mRNA_H-paniculata_contig59600.13605.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59600.13605.1
Unique NamemRNA_H-paniculata_contig59600.13605.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59600.13605.1 vs. uniprot
Match: D7FTR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTR0_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.770e-19
Identity = 59/127 (46.46%), Postives = 69/127 (54.33%), Query Frame = 1 
Query:    1 FMDTITGKHVGFPESELTILFGFFRTPM---PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGS-GRASDSGT-------GAYGADWTVAVACLWLLARPKGPVLSAIRGVFEVFARAAADRV 348
            F+D ITGKH GFPESEL  LFGFFR PM   P+                                 G+ GRA  SG+       GA GADWT+AVACL LLA+PK PV +A+ GVF+VFARA  DR+
Sbjct:  234 FVDNITGKHEGFPESELNTLFGFFRRPMAPGPATATTFSEENRDKFPQSQQRGGVGTNNSRPRTSPGNFGRAGKSGSRGGKEKDGAQGADWTMAVACLRLLAKPKEPVKAAVLGVFDVFARARGDRM 360
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59600.13605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTR0_ECTSI1.770e-1946.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59600contigH-paniculata_contig59600:1..348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930656.9059408-CDS-H-paniculata_contig59600:0..3451622930656.9059408-CDS-H-paniculata_contig59600:0..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59600 1..345 -
1691481392.3737488-CDS-H-paniculata_contig59600:0..3451691481392.3737488-CDS-H-paniculata_contig59600:0..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59600 1..345 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930656.9651315-UTR-H-paniculata_contig59600:345..3481622930656.9651315-UTR-H-paniculata_contig59600:345..348Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59600 346..348 -
1691481392.3841093-UTR-H-paniculata_contig59600:345..3481691481392.3841093-UTR-H-paniculata_contig59600:345..348Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59600 346..348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59600.13605.1prot_H-paniculata_contig59600.13605.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59600 1..345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59600.13605.1

>prot_H-paniculata_contig59600.13605.1 ID=prot_H-paniculata_contig59600.13605.1|Name=mRNA_H-paniculata_contig59600.13605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MDTITGKHVGFPESELTILFGFFRTPMPSPCSSSLSSSSNSAAATASSTT
ATGRGRRARRRLGSGRASDSGTGAYGADWTVAVACLWLLARPKGPVLSAI
RGVFEVFARAAADRV
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mRNA from alignment at H-paniculata_contig59600:1..348-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59600.13605.1 ID=mRNA_H-paniculata_contig59600.13605.1|Name=mRNA_H-paniculata_contig59600.13605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig59600:1..348- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTATGGACACAATCACGGGCAAGCACGTGGGCTTTCCCGAGAGCGAGCT
GACTATTCTCTTTGGATTTTTCCGAACTCCTATGCCAAGCCCCTGTTCCT
CCTCTTTGTCCTCTTCCTCCAACTCTGCCGCCGCCACCGCCAGTTCAACA
ACAGCAACGGGGAGGGGAAGAAGAGCGCGGAGAAGGTTGGGATCGGGTCG
CGCTAGCGACAGCGGCACAGGTGCATACGGTGCCGACTGGACAGTCGCCG
TGGCGTGTTTATGGTTGCTTGCTCGCCCCAAGGGACCTGTATTGAGCGCT
ATTCGCGGGGTGTTCGAAGTGTTCGCCCGCGCAGCCGCGGACAGGGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig59600:1..348-

>mRNA_H-paniculata_contig59600.13605.1 ID=mRNA_H-paniculata_contig59600.13605.1|Name=mRNA_H-paniculata_contig59600.13605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig59600:1..348- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACACAATCACGGGCAAGCACGTGGGCTTTCCCGAGAGCGAGCTGAC
TATTCTCTTTGGATTTTTCCGAACTCCTATGCCAAGCCCCTGTTCCTCCT
CTTTGTCCTCTTCCTCCAACTCTGCCGCCGCCACCGCCAGTTCAACAACA
GCAACGGGGAGGGGAAGAAGAGCGCGGAGAAGGTTGGGATCGGGTCGCGC
TAGCGACAGCGGCACAGGTGCATACGGTGCCGACTGGACAGTCGCCGTGG
CGTGTTTATGGTTGCTTGCTCGCCCCAAGGGACCTGTATTGAGCGCTATT
CGCGGGGTGTTCGAAGTGTTCGCCCGCGCAGCCGCGGACAGGGTTATGGA
CACAATCACGGGCAAGCACGTGGGCTTTCCCGAGAGCGAGCTGACTATTC
TCTTTGGATTTTTCCGAACTCCTATGCCAAGCCCCTGTTCCTCCTCTTTG
TCCTCTTCCTCCAACTCTGCCGCCGCCACCGCCAGTTCAACAACAGCAAC
GGGGAGGGGAAGAAGAGCGCGGAGAAGGTTGGGATCGGGTCGCGCTAGCG
ACAGCGGCACAGGTGCATACGGTGCCGACTGGACAGTCGCCGTGGCGTGT
TTATGGTTGCTTGCTCGCCCCAAGGGACCTGTATTGAGCGCTATTCGCGG
GGTGTTCGAAGTGTTCGCCCGCGCAGCCGCGGACAGGGTT
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