mRNA_H-paniculata_contig5963.13610.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5963.13610.1
Unique NamemRNA_H-paniculata_contig5963.13610.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5963.13610.1 vs. uniprot
Match: D8LSN2_ECTSI (Conserved oligomeric Golgi complex subunit 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN2_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.230e-25
Identity = 69/135 (51.11%), Postives = 75/135 (55.56%), Query Frame = 1 
Query:    1 MSEQVYVAWLLGGGAAREAKAK----------------EQATGAEAGAGVDAGDLAEERSTLSPDTSYMAELGAWGVVQECLDAYHQRRSAT----------GGATGAGSPLELPRVVSLLPEAGPSLLSAYETR 327
            MS+Q YV WLLGGGAA E                    ++A+G +A           ERSTLSPDTSYMAE GAW VVQ CLD YHQRRS            G A  AGS   LPR V LLPEAGP+LLSAYE R
Sbjct: 1087 MSQQAYVTWLLGGGAAEEXXXXXXXXXXXXXXXXXXXXDRASGGKA---------YTERSTLSPDTSYMAEAGAWSVVQACLDEYHQRRSVAVATGSGNADGGSAATAGSTEMLPRAVGLLPEAGPALLSAYEAR 1212
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5963.13610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSN2_ECTSI2.230e-2551.11Conserved oligomeric Golgi complex subunit 5 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5963contigH-paniculata_contig5963:10054..11089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog2880.D8LSN2
Preferred nameCOG5
KEGG koko:K20292
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000212,GO:0000226,GO:0000280,GO:0000910,GO:0000916,GO:0001675,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005794,GO:0005802,GO:0006810,GO:0006888,GO:0006891,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0008150,GO:0009653,GO:0009987,GO:0010256,GO:0010927,GO:0012505,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0017119,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030029,GO:0030036,GO:0030154,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032588,GO:0032989,GO:0032991,GO:0033206,GO:0033363,GO:0036213,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044837,GO:0046907,GO:0048193,GO:0048219,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061024,GO:0061640,GO:0061982,GO:0061983,GO:0070013,GO:0070925,GO:0070971,GO:0071840,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1903046
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG2211@1,KOG2211@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_002295.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.3294878-CDS-H-paniculata_contig5963:10053..102521622930657.3294878-CDS-H-paniculata_contig5963:10053..10252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5963 10054..10252 -
1691481392.4994195-CDS-H-paniculata_contig5963:10053..102521691481392.4994195-CDS-H-paniculata_contig5963:10053..10252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5963 10054..10252 -
1622930657.3495984-CDS-H-paniculata_contig5963:10961..110891622930657.3495984-CDS-H-paniculata_contig5963:10961..11089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5963 10962..11089 -
1691481392.5132399-CDS-H-paniculata_contig5963:10961..110891691481392.5132399-CDS-H-paniculata_contig5963:10961..11089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5963 10962..11089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5963.13610.1prot_H-paniculata_contig5963.13610.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5963 10054..11089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5963.13610.1

>prot_H-paniculata_contig5963.13610.1 ID=prot_H-paniculata_contig5963.13610.1|Name=mRNA_H-paniculata_contig5963.13610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MSEQVYVAWLLGGGAAREAKAKEQATGAEAGAGVDAGDLAEERSTLSPDT
SYMAELGAWGVVQECLDAYHQRRSATGGATGAGSPLELPRVVSLLPEAGP
SLLSAYETR
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mRNA from alignment at H-paniculata_contig5963:10054..11089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5963.13610.1 ID=mRNA_H-paniculata_contig5963.13610.1|Name=mRNA_H-paniculata_contig5963.13610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1036bp|location=Sequence derived from alignment at H-paniculata_contig5963:10054..11089- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGAGCAGGTTTACGTTGCTTGGCTGCTGGGCGGCGGTGCTGCGCG
AGAAGCCAAAGCTAAGGAGCAGGCGACAGGGGCGGAGGCGGGAGCGGGTG
TCGACGCTGGAGATTTGGCGGAGGAGAGGTGGGTGCTGTTATTTGGCGTG
ATATCCGGCTATTTCTCACTCTCAAATTTCCCCTTTTCTGTTCGGGAGAG
GGACGGGGAGGGGAGGACAACCCTCCTTTTCGCTCTATGAAATTCTCATG
ATTGTAGTGAAATTACCCTGCTACAGTCAGTTGAACTATAACTCTGAACC
TCATATTATAAGCCATTCTCCCTGATATTTGAAGTTTGCTGGTATGCATG
GGCAAAGCTAGCCATCAGGGATTGCTTTGAGAGGAGCAAAGCCCTGTCCT
CCCGAGGACGAACGGTAAACGGTCTAACAAGGACGACATGCAAGCATGAG
TACGCTCCTCTCACCCACCCTCCCTATAGTGATCCAATTTTCCTGACAAG
TGTACGTACGTAGACAGCTCAAGTTTGAAGTCAGATGCGTAACCGCAAGA
TGGGTACAGCGGAGTTATTGCGTGGGCGTTAGAGCTTAGTGCCACCAACT
GCGGGAAGTGTGTTGACTTTGGAACGAGAATGCCGGTGGGTGAAAGATGG
GAGTAATTTAGGGGTGTCGGATTCGCTCAATTTAAAATCATTTCAAGTTA
CCCTCCCCCCCACCCCCCCCCCCTTGAGATTATTCAATTTGTTTGTAACA
ACCAAGTAAATCAGTAGCTTGAAGATGCTGAGCATATCTCTCCCCCTCCC
CCATGGGATCGCCTCCATTTGTCCATACTACATACAGGTCGACCTTGTCG
CCTGACACGAGCTACATGGCGGAACTAGGAGCATGGGGCGTTGTTCAAGA
ATGCCTTGACGCTTACCACCAGAGGCGAAGCGCAACCGGCGGCGCAACTG
GTGCCGGTTCGCCCTTAGAACTACCCCGTGTTGTCTCCCTCCTGCCCGAG
GCAGGGCCATCGCTGCTATCTGCATACGAGACTAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5963:10054..11089-

>mRNA_H-paniculata_contig5963.13610.1 ID=mRNA_H-paniculata_contig5963.13610.1|Name=mRNA_H-paniculata_contig5963.13610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig5963:10054..11089- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGAGCAGGTTTACGTTGCTTGGCTGCTGGGCGGCGGTGCTGCGCG
AGAAGCCAAAGCTAAGGAGCAGGCGACAGGGGCGGAGGCGGGAGCGGGTG
TCGACGCTGGAGATTTGGCGGAGGAGAGATGTCTGAGCAGGTTTACGTTG
CTTGGCTGCTGGGCGGCGGTGCTGCGCGAGAAGCCAAAGCTAAGGAGCAG
GCGACAGGGGCGGAGGCGGGAGCGGGTGTCGACGCTGGAGATTTGGCGGA
GGAGAGGTCGACCTTGTCGCCTGACACGAGCTACATGGCGGAACTAGGAG
CATGGGGCGTTGTTCAAGAATGCCTTGACGCTTACCACCAGAGGCGAAGC
GCAACCGGCGGCGCAACTGGTGCCGGTTCGCCCTTAGAACTACCCCGTGT
TGTCTCCCTCCTGCCCGAGGCAGGGCCATCGCTGCTATCTGCATACGAGA
CTAGAGTCGACCTTGTCGCCTGACACGAGCTACATGGCGGAACTAGGAGC
ATGGGGCGTTGTTCAAGAATGCCTTGACGCTTACCACCAGAGGCGAAGCG
CAACCGGCGGCGCAACTGGTGCCGGTTCGCCCTTAGAACTACCCCGTGTT
GTCTCCCTCCTGCCCGAGGCAGGGCCATCGCTGCTATCTGCATACGAGAC
TAGA
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