mRNA_H-paniculata_contig5966.13615.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5966.13615.1
Unique NamemRNA_H-paniculata_contig5966.13615.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5966.13615.1 vs. uniprot
Match: D7FMH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH3_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 6.920e-14
Identity = 66/159 (41.51%), Postives = 75/159 (47.17%), Query Frame = 1 
Query:  100 FDDYDEEEVAELEEYLKAHPSKAEDREALRQRAKELSASINMSKKPAPESSAIDISGVERITDASALRRGDMAGG----------ARASSSTMPGEAKREYTDASGKLKFNKRMPVDASGGTATQAAGSETGKREKKKARLGKLAKANTKLLSFGDDED 546
            F+DYDEEEVA LE Y+K HPSK ED+EALR+RA+ELSASI   +                    S  + G  AGG                    E   EYTDASGKLKFNKR PV A+ G                         +N KLLSFGDDED
Sbjct:   39 FEDYDEEEVAALEAYMKTHPSKEEDKEALRKRARELSASIGSGQ-------------------GSEAKGGRTAGGNXXXXXXXXXXXXXXXXXXXEEPIEYTDASGKLKFNKR-PVSAAAGGXXXXXXXXXXXXXXXXXXXXXXXXSNAKLLSFGDDED 177
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BLAST of mRNA_H-paniculata_contig5966.13615.1 vs. uniprot
Match: A0A6H5KEF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF2_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.420e-6
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:  100 FDDYDEEEVAELEEYLKAHPSKAEDREALRQRAKELSASI 219
            F+DYDEEEVA LE Y+K HPSK ED+EALR+RA+ELS SI
Sbjct:  103 FEDYDEEEVAALEAYMKTHPSKEEDKEALRKRARELSVSI 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5966.13615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMH3_ECTSI6.920e-1441.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEF2_9PHAE1.420e-675.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5966contigH-paniculata_contig5966:4710..7321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1259
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5966.13615.1prot_H-paniculata_contig5966.13615.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5966 5417..7300 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.8950915-UTR-H-paniculata_contig5966:4709..54161622930657.8950915-UTR-H-paniculata_contig5966:4709..5416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5966 4710..5416 -
1691481392.7658105-UTR-H-paniculata_contig5966:4709..54161691481392.7658105-UTR-H-paniculata_contig5966:4709..5416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5966 4710..5416 -
1622930657.9642413-UTR-H-paniculata_contig5966:7300..73211622930657.9642413-UTR-H-paniculata_contig5966:7300..7321Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5966 7301..7321 -
1691481392.8112826-UTR-H-paniculata_contig5966:7300..73211691481392.8112826-UTR-H-paniculata_contig5966:7300..7321Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5966 7301..7321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.9125457-CDS-H-paniculata_contig5966:5416..57341622930657.9125457-CDS-H-paniculata_contig5966:5416..5734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5966 5417..5734 -
1691481392.7751908-CDS-H-paniculata_contig5966:5416..57341691481392.7751908-CDS-H-paniculata_contig5966:5416..5734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5966 5417..5734 -
1622930657.9299126-CDS-H-paniculata_contig5966:6301..64121622930657.9299126-CDS-H-paniculata_contig5966:6301..6412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5966 6302..6412 -
1691481392.7842517-CDS-H-paniculata_contig5966:6301..64121691481392.7842517-CDS-H-paniculata_contig5966:6301..6412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5966 6302..6412 -
1622930657.9442391-CDS-H-paniculata_contig5966:7198..73001622930657.9442391-CDS-H-paniculata_contig5966:7198..7300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5966 7199..7300 -
1691481392.7983205-CDS-H-paniculata_contig5966:7198..73001691481392.7983205-CDS-H-paniculata_contig5966:7198..7300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5966 7199..7300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5966.13615.1

>prot_H-paniculata_contig5966.13615.1 ID=prot_H-paniculata_contig5966.13615.1|Name=mRNA_H-paniculata_contig5966.13615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MSGKIPRGSMTEAMGAGSSGGSGGGAFDDYDEEEVAELEEYLKAHPSKAE
DREALRQRAKELSASINMSKKPAPESSAIDISGVERITDASALRRGDMAG
GARASSSTMPGEAKREYTDASGKLKFNKRMPVDASGGTATQAAGSETGKR
EKKKARLGKLAKANTKLLSFGDDEDE*
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mRNA from alignment at H-paniculata_contig5966:4710..7321-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5966.13615.1 ID=mRNA_H-paniculata_contig5966.13615.1|Name=mRNA_H-paniculata_contig5966.13615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2612bp|location=Sequence derived from alignment at H-paniculata_contig5966:4710..7321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGGGCAAGCTCAAGCGGCATGTCGGGAAAAATTCCGAGAGGATCAAT
GACCGAGGCTATGGGTGCGGGGAGTAGTGGTGGTAGCGGCGGCGGCGCAT
TTGATGACTATGACGAGGAGGAGGTCAGTGCAAGCTTATGAATTTTAGTC
TTCGTAATTTATTATTGCTCTTTCGCCATTTGCTGTGTTCATCATCGTTC
TTATTGGCTGCTACCAGTTGGAACATCAAGAGTGCACCTGACACAAACGG
GTTCGTTTAAAATGCCGATATTTGTGATAAATTCCTCCTAGAGTAGACTC
CTTGATTCCGACAGATGCAGGTCGTATACAAAGAGCTCGGTTGGCTCTTG
ACAAGGATCAGTACGCGCGGCGTCCGTCAATGACAGCCTTTGCATCCACC
CCATGCGTTGCTGTTTGATGTAAATAATTTCGTCTTTCACGACAATCGAT
TGCCGTGTAATCTGAACTGTGTACATCGTGCTCTTCGGGTTCGCACGTTG
CACGTTCCTCTCTAGCTAGCTAACATATTCCCTTCTTTGAACACCTCCCA
GATGCAAGTTGTTCACCCCCCGGACAAGTACGAATACTTGAAAATGGTTT
ACAAAAACAAATTAAAGTATTCGCCTGATTTTCAGAATGAGCGAACACAT
AGAATAAAGTACTCACCCCTGTCCATTCGATTTACGAGCATTATTAGCAC
TCGTGGGTGGTTCGGGGCACGTAGAATACACGAGCTCATTCTGAAACTCA
GGCGATTACTTTGAGTTTTTTGTGAAAACCGCTGCAAGTGTTCGTATTAG
TCCGGTGAGTGAAGTTTTTTCACGTGTTCATGATTCGTGTATGGCGATTA
TTTCTTCCCACGACAAACGAAGGCAACGGTACTCTTGCCATGTGATCTGC
TTGCATCAGGTGGCCGAACTAGAGGAGTATCTGAAGGCCCATCCCAGCAA
AGCCGAGGACAGAGAAGCATTACGACAACGCGCAAAAGAATTATCCGCTA
GCATTAACATGAGTAAGAAGGTGAGCCTTGTTCATGTAGTGACCCGACGA
CATGTGTGTGCGACGCATGCGTCTGTTTCCCATGCGCTAGGAATATGGGG
TACACGCGGTTCAGTTGTGGGCATCAGTTCCTTTTTCAGCCACTTTAGTC
GGCTCCTTGCATTGATTCTGTATTGATGTCGCTATGTTCGCCTTTGGGGT
GGGCATCAATGGATTCGGAATTGGTTCTGGTAGTCAGGTGTGTCTGTGTG
TGTGTCTCTGTGTGTGTCTCTCTGTGTGTGTGTCTCTGTGTGTGTTTACT
CTCCCCAATGTAAACCTCACGTGCACAGTAGCAGGGATGGTTATCTACGG
CTACGCTAGCGGCGTACCCAACTTCAACCCTCCAATGACCACCATGACCA
CCATCATCATCATCATCGCCATTATCATCGTCATTATCATCATCATACGT
AATTGCTACGTCGACTAGCCTTCTCGTCCTCTATATACCTCGTATCCATC
CACGCCCTGTCACGTGACTTCGGCATATATCCGCCCTCTCGCCCTTGCGA
TTGTGCTTGAATGAATACCGAATCTCTATGTGTTTAGCCTGCTCCAGAAA
GCTCAGCAATAGATATCAGTGGAGTCGAACGAATAACCGATGCATCAGCA
TTACGAAGAGGGGATATGGCGGGGGGCGCACGAGCATCCTCTTCTACGAT
GCCAGGAGAAGCCAAGCGAGAATACACAGATGCGTCTGGCAAGTTAAAAT
TCAACAAGCGCATGCCAGTCGACGCGAGCGGGGGGACAGCAACGCAAGCA
GCGGGTAGTGAAACGGGGAAGAGAGAGAAAAAGAAGGCCAGACTCGGGAA
ATTAGCAAAGGCCAACACCAAGTTGCTGTCGTTTGGAGACGACGAGGACG
AATGAGTGGGCGTATTTTTGTGGACATCCTGTAAATAGTACATGCATTGC
ATATGTAAAAATGGGGTCGATGGAACTCGGTGCTCGATGCACCTCAAGAA
CGAGCACACCGAAAAAAAAATACCCCTTAAAACGGTTACAAAAATCAGAC
CAAATACTCTTGGGTTTACTTGTAGAACCCCAAAATTCCCAAATACCTAT
TTTTAGCAGAAATTTGCAATATTTTATTCAGCTGTAATGAGACAAAATTG
GACTTTTAAAAAATGGATAAAATCGAACTTTGCGAAAATGGCGGTACATA
GCAGGGGGGTGCGGCTATGTTTGCGTTATTTTTAGAAATAGAAAAAACAC
GGGTGGCGTACAATGCACACCACAATTGGAGACAAAAAATGCGCGGTCAG
AAGGTCGGGCTTATTTTATTTTTTAGGTCCTTGAGAAATTCGCATGAGGA
CCGCTGCTCGAATTGTGCCCCCACGGCAACTCCTGTACCACGAGTGTAAG
AAGGTTCTACTTCGGGGGAGACTGTACATAGACCGTGATATCACGCCAAA
TGACGAGCTTTTCTTAGGTGTTGCTGGGTTCTACACCTTACTGTTGTCGA
AGAAGTGCTTGCCCTCCGCTCGGCATCCTATTCGGTGAGTGCAGCTTTGT
ATGATGTTTTTTCATCAGACGGTGTTGAACATTGATGCCGCAGCTCGCGA
TGAACCCCTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig5966:4710..7321-

>mRNA_H-paniculata_contig5966.13615.1 ID=mRNA_H-paniculata_contig5966.13615.1|Name=mRNA_H-paniculata_contig5966.13615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig5966:4710..7321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGGAAAAATTCCGAGAGGATCAATGACCGAGGCTATGGGTGCGGG
GAGTAGTGGTGGTAGCGGCGGCGGCGCATTTGATGACTATGACGAGGAGG
AGATGTCGGGAAAAATTCCGAGAGGATCAATGACCGAGGCTATGGGTGCG
GGGAGTAGTGGTGGTAGCGGCGGCGGCGCATTTGATGACTATGACGAGGA
GGAGGTGGCCGAACTAGAGGAGTATCTGAAGGCCCATCCCAGCAAAGCCG
AGGACAGAGAAGCATTACGACAACGCGCAAAAGAATTATCCGCTAGCATT
AACATGAGTAAGAAGGTGGCCGAACTAGAGGAGTATCTGAAGGCCCATCC
CAGCAAAGCCGAGGACAGAGAAGCATTACGACAACGCGCAAAAGAATTAT
CCGCTAGCATTAACATGAGTAAGAAGCCTGCTCCAGAAAGCTCAGCAATA
GATATCAGTGGAGTCGAACGAATAACCGATGCATCAGCATTACGAAGAGG
GGATATGGCGGGGGGCGCACGAGCATCCTCTTCTACGATGCCAGGAGAAG
CCAAGCGAGAATACACAGATGCGTCTGGCAAGTTAAAATTCAACAAGCGC
ATGCCAGTCGACGCGAGCGGGGGGACAGCAACGCAAGCAGCGGGTAGTGA
AACGGGGAAGAGAGAGAAAAAGAAGGCCAGACTCGGGAAATTAGCAAAGG
CCAACACCAAGTTGCTGTCGTTTGGAGACGACGAGGACGAATGACCTGCT
CCAGAAAGCTCAGCAATAGATATCAGTGGAGTCGAACGAATAACCGATGC
ATCAGCATTACGAAGAGGGGATATGGCGGGGGGCGCACGAGCATCCTCTT
CTACGATGCCAGGAGAAGCCAAGCGAGAATACACAGATGCGTCTGGCAAG
TTAAAATTCAACAAGCGCATGCCAGTCGACGCGAGCGGGGGGACAGCAAC
GCAAGCAGCGGGTAGTGAAACGGGGAAGAGAGAGAAAAAGAAGGCCAGAC
TCGGGAAATTAGCAAAGGCCAACACCAAGTTGCTGTCGTTTGGAGACGAC
GAGGACGAATGA
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