mRNA_H-paniculata_contig5961.13607.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5961.13607.1
Unique NamemRNA_H-paniculata_contig5961.13607.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5961.13607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5961contigH-paniculata_contig5961:7750..9432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size560
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5961.13607.1prot_H-paniculata_contig5961.13607.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5961 7811..9419 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.098225-UTR-H-paniculata_contig5961:7749..78101622930657.098225-UTR-H-paniculata_contig5961:7749..7810Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5961 7750..7810 -
1691481392.4086134-UTR-H-paniculata_contig5961:7749..78101691481392.4086134-UTR-H-paniculata_contig5961:7749..7810Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5961 7750..7810 -
1622930657.1573718-UTR-H-paniculata_contig5961:9419..94321622930657.1573718-UTR-H-paniculata_contig5961:9419..9432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5961 9420..9432 -
1691481392.4379945-UTR-H-paniculata_contig5961:9419..94321691481392.4379945-UTR-H-paniculata_contig5961:9419..9432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5961 9420..9432 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.1161125-CDS-H-paniculata_contig5961:7810..82271622930657.1161125-CDS-H-paniculata_contig5961:7810..8227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5961 7811..8227 -
1691481392.4197502-CDS-H-paniculata_contig5961:7810..82271691481392.4197502-CDS-H-paniculata_contig5961:7810..8227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5961 7811..8227 -
1622930657.1442225-CDS-H-paniculata_contig5961:9350..94191622930657.1442225-CDS-H-paniculata_contig5961:9350..9419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5961 9351..9419 -
1691481392.4287083-CDS-H-paniculata_contig5961:9350..94191691481392.4287083-CDS-H-paniculata_contig5961:9350..9419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5961 9351..9419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5961.13607.1

>prot_H-paniculata_contig5961.13607.1 ID=prot_H-paniculata_contig5961.13607.1|Name=mRNA_H-paniculata_contig5961.13607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MNPYGEGGGRPGGKPWGPPADEEATKGNEKEHNGAAAVPAVQAMDVAEQA
NGDAGGEHDSGKEGPVDAAASSDNNNSNSDQGDEIVTANTNDRPDAGSQS
PPGRYDDAQESPAFAVTNGDDQEDGAEDDTPEKEEMETGVKSNSKGRRAV
GKSSAKFELKE*
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mRNA from alignment at H-paniculata_contig5961:7750..9432-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5961.13607.1 ID=mRNA_H-paniculata_contig5961.13607.1|Name=mRNA_H-paniculata_contig5961.13607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1683bp|location=Sequence derived from alignment at H-paniculata_contig5961:7750..9432- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGATAGAAACATGAATCCCTACGGGGAGGGCGGGGGACGCCCCGGGG
GCAAGCCGTGGGGCCCACCAGCAGACGAAGAGGTGGGTGGGTGGGTGGGT
AGTTGGGTGGGTGGATTGTGGTTATTCAGCCTCACAGATGTCTGACTTCC
AATTACAATGGTCCGATGATGTATATGTGCCCGCTGCCTATTAATCTGCA
AAACAACACACAGAATACGTCCAGGTGAGTATAATTTTTGGATAACTCCC
CAAAAACTGTATAATCGGTTCGAGGGTACTTGCAGGTTTAGCTGAAATTC
TGAAATCTATCAGACATGAACTGAATGGTATTTTTATGCTTTCATTTTAT
AATTCCTCCGTGCCGCAGGTAAGTCAGTTGTGTTTGGCAATTTACATCTC
CGGCTCTAGAACTGTCCAGAGGCTGCGGTTGGAAACGTTGGAAACCTGGA
ATCCGATACTCATACGCGCTATCCTGAATTGCATTCCGAGTTGTGTATAA
GGATTAATGGACGCTCAAGATTGGGCTAATTTTGACTATTTTCACGTTTA
TTCTTTGGGAAAATTCGATAGGAGGTAATAATGTGGCTTTTTTCGGCCTT
CAGTTTTTTTGCGCCGCGCGTGCTCCCAAGAAGAAGTTGGATCATAACTG
TTGAAAAAATCGGATATGGTTTCGTGCCTCCATTAACTCAACCGACTTTG
CTTATGTAAATATAGGAAGTATATACATATATATATATAATCGTGAGATA
CTAAATTAGCATGTGTGGTAATGTCAACTGATCTCCATGAACCCTTTGGG
AAGTTCTGAGCTGCACATCAGTTGTGGAGTACTTGTTTATTATTTGGCAG
ATTAATAAAAAAATGGGTTTGGCCCTTTCAGCTCTACTCTAAATCTGAAA
GAAAAGCTCTCAAAACGGAAAAAATTGGACCCCTTTTGCACCTGAGATGC
ACTTGACCAGCTGTTTAGAGCTCGTCAAGGCATGATTCCGACGTATTCGC
CGTTATACGTTATTCACGACTAGTCGTTAGCACATCCGTATTCGGGCCGT
TACGAAGCCCAGTCCCTACAGGGTTCGTTGAGCTTGACCCGTTCTCCGTC
TCTCACCTCAAGACACCCACACCTATCCGCCTGTCCCCGTTCGTCTCCTC
TTACTTGGTATTTGCCGATGCTGTGCTGCTCTGTCCACGTGGTGTGTTCT
TGCAGGCAACGAAAGGCAATGAAAAAGAGCACAACGGGGCGGCAGCAGTA
CCAGCAGTCCAAGCAATGGACGTGGCCGAACAAGCTAATGGCGATGCTGG
CGGGGAACATGACAGTGGAAAAGAAGGACCAGTCGATGCTGCTGCGAGCA
GCGACAACAACAACAGCAACAGCGACCAGGGCGATGAGATCGTGACCGCA
AACACCAACGACCGACCTGACGCTGGGTCGCAGTCGCCCCCGGGGAGATA
CGATGATGCGCAGGAAAGCCCGGCATTCGCTGTAACCAATGGTGATGATC
AAGAAGACGGGGCAGAGGATGACACTCCTGAGAAGGAGGAAATGGAGACA
GGGGTTAAGAGTAACAGTAAAGGAAGGCGAGCAGTGGGGAAGTCTTCGGC
CAAATTTGAATTAAAGGAATGAATCTGATTGGCGGAAAAACGTCTGGTTG
ACGAGTGGTGACGAGGGGGGGTGAGAGGGGGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig5961:7750..9432-

>mRNA_H-paniculata_contig5961.13607.1 ID=mRNA_H-paniculata_contig5961.13607.1|Name=mRNA_H-paniculata_contig5961.13607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig5961:7750..9432- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCCCTACGGGGAGGGCGGGGGACGCCCCGGGGGCAAGCCGTGGGG
CCCACCAGCAGACGAAGAGATGAATCCCTACGGGGAGGGCGGGGGACGCC
CCGGGGGCAAGCCGTGGGGCCCACCAGCAGACGAAGAGGCAACGAAAGGC
AATGAAAAAGAGCACAACGGGGCGGCAGCAGTACCAGCAGTCCAAGCAAT
GGACGTGGCCGAACAAGCTAATGGCGATGCTGGCGGGGAACATGACAGTG
GAAAAGAAGGACCAGTCGATGCTGCTGCGAGCAGCGACAACAACAACAGC
AACAGCGACCAGGGCGATGAGATCGTGACCGCAAACACCAACGACCGACC
TGACGCTGGGTCGCAGTCGCCCCCGGGGAGATACGATGATGCGCAGGAAA
GCCCGGCATTCGCTGTAACCAATGGTGATGATCAAGAAGACGGGGCAGAG
GATGACACTCCTGAGAAGGAGGAAATGGAGACAGGGGTTAAGAGTAACAG
TAAAGGAAGGCGAGCAGTGGGGAAGTCTTCGGCCAAATTTGAATTAAAGG
AATGAGCAACGAAAGGCAATGAAAAAGAGCACAACGGGGCGGCAGCAGTA
CCAGCAGTCCAAGCAATGGACGTGGCCGAACAAGCTAATGGCGATGCTGG
CGGGGAACATGACAGTGGAAAAGAAGGACCAGTCGATGCTGCTGCGAGCA
GCGACAACAACAACAGCAACAGCGACCAGGGCGATGAGATCGTGACCGCA
AACACCAACGACCGACCTGACGCTGGGTCGCAGTCGCCCCCGGGGAGATA
CGATGATGCGCAGGAAAGCCCGGCATTCGCTGTAACCAATGGTGATGATC
AAGAAGACGGGGCAGAGGATGACACTCCTGAGAAGGAGGAAATGGAGACA
GGGGTTAAGAGTAACAGTAAAGGAAGGCGAGCAGTGGGGAAGTCTTCGGC
CAAATTTGAATTAAAGGAATGA
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