mRNA_H-paniculata_contig5964.13612.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5964.13612.1
Unique NamemRNA_H-paniculata_contig5964.13612.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5964.13612.1 vs. uniprot
Match: A0A6H5JZ77_9PHAE (Glyco_hydro_114 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ77_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 6.130e-97
Identity = 152/248 (61.29%), Postives = 188/248 (75.81%), Query Frame = 2 
Query:  362 PELG-GKSWTPKVGDHYNYNLQLPVDIGAAVEVFFIDMDGQQQTIDDLHAINKAVVCYISIGTVESWRADSLEFPSGAVGGDVAGWAGENWLDVKDPTVREIMTARVKKAADMNCDAIEPDNMMAYQE-SSIGVEVSEADQIDYNTWFAGVVHEHGMKVGVKNSVDLAFVLEPYFDFALNEECFQWNECEVYQKSFIAAGKPVFNVEYRKTMDHCDLANSLGIDSIVKNLKLDSSMCSCSDPNRDINC 1099
            PE G G  +T      +NYNL+ PVD  A V+VFFIDMD  Q  ID+LH   K VVCYISIGTVE WR D+ EFPS A+GGDV+GWAGE W+DV D  VREIMTARV+ A+ MNCDA+EPDNMM Y E SS GV VSEA+QI+YN+WFA +VH +GM VG+KN+V+L  +L   FDFALNEEC +WNEC VY+ +F+A GKPV+NVEY      CD AN+LG+D+I+K+  LD++ CSC DP+RD++C
Sbjct:  135 PEPGSGGGFTFSRDSSWNYNLRTPVDTSADVDVFFIDMDAGQGVIDELHDKGKGVVCYISIGTVEDWRDDAKEFPSSAIGGDVSGWAGEKWVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVYTEGSSTGVSVSEAEQIEYNSWFADIVHAYGMGVGLKNAVELVPILVNKFDFALNEECHEWNECNVYEDTFLAEGKPVYNVEYNLGNSVCDEANALGLDTILKSYDLDAAFCSCVDPSRDVDC 382
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BLAST of mRNA_H-paniculata_contig5964.13612.1 vs. uniprot
Match: D7FRL2_ECTSI (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 2.030e-72
Identity = 126/244 (51.64%), Postives = 165/244 (67.62%), Query Frame = 2 
Query:  380 SWTPKVGDHYNYNLQLPVDIGAAVEVFFIDMDGQQQTIDDLHAINKAVVCYISIGTVESWRADSLEFPSGAVGGDVAGWAGENWLDVKDPTVREIMTARVKKAADMNCDAIEPDNMMAYQESSIGVEVSEADQIDYNTWFAGVVHEHGMKVGVKNSVDLAFVLEPYFDFALNEECFQWNECEVYQKSFIAAGKPVFNVEYRKTMDHCDLANSLGIDSIVKNLKLDSSMCSCSDPNRDINCGSII 1111
            SW P+VGD +NYNL  PVD      VFFIDMD  Q TIDDLHA  K V CYIS+GT E WR D   FP   +G  +  W  E++LD+   +VRE+M ARVKKAA  NCDA+EP+NM  + + + G  +S  DQ+ YN WFA +V E+GM+VG+K+S +L   L  Y+DFA+  EC +  EC VY   F+   KPVFNVEY K    CD +N+LGID+I KNL+LD+ +CSC+D +RD++C S++
Sbjct:  493 SWLPRVGDSWNYNLDTPVDXXXXXXVFFIDMDNAQDTIDDLHAKGKYVACYISVGTAEPWREDFELFPDSVIGQRMEEWEAESYLDITQESVREVMEARVKKAASTNCDAVEPNNMSNWNQENTGFTISRDDQVAYNIWFALLVRENGMRVGIKDSFELVGDLNSYYDFAI-AECHEEFECGVYTVPFLLKDKPVFNVEYSKDYGVCDESNALGIDTIFKNLELDAPLCSCADSSRDVDCDSVL 735
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BLAST of mRNA_H-paniculata_contig5964.13612.1 vs. uniprot
Match: A0A7V4LGC7_9DELT (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V4LGC7_9DELT)

HSP 1 Score: 193 bits (490), Expect = 6.900e-52
Identity = 101/234 (43.16%), Postives = 139/234 (59.40%), Query Frame = 2 
Query:  383 WTPKVGDHYNYNLQLPVDIGAAVEVFFIDM-DGQQQTIDDLHAINKAVVCYISIGTVESWRADSLEFPSGAVGGDVAGWAGENWLDVKDPTVREIMTARVKKAADMNCDAIEPDNMMAYQESSIGVEVSEADQIDYNTWFAGVVHEHGMKVGVKNSVDLAFVLEPYFDFALNEECFQWNECEVYQKSFIAAGKPVFNVEYRKTM---DHCDLANSLGIDSIVKNLKLDSSMCSC 1072
            W P  G  + + L  P+D    V+++ ID+ D  Q  ID L A   AV+CY S G+ E WR D+ +FP  AVG  + GW GE WLD++ P VR IM AR+ +A    CD +EPDN+ AY   S G  ++ A Q+DYN + A   H  G+ VG+KN ++    L   FD+AL+EECFQW+EC++  + F+AAGK VF VEY       D C  AN+L  D+++K L LD+    C
Sbjct:  100 WRPAPGTRWQWQLSGPIDDSLDVDMYDIDLFDAPQAVIDGLRARGVAVICYFSAGSREDWREDAGDFPPAAVGEPLDGWPGERWLDIRSPDVRRIMQARLDRAVARRCDGVEPDNVDAYANDS-GFPLTAAHQLDYNRFLAAEAHARGLSVGLKNDLEQVEDLLADFDWALDEECFQWDECDLL-RPFVAAGKAVFQVEYGDASLAADVCPRANALDFDTLIKRLDLDAWRIPC 331
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BLAST of mRNA_H-paniculata_contig5964.13612.1 vs. uniprot
Match: A0A836UAD2_9BACT (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Candidatus Handelsmanbacteria bacterium TaxID=2099671 RepID=A0A836UAD2_9BACT)

HSP 1 Score: 183 bits (465), Expect = 3.150e-49
Identity = 98/232 (42.24%), Postives = 137/232 (59.05%), Query Frame = 2 
Query:  383 WTPKVGDHYNYNLQLPVDIGAAVEVFFIDM-DGQQQTIDDLHAINKAVVCYISIGTVESWRADSLEFPSGAVGGDVAGWAGENWLDVKDPTVREIMTARVKKAADMNCDAIEPDNMMAYQESSIGVEVSEADQIDYNTWFAGVVHEHGMKVGVKNSVDLAFVLEPYFDFALNEECFQWNECEVYQKSFIAAGKPVFNVEYRKTM-----DHCDLANSLGIDSIVKNLKLDSS 1060
            W P+V   + + L   V+I   V V+ ID+ D  Q TID LH + + V+CY S G+ E WR D+ +FP   +G  + GW GE WLD++  +VR+IM  R+  A    CD +EPDNM  Y   S G +++ A Q+ YN W A   HE G+ V +KN VD    LEPYFD  +NE+C ++NEC++    FI AGKPVFN EYR++      D C+ A++  I  +V  L LD +
Sbjct:   27 WKPEVTTTWQWQLLGDVNIEYDVAVYDIDLFDVPQTTIDQLHTVGRKVMCYFSGGSFEEWRDDAGDFPKVVLGKGLDGWEGERWLDIRSASVRQIMATRLDLAVSRQCDGVEPDNMDGYTNDS-GFDMTGAHQLAYNRWLANAAHERGLFVALKNDVDQVRELEPYFDLQVNEQCHEFNECDLLAP-FIDAGKPVFNAEYRRSYVDNPSDLCNQADAEQIRVLVLPLDLDDA 256
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BLAST of mRNA_H-paniculata_contig5964.13612.1 vs. uniprot
Match: A0A366H1H2_9BURK (Glyco_hydro_114 domain-containing protein n=1 Tax=Eoetvoesia caeni TaxID=645616 RepID=A0A366H1H2_9BURK)

HSP 1 Score: 182 bits (463), Expect = 1.240e-48
Identity = 101/248 (40.73%), Postives = 142/248 (57.26%), Query Frame = 2 
Query:  368 LGGKSWTPKVGDHYNYNLQLPVDIGAAVEVFFIDM-DGQQQTIDDLHAINKAVVCYISIGTVESWRADSLEFPSGAVGGDVAGWAGENWLDVKDPTVREIMTARVKKAADMNCDAIEPDNMMAYQESSIGVEVSEADQIDYNTWFAGVVHEHGMKVGVKNSVDLAFVLEPYFDFALNEECFQWNECEVYQKSFIAAGKPVFNVEYRKTM---------DHCDLANSLGIDSIVKNLKLDSSM-CSCSD 1078
            L    W P +GD + + L   ++   A  V+ ID+ D  Q TI +L +  + VVCY S G+VESWR D   F S  +G  + GWAGE WLD +   VR+IM  R+  A    CD +EPDN+ AY   S G ++    Q+D+N + A   H  G+ VG+KN +  A  L PYFDFA+NE+CF++NEC VY   FI AGKPVFN EY +           + C  AN + + +++ ++ LD S+  SCS+
Sbjct:   41 LARSQWVPALGDTWQWQLSGKLNTAYAATVYDIDLFDVSQNTIAELKSKGQRVVCYFSAGSVESWRPDFKRFASKDIGAALNGWAGERWLDTRSTAVRQIMIERLDLAKIKGCDGVEPDNVDAYMHRS-GFKLDSHAQMDFNRFLAASAHARGLLVGLKNDLPNAAALMPYFDFAVNEQCFEYNECAVYSV-FIDAGKPVFNAEYARRYQINTHGARDELCRKANLMRMQTLILSVDLDDSVRYSCSE 286
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BLAST of mRNA_H-paniculata_contig5964.13612.1 vs. uniprot
Match: A0A7X9IZM4_9DELT (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X9IZM4_9DELT)

HSP 1 Score: 184 bits (467), Expect = 1.240e-48
Identity = 98/234 (41.88%), Postives = 135/234 (57.69%), Query Frame = 2 
Query:  383 WTPKVGDHYNYNLQLPVDIGAAVEVFFIDM-DGQQQTIDDLHAINKAVVCYISIGTVESWRADSLEFPSGAVGGDVAGWAGENWLDVKDPTVREIMTARVKKAADMNCDAIEPDNMMAYQESSIGVEVSEADQIDYNTWFAGVVHEHGMKVGVKNSVDLAFVLEPYFDFALNEECFQWNECEVYQKSFIAAGKPVFNVEYRKTM---DHCDLANSLGIDSIVKNLKLDSSMCSC 1072
            W P  G  + + L   +D    VE++ ID+ +  Q  ID L A    V+CY S G+ E WR D+ +FP+ AVG  + GW GE WLD++ P VR IM AR+ +A    CD +EPDN+ AY   S G  +  A Q+DYN + A   H  G+ VG+KN ++    L   FD+ALNEECFQW+EC++  + F+ AGK VF VEY         C  AN+L  D+++K L LD+    C
Sbjct:  102 WRPAPGTRWQWQLTGTIDDSLDVEMYDIDLFEAPQAVIDGLRARGVVVICYFSAGSREEWREDAGDFPAAAVGEPLDGWPGERWLDIRSPDVRRIMQARLDRAVARRCDGVEPDNVDAYANDS-GFPLIAAHQLDYNRFLAAEAHARGLSVGLKNDLEQVEDLLADFDWALNEECFQWDECDLL-RPFVVAGKAVFQVEYGDAGLAGTICPRANALDFDTLIKRLDLDAWRIPC 333
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BLAST of mRNA_H-paniculata_contig5964.13612.1 vs. uniprot
Match: A0A353ECN5_9GAMM (Glyco_hydro_114 domain-containing protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A353ECN5_9GAMM)

HSP 1 Score: 181 bits (459), Expect = 2.140e-48
Identity = 95/227 (41.85%), Postives = 139/227 (61.23%), Query Frame = 2 
Query:  413 YNLQLPVDIGAAVEVFFIDMDGQQQTIDDLHAIN---KAVVCYISIGTVESWRADSLEFPSGAVGGDVAGWAGENWLDVKDPTVREIMTARVKKAADMNCDAIEPDNMMAYQESSIGVEVSEADQIDYNTWFAGVVHEHGMKVGVKNSVDLAFVLEPYFDFALNEECFQWNECEVYQKSFIAAGKPVFNVEYRKTM--------DHCDLANSLGIDSIVKNLKLDSS 1060
            ++ Q+  D+ ++  V  ID+D    + +D+ +I    K V+CY S G+ E WR D  +F S  +G ++ GWAGE WLD++   VR++M  R+  AA   CDAIEPDN+  Y  S+ G+ ++  +Q+DYN + A   H + + +G+KN+VDL   LEPYFDFA+NEEC QW+ECE   + F  AGK +FN EY  T           C  A+SLG+ S+V +L LD+S
Sbjct:    3 WDWQISGDVNSSRSVDAIDIDLFDNSSEDITSIKSTGKLVICYFSAGSSEDWRDDFDKFQSSDMGANLDGWAGERWLDIRSENVRQVMADRIALAAQKGCDAIEPDNVDGYSNSN-GLGLTAENQLDYNQYLAITAHSYDLAIGLKNTVDLVDRLEPYFDFAVNEECHQWSECETL-RPFTQAGKAIFNAEYSSTYKTNTSSFNSMCTTADSLGMHSVVFSLDLDNS 227
[Close]
BLAST of mRNA_H-paniculata_contig5964.13612.1 vs. uniprot
Match: A0A7V5U264_9BACT (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Thermodesulfatator atlanticus TaxID=501497 RepID=A0A7V5U264_9BACT)

HSP 1 Score: 181 bits (458), Expect = 5.410e-48
Identity = 97/239 (40.59%), Postives = 136/239 (56.90%), Query Frame = 2 
Query:  365 ELGGKSWTPKVGDHYNYNLQLPVDIGAAVEVFFIDM-DGQQQTIDDLHAINKAVVCYISIGTVESWRADSLEFPSGAVGGDVAGWAGENWLDVKDPTVR-EIMTARVKKAADMNCDAIEPDNMMAYQESSIGVEVSEADQIDYNTWFAGVVHEHGMKVGVKNSVDLAFVLEPYFDFALNEECFQWNECEVYQKSFIAAGKPVFNVEYR-KTMDHCDLANSLGIDSIVKNLKLDSSMCSC 1072
            E   K W P  G  + + L   +D     E+F +D+ +   + I++LH + K V+CY S GT E WR D+ +FP   +G  +  W  E WLD++   V   IM AR+  A +  CD +EPDN+ AYQ  S G  ++  DQ++YN W A   H+ G+ VG+KN +D    LEPYFD+ALNEECF + ECE   + FI  GK VF VEY     D C  AN++G  S+ K  +LD+   +C
Sbjct:   42 ESSKKIWRPSPGTTWQWQLTGEIDTSLKAEMFDVDLFETPPEVIEELHRLGKVVICYFSAGTYEPWRPDAEKFPEEILGEPLVDWPDERWLDIRRLDVLGPIMEARLDLAVEKGCDGVEPDNVDAYQNES-GFPLTYEDQLNYNLWLAEQAHKRGLSVGLKNDLDQIPALEPYFDWALNEECFYYGECEKL-RPFIEKGKAVFQVEYYLDPEDFCPEANAMGFSSMKKRPELDAWRIAC 278
[Close]
BLAST of mRNA_H-paniculata_contig5964.13612.1 vs. uniprot
Match: A0A1I0KAA5_9DELT (Glyco_hydro_114 domain-containing protein n=3 Tax=Stigmatella TaxID=40 RepID=A0A1I0KAA5_9DELT)

HSP 1 Score: 180 bits (456), Expect = 9.470e-48
Identity = 94/234 (40.17%), Postives = 139/234 (59.40%), Query Frame = 2 
Query:  383 WTPKVGDHYNYNLQLPVDIGAAVEVFFIDM-DGQQQTIDDLHAINKAVVCYISIGTVESWRADSLEFPSGAVGGDVAGWAGENWLDVKDPTVREIMTARVKKAADMNCDAIEPDNMMAYQESSIGVEVSEADQIDYNTWFAGVVHEHGMKVGVKNSVDLAFVLEPYFDFALNEECFQWNECEVYQKSFIAAGKPVFNVEY---RKTMDHCDLANSLGIDSIVKNLKLDSSMCSC 1072
            W P  G  +   L   ++    V V+ +D+ D    T++ L A  + V+CY S G+ E+WR+D+  FP+ A+G  + GW GE WLD+++  VR+IM  R++ A    CDA++PDN+  Y  ++ G +++ ADQ+ +N + A   H  G+ VG+KN V     L   FDF +NEECFQ++ECE     FIAAGKPVF++EY         C  AN+L  D++VKNL LD+   SC
Sbjct:   47 WRPAPGTRWQIQLNGTLNTSFNVAVYDVDLFDTPVSTLNALKAQGRKVICYFSAGSYENWRSDAGSFPAAALGNALDGWPGERWLDIRNTKVRDIMRTRIELARQKGCDAVDPDNVDGYANAT-GFKLTSADQLSFNRFLATEAHARGLAVGLKNDVGQVAQLVNDFDFQVNEECFQYDECEELLP-FIAAGKPVFSIEYGGNALAQQICPQANALNFDTLVKNLDLDAPRISC 278
[Close]
BLAST of mRNA_H-paniculata_contig5964.13612.1 vs. uniprot
Match: UPI001FF197C9 (endo alpha-1,4 polygalactosaminidase n=1 Tax=Alcanivorax sp. S6407 TaxID=2926424 RepID=UPI001FF197C9)

HSP 1 Score: 179 bits (454), Expect = 1.140e-47
Identity = 93/233 (39.91%), Postives = 134/233 (57.51%), Query Frame = 2 
Query:  383 WTPKVGDHYNYNLQLPVDIGAAVEVFFIDM-DGQQQTIDDLHAINKAVVCYISIGTVESWRADSLEFPSGAVGGDVAGWAGENWLDVKDPTVREIMTARVKKAADMNCDAIEPDNMMAYQESSIGVEVSEADQIDYNTWFAGVVHEHGMKVGVKNSVDLAFVLEPYFDFALNEECFQWNECEVYQKSFIAAGKPVFNVEYRKTMDH------CDLANSLGIDSIVKNLKLDSS 1060
            + P V   +   LQ P D  ++ ++F +D+ D     I+DLHA  + V+CY S GT E+WRAD   F     G  +A W GE WLD++   VREIM  R++ AA   CD ++PDN+  Y   S G  +++ DQ+ +N + A V H+HG+ + +KN+ +LA  L    DFA+NE C QW+ECE   KSFI AGKPVF+++Y    DH      C   N L  ++    + LD+S
Sbjct:   26 YQPSVETSWQIQLQGPPDTSSSADLFILDLFDTPVSVIEDLHARGRHVICYFSAGTAENWRADHHRFHPAEKGHGLANWPGERWLDIRSANVREIMAERIQLAARKGCDGVDPDNVDGYSNHS-GFVLTQKDQLAFNRYLARVAHQHGLAISLKNNAELAGALVDDMDFAVNESCHQWHECEQL-KSFIKAGKPVFHIDYLYAHDHQARAPFCQRMNRLAFNTQTLPVALDNS 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5964.13612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ77_9PHAE6.130e-9761.29Glyco_hydro_114 domain-containing protein n=2 Tax=... [more]
D7FRL2_ECTSI2.030e-7251.64Endo alpha-1,4 polygalactosaminidase precusor n=1 ... [more]
A0A7V4LGC7_9DELT6.900e-5243.16Endo alpha-1,4 polygalactosaminidase n=1 Tax=Delta... [more]
A0A836UAD2_9BACT3.150e-4942.24Endo alpha-1,4 polygalactosaminidase n=1 Tax=Candi... [more]
A0A366H1H2_9BURK1.240e-4840.73Glyco_hydro_114 domain-containing protein n=1 Tax=... [more]
A0A7X9IZM4_9DELT1.240e-4841.88Endo alpha-1,4 polygalactosaminidase n=1 Tax=Myxoc... [more]
A0A353ECN5_9GAMM2.140e-4841.85Glyco_hydro_114 domain-containing protein (Fragmen... [more]
A0A7V5U264_9BACT5.410e-4840.59Endo alpha-1,4 polygalactosaminidase n=1 Tax=Therm... [more]
A0A1I0KAA5_9DELT9.470e-4840.17Glyco_hydro_114 domain-containing protein n=3 Tax=... [more]
UPI001FF197C91.140e-4739.91endo alpha-1,4 polygalactosaminidase n=1 Tax=Alcan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5964contigH-paniculata_contig5964:7382..11528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.5
Seed ortholog evalue3.2e-83
Seed eggNOG ortholog2880.D7FPZ5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Endo alpha-1,4 polygalactosaminidase
EggNOG OGs2RCTR@2759,COG3868@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2224
Cds size1059
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5964.13612.1prot_H-paniculata_contig5964.13612.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5964 8492..11473 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.4933558-UTR-H-paniculata_contig5964:7381..84911622930657.4933558-UTR-H-paniculata_contig5964:7381..8491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5964 7382..8491 -
1691481392.5515351-UTR-H-paniculata_contig5964:7381..84911691481392.5515351-UTR-H-paniculata_contig5964:7381..8491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5964 7382..8491 -
1622930657.6174603-UTR-H-paniculata_contig5964:11473..115281622930657.6174603-UTR-H-paniculata_contig5964:11473..11528Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5964 11474..11528 -
1691481392.6311145-UTR-H-paniculata_contig5964:11473..115281691481392.6311145-UTR-H-paniculata_contig5964:11473..11528Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5964 11474..11528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.510254-CDS-H-paniculata_contig5964:8491..85661622930657.510254-CDS-H-paniculata_contig5964:8491..8566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5964 8492..8566 -
1691481392.5642378-CDS-H-paniculata_contig5964:8491..85661691481392.5642378-CDS-H-paniculata_contig5964:8491..8566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5964 8492..8566 -
1622930657.5315342-CDS-H-paniculata_contig5964:8795..89091622930657.5315342-CDS-H-paniculata_contig5964:8795..8909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5964 8796..8909 -
1691481392.5739563-CDS-H-paniculata_contig5964:8795..89091691481392.5739563-CDS-H-paniculata_contig5964:8795..8909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5964 8796..8909 -
1622930657.5542445-CDS-H-paniculata_contig5964:9136..93311622930657.5542445-CDS-H-paniculata_contig5964:9136..9331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5964 9137..9331 -
1691481392.5894604-CDS-H-paniculata_contig5964:9136..93311691481392.5894604-CDS-H-paniculata_contig5964:9136..9331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5964 9137..9331 -
1622930657.5676115-CDS-H-paniculata_contig5964:9633..97141622930657.5676115-CDS-H-paniculata_contig5964:9633..9714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5964 9634..9714 -
1691481392.60072-CDS-H-paniculata_contig5964:9633..97141691481392.60072-CDS-H-paniculata_contig5964:9633..9714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5964 9634..9714 -
1622930657.582424-CDS-H-paniculata_contig5964:10367..105431622930657.582424-CDS-H-paniculata_contig5964:10367..10543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5964 10368..10543 -
1691481392.6121707-CDS-H-paniculata_contig5964:10367..105431691481392.6121707-CDS-H-paniculata_contig5964:10367..10543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5964 10368..10543 -
1622930657.5952466-CDS-H-paniculata_contig5964:11055..114731622930657.5952466-CDS-H-paniculata_contig5964:11055..11473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5964 11056..11473 -
1691481392.621792-CDS-H-paniculata_contig5964:11055..114731691481392.621792-CDS-H-paniculata_contig5964:11055..11473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5964 11056..11473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5964.13612.1

>prot_H-paniculata_contig5964.13612.1 ID=prot_H-paniculata_contig5964.13612.1|Name=mRNA_H-paniculata_contig5964.13612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=353bp
MKFSVAAAFLALSARAAAENSDFDKILGMIAALQEEADALALRYYEQDLE
LVNLRETCGQPIGSTPIPIPIPADVPSSTPMTTQPTFAEPTPASSDEAER
VQPELGGKSWTPKVGDHYNYNLQLPVDIGAAVEVFFIDMDGQQQTIDDLH
AINKAVVCYISIGTVESWRADSLEFPSGAVGGDVAGWAGENWLDVKDPTV
REIMTARVKKAADMNCDAIEPDNMMAYQESSIGVEVSEADQIDYNTWFAG
VVHEHGMKVGVKNSVDLAFVLEPYFDFALNEECFQWNECEVYQKSFIAAG
KPVFNVEYRKTMDHCDLANSLGIDSIVKNLKLDSSMCSCSDPNRDINCGS
II*
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mRNA from alignment at H-paniculata_contig5964:7382..11528-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5964.13612.1 ID=mRNA_H-paniculata_contig5964.13612.1|Name=mRNA_H-paniculata_contig5964.13612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4147bp|location=Sequence derived from alignment at H-paniculata_contig5964:7382..11528- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCACCATCACCACTGCCCTCACTCCAGCAGTTAGCGTCGATAAACTCCA
CGACAATGAAATTTTCAGTAGCAGCAGCCTTTCTTGCCCTGTCCGCGCGT
GCCGCCGCGGAGAACTCAGACTTCGACAAGATCTTGGGCATGATCGCAGC
GCTACAGGAGGAGGCGGATGCCCTGGCTCTCCGTTACTATGAGCAGGACC
TCGAGCTCGTCAACCTTAGAGAAACCTGTGGCCAACCAATAGGGTCGACC
CCAATCCCCATTCCCATCCCTGCTGACGTGCCCTCGTCCACACCTATGAC
GACTCAGCCAACATTTGCTGAGCCAACACCCGCATCAAGTGACGAGGCAG
AGCGGGTGCAACCGGAGCTGGGGGGAAAATCATGGACTCCCAAGGTCGGT
GACCACTATAATTACAATTTACAACTACCTGTGGATATCGGTGCCGCCGT
GGAGGTGTTCTTCATCGACATGGGTACGTGTGTGCGTTGTTTACGTGGTG
TCCGGGTTCCGTTGTCGACACGAGGTGCAGATTTGTAGCTTTCGTGTTGT
TCGTGGTGGGTTGTGTTTTTTTTGTATTGGTATCTTGCTCTGTGTGCGAT
ACAGACAAGGTGAAGTGGTGATTTATGCGCATAACGTCCTGCGGCCTCAA
AAGAGTACACCAGTTGAACAACTCTCCCATGTAAATTTACGAATCTTCCC
ACCATCGTTTCACCTGATTTTAGTGCAAATTGGGGAGCCCCGGTACACGA
GGGACTGTGGTAATGCATAACTCTCGACACACTTGGATAAAAAAATACTT
GTCAAACTACATCTGATGTGAACATGATGGGCCGTGCCAACAACGTATGA
GCATAACACACTTTCTCTCGCTACTTGGGTGCAATCTACGCCAAGCGCGT
AAAACTCACAATTTAGCAAACGGATTGACAGGGACCAATATACCCTCCGC
CGTCCCCGTTGTGTTTTTTGTTCCGAAAATAATAGATGGGCAACAACAGA
CTATCGATGACCTTCACGCCATAAATAAAGCCGTCGTTTGCTACATCAGC
ATCGGTACCGTGGAAAGCTGGCGAGCGGACAGCCTGGAATTCCCTTCCGG
CGCGGTCGGCGGAGATGTGGCAGGCTGGGCTGGCGAGAATTGGCTCGACG
TGAAAGACCCGGTGAGGATGTTGGCCATTTTCTGCATACATCCTTTTTTT
TCATGATAGGATAGTGTTTGTGTAGAGTTTAGGTACCGTTTATTTAGTAT
CCATATCTAGAATGGACTCGTGCCCATTAGACGCGAGCAACCCCCTCCCC
CCTCCCCCCCCTCCCCCCCCTCCCCCGGTGATGAGGGGGACTCGGCGGAG
ACAGAAAATACGCGTGTTGCTGTTCTGTGGTTGCTCTAGACTACTTAACT
GTCTCCCACAACATGAAACAGCTGAATTATGGCAAGCCTGTGCGTACATT
TTATTGAATGACCATAGCATGCGAGGAAATATGTTGGAATAGTGTTTCGA
TTTGTCAAGACGATGTTTTGGGGGCCGATGCCAACATATTGAAAGTGTAT
GTGTAACAGATATAGCACTATTGTCGGGTCATATGCTATTGTCGGGTCAT
ATGCTCCGATACGTTTTTTCAAGTCATTACATGAGTACACATATACATCC
GAATGTTCGTTCGTCCAGTTGCTTTCCCCTGTCCGACGTTCGTGTGTGCT
AAAATTCGTCGTGTATCCTGAATCATTGCAAGACTTGCCCATGACCGATC
ATTTTCCTGATACATATCAACAATTTCGATTATTGCTACTCTTTTTTTGC
TCTCGGACGCGAAGACTGTCCGCGAGATCATGACCGCGCGAGTGAAGAAG
GCAGCGGATATGAACTGCGACGCTATCGAGCCGGACAATATGATGGTGAG
CCCGGCAAGACGTTGCTTAACACGGCGATTTCATATCCAAAAAGCGTCAT
CTTTGAATTTAACAGGAACGAGGTGTTTTTCGTTTCTCAACCGTGAGGTT
TCCCGTACTGTAAGTAAGAGCAGAACACCAAAACGTGGCGTGTCGCGAGT
AGAAGAAATGTTTGCTTCATGAACCAGATGTGCCTCCTACGTGGTAAACT
GTCACGTTGCAATGGCACAACTCGTTATACAAAATGTGCCCTAATAATTC
TTGCCATGTACAACCATTAAAATGATCCCGTCTTTCCCTTTCCACAGGCA
TACCAAGAGAGCAGCATCGGTGTAGAAGTCTCCGAGGCCGACCAAATCGA
CTACAACACATGGTTCGCTGGAGTGGTGCACGAGCATGGTATGAAGGTGG
GCGTCAAGAACTCGGTGGATCTAGCATTTGTCCTGGAGCCCTACTTCGAT
TTCGCCCTTAACGAGGAGTGCTTCCAGTGGAACGAATGCGAGGTAAGGCG
TTATTGCTGTTAGCCCATACACAAATATGTCAGTTTTTTATCGTTTTGCT
GGATTCAATTAAATCTACAGTGCACCAGCTTTGAAGGTAGCTCACTCGAA
ATGCCAGGGGACATGGTGCACGAGCCTGTGCAGCCGCGTGAAAGAGCACC
TCCATGGACGCACTCATTCCCTTCACCTGTACATTGCGACATCACTTCTT
TTGCTATACATAATTGCAGGTGTACCAGAAGAGTTTCATTGCCGCTGGCA
AGCCTGTTTTCAACGTGGAGTACCGGAAAACGATGGACCACTGCGACTTG
GCCAACTCTCTGGGCATTGACTCCATCGTCAAGGTGATTTATCAGTCAAT
ACTGACTTCTGTATAACTTTTGGCTATGTAGGTTCGTTATTCTGTTGCTA
TTTCGATCTCTTTCCATCCTTGTTTCAGGATCATGAAAAAAAAAATGATG
TCTTAGTACATGTCCGCTCACGCCCCCCGCGCTCACATGGCGAACATAAC
GTTCTTCGTCTGTCAACTCCACCTGATCGTTTCTGTTTCTGTTTTTTCTT
TTGTATTTGCAGAACCTGAAACTGGACTCGTCGATGTGCAGCTGTTCCGA
CCCCAACCGGGACATCAACTGTGGATCGATTATCTAAGGGCTCTTGAAGT
CTACGTTCCGCCTGCAAGTAAGCAGACATCGGCTATCAAGGAAGCTCTCT
TTCCCACACACACCCTGGATGGTGCGATTTATATCTATGCACCATGTGGG
TACCTATTGCTGTCCCGGCGGTGGTTGGTAGCGACGTGTTGCCTTTCTGT
GGACAAAGTTTGTGAATCCAGTAGAAAATGGTGTCACTAGTTAGCATTCA
GAGGGAAGGTTGGAATTATGTGTGACGCTGAAGCAGTACTGAACGGCGAG
CGAATAGTTACCGGTGTTGCCCATCATAGCACAACGAGGCGCACCTCACT
AGTTGTTTTTTTTCGTGCTGTTACACCTGTGTCTTGTTCCCTCGTGCACG
GGTTTTTGTTGGGTGTCATTGTGTTCATGTGGTTGGAGTGAAATGATATC
TCATTTGATGTGCGATGTACTTTTTCCATTTCACCCTGTTTGGCGTTTGA
AACTAGCGAACCCAACGTATTTATTTTCTATTTTTGTGTTGTGATAAGGT
GGACTCTAGAGGTGTACACAGGGTATATGCACAAGAGTACTTGATTCAAT
AGTGAAGTCATTACCATAGTGGGAAGATTATGTTGATCCCGGTCACTAGT
GAAGTCATTACCGAAGTTATTCCTCTCGATTTTAAGAACACATACTTAAT
GGGTATTTTCGAGGTTGAGGCGGGGGGTTAAATAGAGGACTAGTCAAGGC
CCAGATGTGGAGTGCTTTGTTTTTGTAGAATAACGGTGTAACTGTCATCG
GTTTCGAATATTGTGTTGGACACAAATGGGTATCCGTAATGATGCGTTTG
CGAGATAATTTTGAGCCTTGTAGAGGTAATAAAAAGAAGGTAAAAGGTGA
TACTTGGGAATGGGGATCAACTTTCTTGTTGGGATTGAAGTACCCTTGAA
TTTGAATGGAATACTCCAAAAATGGTGGTGGCGAAAAGAATTTTCCGTGC
GAATTGAGGCATGAACAGGTTTCCAAAATCATTGTGCAGACACGAAGTCA
CCCCGGAAAGTGCTTTTCGTTAGCACCATTTTCGAAGTATTCCATTCAAA
TTCAAGGGTACTTCAATCCCAACAAGAAAGGTGATCCACAATTCTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig5964:7382..11528-

>mRNA_H-paniculata_contig5964.13612.1 ID=mRNA_H-paniculata_contig5964.13612.1|Name=mRNA_H-paniculata_contig5964.13612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2118bp|location=Sequence derived from alignment at H-paniculata_contig5964:7382..11528- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATTTTCAGTAGCAGCAGCCTTTCTTGCCCTGTCCGCGCGTGCCGC
CGCGGAGAACTCAGACTTCGACAAGATCTTGGGCATGATCGCAGCGCTAC
AGGAGGAGGCGGATGCCCTGGCTCTCCGTTACTATGAGCAGGACCTCGAG
CTCGTCAACCTTAGAGAAACCTGTGGCCAACCAATAGGGTCGACCCCAAT
CCCCATTCCCATCCCTGCTGACGTGCCCTCGTCCACACCTATGACGACTC
AGCCAACATTTGCTGAGCCAACACCCGCATCAAGTGACGAGGCAGAGCGG
GTGCAACCGGAGCTGGGGGGAAAATCATGGACTCCCAAGGTCGGTGACCA
CTATAATTACAATTTACAACTACCTGTGGATATCGGTGCCGCCGTGGAGG
TGTTCTTCATCGACATGGATGAAATTTTCAGTAGCAGCAGCCTTTCTTGC
CCTGTCCGCGCGTGCCGCCGCGGAGAACTCAGACTTCGACAAGATCTTGG
GCATGATCGCAGCGCTACAGGAGGAGGCGGATGCCCTGGCTCTCCGTTAC
TATGAGCAGGACCTCGAGCTCGTCAACCTTAGAGAAACCTGTGGCCAACC
AATAGGGTCGACCCCAATCCCCATTCCCATCCCTGCTGACGTGCCCTCGT
CCACACCTATGACGACTCAGCCAACATTTGCTGAGCCAACACCCGCATCA
AGTGACGAGGCAGAGCGGGTGCAACCGGAGCTGGGGGGAAAATCATGGAC
TCCCAAGGTCGGTGACCACTATAATTACAATTTACAACTACCTGTGGATA
TCGGTGCCGCCGTGGAGGTGTTCTTCATCGACATGGATGGGCAACAACAG
ACTATCGATGACCTTCACGCCATAAATAAAGCCGTCGTTTGCTACATCAG
CATCGGTACCGTGGAAAGCTGGCGAGCGGACAGCCTGGAATTCCCTTCCG
GCGCGGTCGGCGGAGATGTGGCAGGCTGGGCTGGCGAGAATTGGCTCGAC
GTGAAAGACCCGATGGGCAACAACAGACTATCGATGACCTTCACGCCATA
AATAAAGCCGTCGTTTGCTACATCAGCATCGGTACCGTGGAAAGCTGGCG
AGCGGACAGCCTGGAATTCCCTTCCGGCGCGGTCGGCGGAGATGTGGCAG
GCTGGGCTGGCGAGAATTGGCTCGACGTGAAAGACCCGACTGTCCGCGAG
ATCATGACCGCGCGAGTGAAGAAGGCAGCGGATATGAACTGCGACGCTAT
CGAGCCGGACAATATGATGACTGTCCGCGAGATCATGACCGCGCGAGTGA
AGAAGGCAGCGGATATGAACTGCGACGCTATCGAGCCGGACAATATGATG
GCATACCAAGAGAGCAGCATCGGTGTAGAAGTCTCCGAGGCCGACCAAAT
CGACTACAACACATGGTTCGCTGGAGTGGTGCACGAGCATGGTATGAAGG
TGGGCGTCAAGAACTCGGTGGATCTAGCATTTGTCCTGGAGCCCTACTTC
GATTTCGCCCTTAACGAGGAGTGCTTCCAGTGGAACGAATGCGAGGCATA
CCAAGAGAGCAGCATCGGTGTAGAAGTCTCCGAGGCCGACCAAATCGACT
ACAACACATGGTTCGCTGGAGTGGTGCACGAGCATGGTATGAAGGTGGGC
GTCAAGAACTCGGTGGATCTAGCATTTGTCCTGGAGCCCTACTTCGATTT
CGCCCTTAACGAGGAGTGCTTCCAGTGGAACGAATGCGAGGTGTACCAGA
AGAGTTTCATTGCCGCTGGCAAGCCTGTTTTCAACGTGGAGTACCGGAAA
ACGATGGACCACTGCGACTTGGCCAACTCTCTGGGCATTGACTCCATCGT
CAAGGTGTACCAGAAGAGTTTCATTGCCGCTGGCAAGCCTGTTTTCAACG
TGGAGTACCGGAAAACGATGGACCACTGCGACTTGGCCAACTCTCTGGGC
ATTGACTCCATCGTCAAGAACCTGAAACTGGACTCGTCGATGTGCAGCTG
TTCCGACCCCAACCGGGACATCAACTGTGGATCGATTATCTAAAACCTGA
AACTGGACTCGTCGATGTGCAGCTGTTCCGACCCCAACCGGGACATCAAC
TGTGGATCGATTATCTAA
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