTCG
GGAAGGAGTATTGGCATTGAAATACGTGCAGACCGGCGATCAACTTGCTG
ACATGTTAACGAAAGGACTAAGCAGAGTGCAGTTTCAGAGACTGAGAAAT
TTACTCATGTGA
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