mRNA_H-paniculata_contig59600.13606.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59600.13606.1
Unique NamemRNA_H-paniculata_contig59600.13606.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59600.13606.1 vs. uniprot
Match: A0A6H5J8S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S1_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.080e-6
Identity = 33/49 (67.35%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 LLHGPAQVITGSQQGLPLTAVGEVAGAFGAVVGTSVLATKAQASTARTR 147
            LL    +VITGSQ GLPL AV EVA AFG VVGTS LATKAQ   A T+
Sbjct:  177 LLKQVLKVITGSQHGLPLQAVKEVAAAFGTVVGTSKLATKAQVWKAVTK 225
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BLAST of mRNA_H-paniculata_contig59600.13606.1 vs. uniprot
Match: D7FTR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTR0_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 2.490e-5
Identity = 29/42 (69.05%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 LLHGPAQVITGSQQGLPLTAVGEVAGAFGAVVGTSVLATKAQ 126
            LL    +VITGSQ GLPL AV EVA  FG  VGTS LATKAQ
Sbjct:  192 LLKQVLKVITGSQHGLPLQAVKEVAATFGTAVGTSKLATKAQ 233
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59600.13606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J8S1_9PHAE1.080e-667.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTR0_ECTSI2.490e-569.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59600contigH-paniculata_contig59600:663..830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.014314-CDS-H-paniculata_contig59600:662..8301622930657.014314-CDS-H-paniculata_contig59600:662..830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59600 663..830 -
1691481392.3937676-CDS-H-paniculata_contig59600:662..8301691481392.3937676-CDS-H-paniculata_contig59600:662..830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59600 663..830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59600.13606.1prot_H-paniculata_contig59600.13606.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59600 663..830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59600.13606.1

>prot_H-paniculata_contig59600.13606.1 ID=prot_H-paniculata_contig59600.13606.1|Name=mRNA_H-paniculata_contig59600.13606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
LLHGPAQVITGSQQGLPLTAVGEVAGAFGAVVGTSVLATKAQASTARTRG
YFRQH*
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mRNA from alignment at H-paniculata_contig59600:663..830-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59600.13606.1 ID=mRNA_H-paniculata_contig59600.13606.1|Name=mRNA_H-paniculata_contig59600.13606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig59600:663..830- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTTGCATGGCCCCGCTCAGGTGATCACCGGGTCACAGCAAGGGCTTCC
TCTGACAGCGGTTGGTGAGGTAGCCGGCGCCTTTGGAGCCGTCGTCGGGA
CCTCAGTATTGGCCACCAAGGCACAGGCAAGCACAGCTCGTACTAGAGGA
TATTTCAGGCAGCACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig59600:663..830-

>mRNA_H-paniculata_contig59600.13606.1 ID=mRNA_H-paniculata_contig59600.13606.1|Name=mRNA_H-paniculata_contig59600.13606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig59600:663..830- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTTGCATGGCCCCGCTCAGGTGATCACCGGGTCACAGCAAGGGCTTCC
TCTGACAGCGGTTGGTGAGGTAGCCGGCGCCTTTGGAGCCGTCGTCGGGA
CCTCAGTATTGGCCACCAAGGCACAGGCAAGCACAGCTCGTACTAGAGGA
TATTTCAGGCAGCACTGACTCTTGCATGGCCCCGCTCAGGTGATCACCGG
GTCACAGCAAGGGCTTCCTCTGACAGCGGTTGGTGAGGTAGCCGGCGCCT
TTGGAGCCGTCGTCGGGACCTCAGTATTGGCCACCAAGGCACAGGCAAGC
ACAGCTCGTACTAGAGGATATTTCAGGCAGCACTGA
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