mRNA_H-paniculata_contig5965.13614.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5965.13614.1
Unique NamemRNA_H-paniculata_contig5965.13614.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5965.13614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5965contigH-paniculata_contig5965:2628..3065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size438
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.8475492-CDS-H-paniculata_contig5965:2627..30561622930657.8475492-CDS-H-paniculata_contig5965:2627..3056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5965 2628..3056 +
1691481392.7466767-CDS-H-paniculata_contig5965:2627..30561691481392.7466767-CDS-H-paniculata_contig5965:2627..3056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5965 2628..3056 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.8624454-UTR-H-paniculata_contig5965:3056..30651622930657.8624454-UTR-H-paniculata_contig5965:3056..3065Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5965 3057..3065 +
1691481392.7563226-UTR-H-paniculata_contig5965:3056..30651691481392.7563226-UTR-H-paniculata_contig5965:3056..3065Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5965 3057..3065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5965.13614.1prot_H-paniculata_contig5965.13614.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5965 2628..3056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5965.13614.1

>prot_H-paniculata_contig5965.13614.1 ID=prot_H-paniculata_contig5965.13614.1|Name=mRNA_H-paniculata_contig5965.13614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
NEGGVVEAPDSVGVSFVALRYRVCWCCCGGRSIPTLVVVVLVAAVVVCHF
GNVSSSLFFFSFSCRCKLEVDGDLRPWKLPPPTSVEAPPSYVHVSQSGRS
YTACPQLEDPVLQVPSRPSLKHVLHGIYLNELRICPLLQHRG*
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mRNA from alignment at H-paniculata_contig5965:2628..3065+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5965.13614.1 ID=mRNA_H-paniculata_contig5965.13614.1|Name=mRNA_H-paniculata_contig5965.13614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at H-paniculata_contig5965:2628..3065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGAAGGAGGTGTCGTGGAGGCGCCCGATTCTGTTGGCGTGAGTTTTGT
AGCGCTTCGGTATCGAGTGTGTTGGTGCTGTTGCGGTGGAAGGAGTATAC
CGACACTGGTAGTAGTAGTATTGGTAGCGGCGGTTGTTGTTTGCCATTTC
GGAAATGTTAGTTCAAGCCTCTTCTTCTTTTCTTTTTCGTGTCGTTGTAA
GCTCGAGGTTGATGGTGACTTGCGTCCGTGGAAGCTCCCCCCTCCTACGT
CCGTGGAAGCTCCCCCCTCCTACGTCCATGTGTCTCAGTCCGGTCGTTCA
TATACTGCTTGCCCACAGCTCGAAGATCCCGTCCTCCAAGTACCCTCCCG
GCCGTCCCTGAAACACGTTCTCCATGGGATATATCTCAACGAGCTCCGTA
TTTGTCCACTCTTGCAGCACAGGGGATGATAGTATCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig5965:2628..3065+

>mRNA_H-paniculata_contig5965.13614.1 ID=mRNA_H-paniculata_contig5965.13614.1|Name=mRNA_H-paniculata_contig5965.13614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig5965:2628..3065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGAAGGAGGTGTCGTGGAGGCGCCCGATTCTGTTGGCGTGAGTTTTGT
AGCGCTTCGGTATCGAGTGTGTTGGTGCTGTTGCGGTGGAAGGAGTATAC
CGACACTGGTAGTAGTAGTATTGGTAGCGGCGGTTGTTGTTTGCCATTTC
GGAAATGTTAGTTCAAGCCTCTTCTTCTTTTCTTTTTCGTGTCGTTGTAA
GCTCGAGGTTGATGGTGACTTGCGTCCGTGGAAGCTCCCCCCTCCTACGT
CCGTGGAAGCTCCCCCCTCCTACGTCCATGTGTCTCAGTCCGGTCGTTCA
TATACTGCTTGCCCACAGCTCGAAGATCCCGTCCTCCAAGTACCCTCCCG
GCCGTCCCTGAAACACGTTCTCCATGGGATATATCTCAACGAGCTCCGTA
TTTGTCCACTCTTGCAGCACAGGGGATGAAACGAAGGAGGTGTCGTGGAG
GCGCCCGATTCTGTTGGCGTGAGTTTTGTAGCGCTTCGGTATCGAGTGTG
TTGGTGCTGTTGCGGTGGAAGGAGTATACCGACACTGGTAGTAGTAGTAT
TGGTAGCGGCGGTTGTTGTTTGCCATTTCGGAAATGTTAGTTCAAGCCTC
TTCTTCTTTTCTTTTTCGTGTCGTTGTAAGCTCGAGGTTGATGGTGACTT
GCGTCCGTGGAAGCTCCCCCCTCCTACGTCCGTGGAAGCTCCCCCCTCCT
ACGTCCATGTGTCTCAGTCCGGTCGTTCATATACTGCTTGCCCACAGCTC
GAAGATCCCGTCCTCCAAGTACCCTCCCGGCCGTCCCTGAAACACGTTCT
CCATGGGATATATCTCAACGAGCTCCGTATTTGTCCACTCTTGCAGCACA
GGGGATGA
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