mRNA_H-paniculata_contig5967.13616.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig5967.13616.1
Unique Name	mRNA_H-paniculata_contig5967.13616.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig5967.13616.1 vs. uniprot
Match: A0A6H5JCA5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA5_9PHAE)

HSP 1 Score: 414 bits (1065), Expect = 6.560e-131
Identity = 196/291 (67.35%), Postives = 224/291 (76.98%), Query Frame = 1

Query:    1 LDLFMESLPPGFVRCPGCPMVYELVPNEDAARGGGGGVSAQELPKGSNLSRRAAMRHSGRHRFRCPQCSASFCDSCRCLPYHIGFSCEGWVSYQAKPKCVYCGGVAQEPENTEGG-------------TSGSAGEQGGGLAAPCCGSEACNERANESCRKKLPCGHACRGPGSGDCLPCIESGCASATIDGDVEWCNVCWTESLLAAPCVQLDCGHFVHAACGREQLQKGRPTARLTFGFMSCPVCRADKALAKHPVLGKTEGIVEQLVLATEVENLAIQRLRADELPPLQ 834
            ++  +E+LPPGFV+CPGCPMVYELVPNE AARGGGG V+ +ELPKG+NLSRR+AMRH+GRHRFRCP CS  FC +CR  PYHIGF CEGW ++QAKPKC YCG  A+E     GG               G  G +G   A PCCG E C ERANE CRKKL CGH CRGPG+  C+PCIE  C SA +DG+ ++CNVCWTESLLAAPCV+L+CGHFVH +CGREQL +GRPTARLTFGFMSCPVCRADK LA H  LGK +GI EQL LA +VE LAIQRLRADELPPL+
Sbjct:  229 VEALIEALPPGFVQCPGCPMVYELVPNEAAARGGGGNVTTKELPKGANLSRRSAMRHNGRHRFRCPSCSTCFCGACRATPYHIGFDCEGWAAHQAKPKCTYCGDAAEEEPVVCGGGNDKTAAADGEEANKGGEGGEGALQAPPCCGREECRERANEGCRKKLECGHPCRGPGTAGCIPCIEPDCPSAEVDGN-DFCNVCWTESLLAAPCVKLECGHFVHVSCGREQLMRGRPTARLTFGFMSCPVCRADKVLALHLHLGKCDGIPEQLELAHQVEELAIQRLRADELPPLK 518

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BLAST of mRNA_H-paniculata_contig5967.13616.1 vs. uniprot
Match: D8LMH4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH4_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 5.680e-123
Identity = 170/255 (66.67%), Postives = 193/255 (75.69%), Query Frame = 1

Query:   61 VYELVPNEDAARGGGGGVSAQELPKGSNLSRRAAMRHSGRHRFRCPQCSASFCDSCRCLPYHIGFSCEGWVSYQAKPKCVYCGGVAQEPENTEGG-------------TSGSAGEQGGGLAAPCCGSEACNERANESCRKKLPCGHACRGPGSGDCLPCIESGCASATIDGDVEWCNVCWTESLLAAPCVQLDCGHFVHAACGREQLQKGRPTARLTFGFMSCPVCRADKALAKHPVLGKTEGIVEQLVLATEVE 786
            VYELVPNE AARGGGG V+ +ELPKG+NLSRR+AMRH+GRHRFRCP CS  FC +CR  PYHIGF CEGW ++QAKPKC YCG  A+E     GG               G  G +G   A PCCG E C ERANE CRKKL CGH CRGPG+ +C+PCIE  C SA +DG+ ++CNVCWTESLLAAPCV+L+CGHFVH +CGREQL +GRPTARLTFGFMSCPVCRADK LA HP LGK +GI EQL LA +VE
Sbjct:    7 VYELVPNEAAARGGGGNVATKELPKGANLSRRSAMRHNGRHRFRCPSCSTCFCGACRATPYHIGFDCEGWAAHQAKPKCTYCGDAAEEEPVVCGGGNDKTAAADGEEANKGGEGREGALQAPPCCGREECRERANEGCRKKLECGHPCRGPGTAECIPCIEPDCPSAEVDGN-DFCNVCWTESLLAAPCVKLECGHFVHVSCGREQLMRGRPTARLTFGFMSCPVCRADKVLALHPHLGKCDGIPEQLELAHQVE 260

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BLAST of mRNA_H-paniculata_contig5967.13616.1 vs. uniprot
Match: X6MCA5_RETFI (RING-type domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MCA5_RETFI)

HSP 1 Score: 162 bits (409), Expect = 3.120e-42
Identity = 101/278 (36.33%), Postives = 140/278 (50.36%), Query Frame = 1

Query:   10 FMESLPPGFVRCPGCPMVYELVPNEDAARGGGGGVSAQELPKGSNLSRRAAMRHSGRHRFRCPQCSASFCDSCRCLPYHIGFSCEGWVSYQAKPKCVYCGGVAQEPENTEGGTSGSAGEQGGGLAAPCCGSEACNERANESCRKKLPCGHACRG-PGSGDCLPCIESGCASAT-IDGDVEWCNVCWTESLLAAPCVQLDCGHFVHAACGREQLQKGRPTARLTFGFMSCPVCRAD-KALAKHPVLGKTEGIVEQLVLATEVENLAIQRLRADELPPLQ 834
            F+ S  P   +CP C   +       A   G    +++E             +H  R RFRC QCSA FC SC+ +PYH+G++CE W  YQ   KC +C   A   EN      GS    G GL +  C  +AC E+   SC K L CGH C G  G   CLPC++  C          E+CN+CW + L AAP ++L+CGH+ H  C   ++ +  P+AR+TFGF+SCP+C+ + K  A   +  K   + EQ+     VE L I+ L  D  P L+
Sbjct:  177 FLISSDPTMTQCPQCKNYF-------ATETGEVDYASKEKGNDGKPIGIEEHKHKARWRFRCSQCSAIFCGSCKAMPYHLGYTCETWKDYQEAKKCRFCD-KALTHENLAKPEVGS----GPGLKS-ICSDDACLEKRKWSCDKVLSCGHNCIGIRGERRCLPCLDEKCVGKNGATNSEEFCNICWVDPLKAAPTIRLECGHYFHFMCVWNKIDRRWPSARITFGFLSCPLCKKEIKHEAMREMASKHYQLKEQIT-KDAVERLKIEGL--DSAPRLK 438

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BLAST of mRNA_H-paniculata_contig5967.13616.1 vs. uniprot
Match: A0A2P6NQE7_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NQE7_9EUKA)

HSP 1 Score: 160 bits (405), Expect = 1.970e-41
Identity = 92/264 (34.85%), Postives = 131/264 (49.62%), Query Frame = 1

Query:   28 PGFVRCPGCPMVYELVPNEDAARGGGGGVSAQELPKGSNLSRRAAMRHSGRHRFRCPQCSASFCDSCRCLPYHIGFSCEGWVSYQAKPKCVYCGGVAQEPENTEGGTSGSAGEQGGGLAAPCCGSEACNERANESCRKK-LPCGHACRGP-GSGDCLPCIESGCASAT-IDGDVEWCNVCWTESLLAAPCVQLDCGHFVHAACGREQLQKGRPTARLTFGFMSCPVCRADKALAKHPVLGKTEGIVEQLVLATEVENLAIQRLR 810
            P  +RCP C    E + +          V  ++   G  +S  A + H  ++RFRC +C + FC  C+ +PYH G++CE +V Y     C YC   AQ   N                 A  C  E C +++ E+CRKK   CGH C G      CLPC+   C          ++CN+CWTE L AAPC++LDCGH  H+ C +E++ K    AR+TFGF+ CP+C   K   KHP + K    ++QL     V   A++RL+
Sbjct:  260 PNMIRCPKCRYPMEKISDNHYL------VHGEKTDDGEAMSEEAEI-HRSKNRFRCRECDSEFCAECKHIPYHNGYTCEQYVEYAQAKHCRYC--QAQLQSN-----------------ADVCNEEECKKKSKEACRKKHRDCGHPCDGIYKESPCLPCLYEDCQKQEGTQKREDFCNICWTEELGAAPCIRLDCGHIFHSHCVKEKIDKKWSGARITFGFLDCPLC---KQSMKHPSIEKQIDPMQQL--HKHVSERAVERLK 492

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BLAST of mRNA_H-paniculata_contig5967.13616.1 vs. uniprot
Match: A0A7S1KSY5_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KSY5_9EUKA)

HSP 1 Score: 150 bits (379), Expect = 4.920e-38
Identity = 90/267 (33.71%), Postives = 130/267 (48.69%), Query Frame = 1

Query:   34 FVRCPGCPMVYELVPNEDAARGGGGGVSAQELPKGSNLSRRAAMRHSGRHRFRCPQCSASFCDSCRCLPYHIGFSCEGWVSYQAKPKCVYC-GGVAQEPENTEGGTSGSAGEQGGGLAAPCCGSEACNERANESCRKK-LPCGHACRGP-GSGDCLPCIESGCASATIDGDV-EWCNVCWTESLLAAPCVQLDCGHFVHAACGREQLQKGRPTARLTFGFMSCPVCRADKALAKHPVLGKTEGIVEQLVLATEVENLAIQRLRADEL 822
            FV CP C   +E VP            S +++ K  N+  +    H  ++RFRC +C   FC  C+ +PYH  F+C     Y    KC +C  G+A    ++   T               C S+ CNE+A+  C K+   C H C G      CLPC+    A   I  D  ++CN+C+ E L  APC+QL+C H  H AC + ++Q G P AR+TFGF+ CP+C+    L +HP+L +   +   L L   +E  A+QRL    L
Sbjct:  174 FVHCPSCQHTFESVPQPRH--------SLEQMLKERNIPIKETNIHREQNRFRCRECDTEFCARCKHVPYHDNFTCSQHQRYLKAHKCRFCHNGIANPTIDSHTHTD-----------TLVCDSDHCNEKASIVCTKRHSKCDHPCNGVRDEAQCLPCLRCASAQGAIGQDPSDFCNICYVEELHEAPCIQLECNHIFHFACLKRKIQAGYPGARITFGFLKCPLCQE---LMQHPLLDQL--MEPHLRLKKSLEEKALQRLEYQNL 416

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BLAST of mRNA_H-paniculata_contig5967.13616.1 vs. uniprot
Match: X6NC07_RETFI (RING-type domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NC07_RETFI)

HSP 1 Score: 145 bits (366), Expect = 2.590e-36
Identity = 91/278 (32.73%), Postives = 135/278 (48.56%), Query Frame = 1

Query:   10 FMESLPPGFVRCPGCPMVYELVPNEDAARGGGGGVSAQELPKGSNLSRRAAMRHSGRHRFRCPQCSASFCDSCRCLPYHIGFSCEGWVSYQAKPKCVYCGGVAQEPENTEGGTSGSAGEQGGGLAAPCCGSEACNERANESC-RKKLPCGHACRGPG-SGDCLPCIESGCASATIDGDV-----EWCNVCWTESLLAAPCVQLDCGHFVHAACGREQLQKGRPTARLTFGFMSCPVCRADKALAKHPVLGKTEGIVEQLVLATEVENLAIQRLRADEL 822
            F+ S  P   +CP C   +     E          S +    G  +      +H  R RFRC +CS  FC SC+  PYHIG++CE W  Y+   KC +C       +NT    SGS    G GL++ C    +C E+   SC R    CGH C G      CLPC++  C SA  + D      E+CN+CW + L A P ++LDCGH  H  C   ++ +  P+AR+TFGF++CP+C+ +    +H  +   +   +   L  ++   A+ RL+ + L
Sbjct:  163 FLISSDPSMTQCPQCKNYFVTETGEVEH------TSKENRLDGKPIGMEE-QKHKARWRFRCSECSTIFCGSCKTSPYHIGYTCETWKHYREAQKCRFCD-KPLTADNTAKPESGS----GPGLSSVC-SDASCLEKRKWSCDRVHDKCGHNCIGIRCERRCLPCLDKSCVSANGNADSTTNSEEFCNICWVDPLKAGPTIRLDCGHHFHFMCVWNKVDRRWPSARITFGFLNCPLCKRE---IRHEAM--RDIATKHFQLKEQITKDAVDRLKIEGL 422

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BLAST of mRNA_H-paniculata_contig5967.13616.1 vs. uniprot
Match: A0A7S0V5J2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V5J2_9CRYP)

HSP 1 Score: 138 bits (348), Expect = 1.760e-34
Identity = 86/246 (34.96%), Postives = 117/246 (47.56%), Query Frame = 1

Query:  160 AMRHSGRHRFRCPQC-SASFCDSCRCLPYHIGFSCEGWVSYQAKPKCVYCGG--VAQEPENTEGGTSGSAGEQGGGLAAPC--------------------------CGSEACNERANESCRKKLPCGHACRGP-GSGDCLPCIESGCASATIDGDVEWCNVCWTESLLAAPCVQLDCGHFVHAACGREQLQKGRPTARLTFGFMSCPVCRADKALAKHPVLGKTEGIVEQLVLATEVENLAIQRL 807
            A+RH  R+RFRC +C    FC  C   PYH+GF+CEG+ ++ AK KC +CG     + P   +  + G+       L A C                          C  E C   A  +C + +PCGH C G  G   CL C++   + +  D D  +CNVCW  SL  APCV+L CGH  H  C  +Q++ G P AR+TFGF+ CP+C   K     P +   + + E   L   V   A QRL
Sbjct:  116 AVRHRDRYRFRCRRCPDTEFCAVCSATPYHLGFTCEGFKAHMAKRKCRFCGSEVTGESPLILKEESRGNKKHLHKVLHARCVETIPKGASLQELLDLAQRTDELASVCRQEECANHAAAACTRVMPCGHLCLGTRGEEACLGCLKCSPSDSGQDAD-SFCNVCWVSSLSEAPCVRLTCGHVFHKHCLEKQVKTGYPGARVTFGFLECPLC---KRHLDAPAIA--DAVAEGAALYKSVRVKAEQRL 355

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BLAST of mRNA_H-paniculata_contig5967.13616.1 vs. uniprot
Match: A0A0H5QUE2_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QUE2_9EUKA)

HSP 1 Score: 137 bits (346), Expect = 4.320e-34
Identity = 85/271 (31.37%), Postives = 134/271 (49.45%), Query Frame = 1

Query:   31 GFVRCPGCPMVYE------LVPNEDAARGGGGGVSAQELPKGSNLSRRAAMRHSGRHRFRCPQCSASFCDSCRCLPYHIGFSCEGWVSYQAKPKCVYCGGVAQEPENTEGGTSGSAGEQGGGLAAPCCGSEACNERANESCRKKLPCGHACRGP-GSGDCLPCIESGCASATIDGDVEWCNVCWTESLLAAPCVQLDCGHFVHAACGREQLQKGRPTARLTFGFMSCPVCRADKALAKHPVLGKTEGIVEQLVLATEVENLAIQRLRADEL 822
            GF+RCP C M++       L P +D  +             GS++S   A+R    HR++C  C   +CD C  +PYH GF C  + +Y     C +C  V     N E   + S+           C S  C  +A  SC K L C H+C G  G   C PC+    A   I  D ++CN+CW ++L ++P ++L CGH  H +C   ++ K    +R++FG+++CP+C+ +    +HP LG    I ++  L  ++ +LAI RL  D++
Sbjct:  106 GFIRCPSCAMIFGKQVGDVLQPEQDPVK----------AINGSDMSS-VALRLRAEHRYKC-NCGCEWCDLCDTVPYHNGFDCSQFKTYSTSKVCRFCS-VRLTDANKEKRKTRSSNH----FLDDVCNSTECGAKARRSCTKTLDCRHSCTGVVGEDVCPPCLRCPDAQNQIMAD-DFCNICWVDTLASSPSIRLGCGHSFHESCTIAKIGKRWTGSRISFGYLTCPLCQQE---IEHPSLGHL--IRQENELKEKITDLAIIRLELDDI 353

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BLAST of mRNA_H-paniculata_contig5967.13616.1 vs. uniprot
Match: A0A7S1EKJ8_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EKJ8_HEMAN)

HSP 1 Score: 136 bits (342), Expect = 4.550e-33
Identity = 93/278 (33.45%), Postives = 134/278 (48.20%), Query Frame = 1

Query:    1 LDLFMESLP--PGFVRCP--GCPMVYELVPNEDAARGGGGGVSAQELPKGSNLSRRAAMRHSGRHRFRCPQCSASFCDSCRCLPYHIGFSCEGWVSYQAKPKCVYCGGVAQEPENTEGGTSGSAGEQGGGLAAPCCGSEACNERANESCR-KKLPCGHACRGP-GSGDCLPCIESGCASATIDGDVEWCNVCWTESLLAAPCVQLDCGHFVHAACGREQLQKGRPTARLTFGFMSCPVCRADKALAKHPVLGKTEGIVEQLVLATEVENLAIQRLRAD 816
            L L +++L   P  V+CP  GC    E   +E    GG      +  P G  L+ RAA RH   +R RCP+CS +FC  C  +PYH  F+CE          C +C   A  P + + G +              CG+  C       C  +   C H C G  G   C PC+E  C+    D D E+CN+CWT+++ A PC+ L CGH  H  C R++L+K  PTA+++F F  CP+CR       HP L      +++L     V++ A+QRL+ +
Sbjct:  109 LKLTLQALDQDPNVVQCPAPGCSCRIEKRNDEQHKSGGKQRSVLRVAPDGQELTLRAA-RHMQTYRLRCPECSTNFCAGCLAVPYHTSFTCEQNKERSEARPCRFCS--APLPPSAKDGAT--------------CGAADCKTALEGVCDVRHKSCKHWCTGVFGEAKCGPCLE--CSG---DAD-EFCNICWTDAIRAQPCITLGCGHTFHLLCVRQRLEKRWPTAKISFSFAECPLCRV---WVDHPQLKAPLNEIKKLQKL--VQDSAVQRLKLE 358

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BLAST of mRNA_H-paniculata_contig5967.13616.1 vs. uniprot
Match: A0A6A7G183_9CRUS (E3 ubiquitin-protein ligase MYCBP2 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G183_9CRUS)

HSP 1 Score: 135 bits (340), Expect = 3.160e-32
Identity = 80/227 (35.24%), Postives = 118/227 (51.98%), Query Frame = 1

Query:   40 RCPG--CPMVYELVPNEDAARGGGGGVSAQELPKGSNLSRRAAMRHSGRHRFRCPQCSASFCDSCRCLPYHIGFSCEGWVSYQAKPKCVYCGGVAQEPENTEGGTSGSAGEQGGGLAAPCCGSEACNERANESCRKKLPCGHACRGPGS-GDCLPCIESGCASATIDGDV---EWCNVCWTESLLAAPCVQLDCGHFVHAACGREQLQKGRPTARLTFGFMSCPVCR 702
            RCP   C + +  V ++   +     VS ++   G  LS  A  +   ++R RC  CS +FC+ CR +PYH GF+CE + SY+    C +C  V  +P N    +   A        +  C  + C  R ++SC + L CGH C G  S  +  PC+   C S   D      ++CN+CW E L +AP ++L CGHF H AC   +L+K  P  RLTFGF++CP+C+
Sbjct:  307 RCPNEKCKVAFHFVSSDYRTQ-----VSIEKDDAGKPLSIEA-FKDFCKNRARCSGCSTAFCNQCRKIPYHKGFTCETFASYEKAAHCRFCA-VQLDPTNRAPPSEYPA-------LSDVCQEKDCQTRRDQSCTEFLACGHPCLGVRSESEHPPCLHGDCESKMNDCGTTGSDFCNICWVEDLKSAPIIRLGCGHFFHRACVLLKLEKRWPGVRLTFGFITCPLCK 519

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig5967.13616.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig5967.13616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JCA5_9PHAE	6.560e-131	67.35	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
D8LMH4_ECTSI	5.680e-123	66.67	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
X6MCA5_RETFI	3.120e-42	36.33	RING-type domain-containing protein n=1 Tax=Reticu...	[more]
A0A2P6NQE7_9EUKA	1.970e-41	34.85	Uncharacterized protein n=1 Tax=Planoprotostelium ...	[more]
A0A7S1KSY5_9EUKA	4.920e-38	33.71	Hypothetical protein n=1 Tax=Percolomonas cosmopol...	[more]
X6NC07_RETFI	2.590e-36	32.73	RING-type domain-containing protein n=1 Tax=Reticu...	[more]
A0A7S0V5J2_9CRYP	1.760e-34	34.96	Hypothetical protein (Fragment) n=1 Tax=Hemiselmis...	[more]
A0A0H5QUE2_9EUKA	4.320e-34	31.37	Uncharacterized protein (Fragment) n=1 Tax=Spongos...	[more]
A0A7S1EKJ8_HEMAN	4.550e-33	33.45	Hypothetical protein n=2 Tax=Hemiselmis andersenii...	[more]
A0A6A7G183_9CRUS	3.160e-32	35.24	E3 ubiquitin-protein ligase MYCBP2 (Fragment) n=1 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig5967	contig	H-paniculata_contig5967:392..6743 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	362.1
Seed ortholog evalue	2.3e-97
Seed eggNOG ortholog	2880.D8LMH4
KEGG ko	ko:K10693
Hectar predicted targeting category	other localisation
EggNOG free text desc.	regulation of axon guidance
EggNOG OGs	KOG1428@1,KOG1428@2759
Ec32 ortholog description	Zinc finger, RING-type
Ec32 ortholog	Ec-05_002770.1
EC	2.3.2.27
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko04121
Exons	8
Model size	834
Cds size	822
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930658.1348913-UTR-H-paniculata_contig5967:6731..6743	1622930658.1348913-UTR-H-paniculata_contig5967:6731..6743	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig5967 6732..6743 -
1691481392.9214342-UTR-H-paniculata_contig5967:6731..6743	1691481392.9214342-UTR-H-paniculata_contig5967:6731..6743	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig5967 6732..6743 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig5967.13616.1	prot_H-paniculata_contig5967.13616.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig5967 392..6731 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig5967:392..6743-
coding sequence from alignment at H-paniculata_contig5967:392..6743-

protein sequence of mRNA_H-paniculata_contig5967.13616.1

>prot_H-paniculata_contig5967.13616.1 ID=prot_H-paniculata_contig5967.13616.1|Name=mRNA_H-paniculata_contig5967.13616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=274bp
MESLPPGFVRCPGCPMVYELVPNEDAARGGGGGVSAQELPKGSNLSRRAA
MRHSGRHRFRCPQCSASFCDSCRCLPYHIGFSCEGWVSYQAKPKCVYCGG
VAQEPENTEGGTSGSAGEQGGGLAAPCCGSEACNERANESCRKKLPCGHA
CRGPGSGDCLPCIESGCASATIDGDVEWCNVCWTESLLAAPCVQLDCGHF
VHAACGREQLQKGRPTARLTFGFMSCPVCRADKALAKHPVLGKTEGIVEQ
LVLATEVENLAIQRLRADELPPLQ

mRNA from alignment at H-paniculata_contig5967:392..6743-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig5967.13616.1 ID=mRNA_H-paniculata_contig5967.13616.1|Name=mRNA_H-paniculata_contig5967.13616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6352bp|location=Sequence derived from alignment at H-paniculata_contig5967:392..6743- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGACTTGTTTATGGAGTCATTACCGCCGGGGTTTGTGCGGTGTCCTGG
GTGCCCGATGGTAAGCTGTGGATTGGTATGTGCCCATGTTTTTTGTTTTT
TTGTTTTCCGAGGCGATGACTACGTAGACGTGTTAAGGTGATGTTCTCTA
CCGACAATTTGAGTGACGGCACCGTCCGAAATGTTTCGCAACTACAAATA
TTTTCGTTGCGCCCGACACTGTGCCTAGGTCTACGAGCTGGTGCCCAACG
AAGATGCCGCACGCGGGGGTGGAGGAGGCGTGTCTGCCCAGGAATTGCCC
AAGGGGTCTAATCTCTCTCGTCGAGCAGCGATGAGGTGAGAGCCGTGGTG
TTGGTTGTTCAAGTGCCGAACCCAAGATGTGGTGTGTAGGCGTGGGGCGG
GGTGGGCTGAAGCTGAAGTGATGCGATGATAATAATTCCTGTGTTTCATT
TGGGTTTTTTTCAAGAGGTTGAAGGGATAGTACAGTACGCTCTGCCAGGC
AGTGGGCTGAGACTAGCTAGTGTCCGTGGGGCTGAATGGTGTTGAGTTTC
GCTTGTCAGGCAAAAGCGGCTATCGAGACCTATTCGGTCGTCTTTGGCCG
AATCAAATGAATATTTTGCCGCAAGATTGGGATGCTGCGGCCTCGAGAGG
TTACGCCGCACTATAATGGTATACACGTGACTTGTTGCTTAGGTGGGTGG
TTGAATTCAGTGCTGTGCGTTCCAGCGCTAGTCTAATCCCTACCAGACTA
ACGGAGGTTTTAGAATCAAGTCAATTACATAAGGCAATCATAAAGAGGAG
TACTAGTAGTAATGCAAAGAAAAATACACACGCAACAAGTGCCAAGTGCT
GTTGTTATGTTTACGACATCAAAACTAAAGCTCCGCCCGTCTTCACAAGC
AATCAAATTAGCCCATTTTCTCCATCCGCCCCAGAAAAGCCCGCAAGATG
TAATTAATTCCTTACTGTGACCCTATGTGCACTGTTGTACTTACTTCACT
GTTGTTGTGTGAACTCTACAATACACATATATACACAACGAGTGCTCGTC
TGTGGCACTGAGTAAGATTGGACTTGACGGGTGAAGCCACCGGATGCGTC
TCTACACCCGCGTGCAGGCTGAAGTTCGTAGCACCATGAAGAGGGGATGA
AGGAATACTTTAGAGAAAGTCTAGGTTAAAAGTAGAAATCTGGTATACTG
AAAGCCGATTCGCATCTCTCCCTTACACACTGCAATGCAAATAGGCACAG
TGGCCGCCATCGATTCCGGTGTCCACAGTGCAGCGCTTCGTTCTGCGACT
CCTGCCGATGCCTCCCGTACCACATCGGCTTCAGCTGTGAAGGCTGGGTC
TCGTACCAGGCGAAGCCTAAGTGCGTGTATTGTGGTGGCGTTGCCCAAGA
GCCCGAAAACACAGGTGCGCCATGATGTCCTGCTGTTGTGCTTGCTTACC
CACTTTATTGTCGCGCTTGTTTTATGTTCATGAGTATGAATAATCGCACG
AACTATAGCCTAGGAAGTGTAGTTGACATTGTACGCTAGTTAGATCATCG
ACATCGACCTATCACGGTATATATCGCTTTTCAGGCTAATCGTTGTCAAG
CATATCCCCCTTGATTGGACTCAGTGTATGAATACTAACTAGGTAGTCTA
ATTCAATAGCTCGAAGCTGCTAGGCATACCTCCGTTTTGTTTTACGGTTT
TTGTCATGTTTTTACCGGTCAGACAATCAGTTGGGGATGTCTACTCGTGC
TTTTGACACAATCTTGACGGCATTACTTCTTCCAAACTGTATTCTCATAG
TGTCGATGCCATCCTGCTGATGAAACAGTCCTTGGCGATTAACCCCATGT
TGTAGTTGGTATGTACTACCGTGAGACATCGTTAGGAGATGCTCGATTTC
ACTTGATCCGCCGAATTGGCATTTACGAAAAGTGCCCAATTTTGGACCCC
AATTGGGTGTGTTTGGTCCATAACTGTTTATAGAAACATTTGTATGCGCA
AAACGAAGTATTTCCGTAGAGCCTGAGAACTTATGCTTCCAACGAATCAA
GAACAATTCAAATTTAACGTGTTTTGAAAAAGTTACAACGGCAAATGCTG
TCGCTTTACCCCGAAAAACGGAAATCTCATTCCAGCGGAAGAGATTTTGA
CACGGGTGCGCGTAGCTGAGATATTTGCTGGGGGGGGCTTCGTTGGCACA
AGGCGCGAAGAAAAACAGAGGATTGTTGGAGACTCGTCCTGTTGCCTATT
TGAGGCCGTTCTTGTGCTGGAAACGCACATCGAAACATTTTTTTCGCTGT
TTTTGTCCATATTCTACTATATTCGTTTTTTCGAAAGTATTTCCGTCGAT
AAGAACTTCTTTTTCTGTATCATGTTTCTACTGTTAATGCCTAAAAAATG
ACGAGGGGGATTTTCATTTTTCTTTTCTGAAGTCAAGATATTGACAAATA
AGCTAATTTTTTTAGGTCTTCAAGCCGATTTTACGACAAAGCTCATTTCC
CACAGGAAAACACGTTTTTTTGGCCAAACTTCTCGAGTTTCAAATTTTTT
TTCCCCAAAATTCTTCCGTGTAAATCTTTGAGTTTTGCACTGACGGTGCT
GATGCGAAAGTCCGCATTACAAGATTCGTCGTGCTTCTCAAGATTCGGCC
AGCGTTCAATATTACTGTCTTACACTAGAGTTTTTACGCTCGAACATGTA
ACGCAGACCAAGATCAATACAAATAATATATTTATCTGCACGTAGTAGTA
GCGGTGGTGGGAGCACGGTGTGAGCGACAGGGGAGCAAGCACGTTCATGT
GTAGCACTCCTGACTAAGTGGTTCTCACCTGTTAATATGTATCAGGGGAG
CAGAAAAGGGATGCCTAAGGCGTTAATTTGTTTGTTGAATATAATTAAAC
GATTTTGACCTGGGGCATCAATTATACTCCTCGAACTATTGTTCCGTGGT
AACACAATTTTGTGCTCATGTTTCCCGATCAATGTAGTTATATATATATA
TATATATATATATATATATATATTTATTTTTTTAATCTCGCGGCTGCGTA
ATATTCTTGTTTACGATAATAAAATGTGTGACCCCGTTGTACAGGTAAAT
TTTAGTTAGCTCTTGGAAGTATCAGTATTCGGTCAGTAGTTCACACTCGT
ATCGACAAAAAAGTGCCGTAGGGCAGTCTCTGGAGATATTTTGTGCACAG
AGTCCGTAGGTACGCTTTTTATATATTTCCGGGGTTTCAGATCATGTGTG
CACAGCCAAATCCCACATGAGGGGGTGTTCGCCATAACTTGGGCTGTCGT
TCGTATCGTCTTCGGGCAAATCCCCCCAAAAAATTCAGTCGTCGCTGCTG
ATGTAAGTAATGGATGGGTTCGAGCGTCGTTTAGACGCTGGGTCATCTTT
GATTGTTGCCTGATTTCATGGCGATCGTCTAGTTTCTGTCCCAATTTTCA
ATGATAAGGCTGGGATCCAAATAAGGACGGACACGAGCTGCAAGATATTC
ACTCGGTGCTATGTAGGGACAAGAATTTCCTGATAAAGACCTGGTGGGTG
AAAATAATTTCGAGGTACAGAAACAGTTGCGTTAGTTCATAAAAACACAA
GATTCTCGGTAATGGCCTGCATAGTCATTAGTCATCAATAAACCGTAGCT
TCAAAACCAAGCAACATAGTGGATACGGAGATTTATTTACATGTGTTGCC
TACAAAGACCGCTGACACGGACAGATATGAGCGAGGAGAGAGCTACATGT
CTGTCGTACTCGCCGAAGGTCGTCGTCCATGGTGCTCGGGTATAATTGGA
AGAGATATCTGTTGTCACGGCCGCGAGCGCAGAATTTCACCCCCGCCGCG
CGCTCTTCCCTATATGATCTAGTTTGGCTCATGGAAATACACAACTGAGA
TTTGAGGTTAGCTGTATAATGTCAACGTGTGGTGCGATGGAGTCATTTGA
AGAGCGGTATAGATATACCAATTGTGACTTCTGGGTTGACTTTTGCATAA
GGCTTGTGGTGGGTCTCGGGGTAGTTTATTTCTGTCATGCGTTCACGTGA
AAGTCCCCATACCCCGTACTCGGTACCGTACTGTATGTATCGTTTTTCGA
GAAGGTGGAACGAGTGGTTCAGCTGGGGAGCAGGGCGGAGGTCTCGCCGC
GCCGTGCTGTGGCAGCGAGGCCTGCAACGAACGGGCGAACGAGAGCTGTC
GTAAGAAACTGCCTTGCGGACACGCTTGCCGTGGACCTGGTGAGAACGGA
CGAGGTAGCAGTTGCCCTACATTACAAAGTATCACAAATGTGGCTCACAG
GTGTCTACATTTTGGTTCTGGTGGTAAGACAAGGCTCCAATACGGATATG
CTTAGTGCGTGCCATGCGTCGGGCTCTCTGGAGTACGACGACATGGAGAG
CGCAAAAGCGTCGGGAAAGGAGAAGGGGTAGTACACACATTGGTTTTTTG
CCACTGCCTCAGAGAACGGCGGAAAAATATTAATCGGCGCTTGGGTTCGG
TACATCCTCACGATAGCAATAAACATACAAGGTAAATTACAGGAAGTGTC
AACAATCCATGGCAAATGCGGGCTTGACTACCTCGAATATCTCGCACTGC
TGCATGTGCACATCTTTAGTGCTTGGTACCACAGGTCAAGATACCACCTT
ATCTAAAACTCTCCATGATTGGATGAAACGTGAATATACTGAACGGTGTA
GCGCACCTCGTCATCGAATGTTGAACTATGCTACCCGGCTATGTTCTCAG
GTTCGGGAGATTGCCTCCCATGCATTGAGTCTGGTTGTGCATCTGCGACG
ATTGACGGGGACGTCGAGTGGTGCAACGTGTGCTGGACGGAGTCGCTGCT
AGCTGCGCCGTGTGTGCAGGTAAGCTTGATGTATGGTATACGCTCTCTTT
GCTCTATGCGGTGCTCTATTGTTGATCTTCGCGTCCCGTCCTTTAAACGT
TCGTTTCGCTCAGAAATTCATATTATAGCATATGAACACCCTGGCAATCG
ACGTCAACGTTTTGCAAACGTGAATTTTCCTCTTCGTGGCATTCAAAGAG
TGGGCACAGCGGTCGCTTGTGCCCTGTCAATCCGGGCACAGTGTTGTGTA
GCACAGATGCTTCAAATGGAAGCATTACTACGGGACGGACTCACTCATAC
CGATGGATGGTGTATTGGGGTAGCGCAGCACCTATTGTCTCACTTGAAGC
ACTCGGTAAATATGCTCTCTAGCCACTCCGCACTGGCGTTTATTTTCTCC
TCCCCTGTTGTCTTCAGCTGGATTGTGGACACTTCGTACACGCCGCGTGT
GGCCGCGAACAACTCCAAAAAGGAAGGCCAACGGCAAGGTTGACGTTTGG
ATTTATGAGCTGCCCTGTGTGCCGCGCAGACAAGGTGCGGAATGGGCGAC
ATGAAGACGTTTTGCGCTGAGGTCATGATGAACGAACGGATTTGCCGAGC
TTTCAGGCTTGAGCAATACCACCCCAAGCATTATCGTGAAAGTTGTTGCG
CAGTGCTCGCGTAGTTTTTCCGTTTTTCTTCATGTTAGTATTGGTTGGTA
TTCAGTTCAAACTCCACGTTTGTTTTGCCATGTCGAAAGGCGTACTTGCC
GCGGAAATTTAGAGTTGAGGTTCGACCTGAAGTCGGACAGCCAAGTTGAT
CATGGGTCATGACATATTGAACCATTTATTGATAAAATGGGTCTCGCTGG
CGCTCACCACATGACGATTTACCTCAACGTTTTGTCTGGTCCAACAATCC
AGGCATTAGCTAAACACCCAGTTCTTGGGAAGACGGAGGGCATCGTGGAG
CAGCTTGTCCTGGCAACGGAAGTGGAGGTAGGGAGTCGGTATCACGAGCA
CCCTATTTTCGAGAAAGTCAAGTTTGAAGAAGCATCGCTATCGGGGCGTT
CTGACAGCGCCTTAGGTAGTACTACCTTGCTTCTGTCGCCGCCCCTCCAA
TCTAAGGTCTCGAAGCAGAGTTAATTTGAGATAGATTACCATGGTAGAAA
CAAACACCGAAGTATTTTGATACGAGTTGACATAACCGAGCACGCAGTTG
GCCGCTAGGCAACCTCTGTATACCACGTGCATATGGCGTGAAATCTTGCT
GGGGGTTTCCCTGCAGGGTATCATCAACGGCAACGCCCTGAACTCGATTT
CTCTGTGCGAGCTGAACTACTTGAGGGTTATTTTGTGATGTCTCCGTCCT
CTCGAACGAATTGTGTTTTGTGGTTAATTGTGCGGCTCAACTCTGAATCT
TCCACACGTTCGTTTCTTGCTATTCGTTTTTCTCTTCTTGATCTTACGCT
GCAGAATCTGGCAATACAACGCCTGCGTGCAGACGAACTGCCTCCTCTAC
AG

Coding sequence (CDS) from alignment at H-paniculata_contig5967:392..6743-

>mRNA_H-paniculata_contig5967.13616.1 ID=mRNA_H-paniculata_contig5967.13616.1|Name=mRNA_H-paniculata_contig5967.13616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at H-paniculata_contig5967:392..6743- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTCATTACCGCCGGGGTTTGTGCGGTGTCCTGGGTGCCCGATGAT
GGAGTCATTACCGCCGGGGTTTGTGCGGTGTCCTGGGTGCCCGATGGTCT
ACGAGCTGGTGCCCAACGAAGATGCCGCACGCGGGGGTGGAGGAGGCGTG
TCTGCCCAGGAATTGCCCAAGGGGTCTAATCTCTCTCGTCGAGCAGCGAT
GAGGTCTACGAGCTGGTGCCCAACGAAGATGCCGCACGCGGGGGTGGAGG
AGGCGTGTCTGCCCAGGAATTGCCCAAGGGGTCTAATCTCTCTCGTCGAG
CAGCGATGAGGCACAGTGGCCGCCATCGATTCCGGTGTCCACAGTGCAGC
GCTTCGTTCTGCGACTCCTGCCGATGCCTCCCGTACCACATCGGCTTCAG
CTGTGAAGGCTGGGTCTCGTACCAGGCGAAGCCTAAGTGCGTGTATTGTG
GTGGCGTTGCCCAAGAGCCCGAAAACACAGGCACAGTGGCCGCCATCGAT
TCCGGTGTCCACAGTGCAGCGCTTCGTTCTGCGACTCCTGCCGATGCCTC
CCGTACCACATCGGCTTCAGCTGTGAAGGCTGGGTCTCGTACCAGGCGAA
GCCTAAGTGCGTGTATTGTGGTGGCGTTGCCCAAGAGCCCGAAAACACAG
AAGGTGGAACGAGTGGTTCAGCTGGGGAGCAGGGCGGAGGTCTCGCCGCG
CCGTGCTGTGGCAGCGAGGCCTGCAACGAACGGGCGAACGAGAGCTGTCG
TAAGAAACTGCCTTGCGGACACGCTTGCCGTGGACCTGAAGGTGGAACGA
GTGGTTCAGCTGGGGAGCAGGGCGGAGGTCTCGCCGCGCCGTGCTGTGGC
AGCGAGGCCTGCAACGAACGGGCGAACGAGAGCTGTCGTAAGAAACTGCC
TTGCGGACACGCTTGCCGTGGACCTGGTTCGGGAGATTGCCTCCCATGCA
TTGAGTCTGGTTGTGCATCTGCGACGATTGACGGGGACGTCGAGTGGTGC
AACGTGTGCTGGACGGAGTCGCTGCTAGCTGCGCCGTGTGTGCAGGTTCG
GGAGATTGCCTCCCATGCATTGAGTCTGGTTGTGCATCTGCGACGATTGA
CGGGGACGTCGAGTGGTGCAACGTGTGCTGGACGGAGTCGCTGCTAGCTG
CGCCGTGTGTGCAGCTGGATTGTGGACACTTCGTACACGCCGCGTGTGGC
CGCGAACAACTCCAAAAAGGAAGGCCAACGGCAAGGTTGACGTTTGGATT
TATGAGCTGCCCTGTGTGCCGCGCAGACAAGCTGGATTGTGGACACTTCG
TACACGCCGCGTGTGGCCGCGAACAACTCCAAAAAGGAAGGCCAACGGCA
AGGTTGACGTTTGGATTTATGAGCTGCCCTGTGTGCCGCGCAGACAAGGC
ATTAGCTAAACACCCAGTTCTTGGGAAGACGGAGGGCATCGTGGAGCAGC
TTGTCCTGGCAACGGAAGTGGAGGCATTAGCTAAACACCCAGTTCTTGGG
AAGACGGAGGGCATCGTGGAGCAGCTTGTCCTGGCAACGGAAGTGGAGAA
TCTGGCAATACAACGCCTGCGTGCAGACGAACTGCCTCCTCTACAGAATC
TGGCAATACAACGCCTGCGTGCAGACGAACTGCCTCCTCTACAG