mRNA_H-paniculata_contig59598.13602.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59598.13602.1
Unique NamemRNA_H-paniculata_contig59598.13602.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59598.13602.1 vs. uniprot
Match: D7G4Q8_ECTSI (Geranylgeranyltransferase type 1 beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q8_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.530e-32
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 GSAYCAVASMELMGTLDTLPSNRREGLLEWCVKRQECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDATRARPFHLSCQNRVIGKWSCQP 276
            G  YCAVAS++L+G L+ LP  RR+G+LEWCV RQ  GFQGR NK  D+CCSFWVGATL LL    LVD  RAR FH+SCQNR+ G ++  P
Sbjct:  204 GPTYCAVASLKLLGVLEKLPIPRRQGILEWCVNRQGVGFQGRPNKPEDSCCSFWVGATLALLDGLDLVDDGRARQFHVSCQNRICGGFAKAP 295
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BLAST of mRNA_H-paniculata_contig59598.13602.1 vs. uniprot
Match: A0A8K0P2M1_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0P2M1_LADFU)

HSP 1 Score: 102 bits (254), Expect = 5.640e-24
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:    1 GSAYCAVASMELMGTLDT-LPSNRREGLLEWCVKRQECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDATRARPFHLSCQNRVIGKWS 267
            G+ YCAVA++ LMG L+T L S +  GL  WC+ RQ  GFQGR NK +DTC SFWVGATL LLG +HL+D  + +   LS Q+  IG +S
Sbjct:  214 GTTYCAVAALSLMGQLETCLSSKQLNGLRRWCISRQMSGFQGRPNKPVDTCYSFWVGATLKLLGVYHLIDYDQNKELLLSSQDSTIGGFS 303
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BLAST of mRNA_H-paniculata_contig59598.13602.1 vs. uniprot
Match: A0A6B2L8R2_9EUKA (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L8R2_9EUKA)

HSP 1 Score: 102 bits (253), Expect = 6.440e-24
Identity = 52/95 (54.74%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    1 GSAYCAVASMELMGTLDTLPSNRREGLLEWCVKRQECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDATRARPFHLSCQNRVIG--KWSCQPA 279
            GS YCA+AS+ LMG LD LP   ++ L +W + RQE GF GR NK  DTC SFWVGA+L +LG +HLVD    R + LSCQ +  G  KWS Q A
Sbjct:  200 GSTYCALASLALMGRLDELP--HKDKLTKWLIFRQEQGFNGRPNKIQDTCYSFWVGASLKILGAYHLVDEQNTRKYTLSCQKKNGGFAKWSSQSA 292
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BLAST of mRNA_H-paniculata_contig59598.13602.1 vs. uniprot
Match: UPI0014257D88 (geranylgeranyl transferase type-1 subunit beta-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257D88)

HSP 1 Score: 99.8 bits (247), Expect = 5.940e-23
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 GSAYCAVASMELMGTLD-TLPSNRREGLLEWCVKRQECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDATRARPFHLSCQNRVIGKWSCQP 276
            G+ +CA+AS+ LMG L+ TL   + E L  WC++RQ+ GFQGR NK +DTC SFWVGATL LL  FHLVD    R + LS Q+  +G +S  P
Sbjct:  212 GTTFCAIASLVLMGKLESTLSQKQLEKLKRWCIQRQQSGFQGRPNKPVDTCYSFWVGATLKLLDMFHLVDFNCNRTYILSTQDETMGGFSKWP 304
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BLAST of mRNA_H-paniculata_contig59598.13602.1 vs. uniprot
Match: A0A6P9AFI5_THRPL (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P9AFI5_THRPL)

HSP 1 Score: 99.4 bits (246), Expect = 7.590e-23
Identity = 45/90 (50.00%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 GSAYCAVASMELMGTL-DTLPSNRREGLLEWCVKRQECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDATRARPFHLSCQNRVIGKWS 267
            G  +CAVAS+ LMGTL  +L   + EGL  WC+ RQE GFQGR NK +DTC SFW+GATL ++  + L+D    R F ++ Q+ +IG +S
Sbjct:  208 GHTFCAVASLSLMGTLHSSLSQKQLEGLRRWCLMRQESGFQGRPNKPVDTCYSFWIGATLKIIDSYELIDKAENRNFIMATQSNIIGGFS 297
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BLAST of mRNA_H-paniculata_contig59598.13602.1 vs. uniprot
Match: UPI001ED88C98 (geranylgeranyl transferase type-1 subunit beta n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED88C98)

HSP 1 Score: 97.8 bits (242), Expect = 3.080e-22
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:    1 GSAYCAVASMELMGTLD-TLPSNRREGLLEWCVKRQECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDATRARPFHLSCQNRVIGKWS 267
            G+ +CAVA++ LMG L+  L   + +GL  WC+ RQ  GFQGR NK +DTC SFWVGATL LLG FHLVD  + + + LS Q+ + G +S
Sbjct:  215 GTTFCAVAALSLMGQLEGNLSEKQIDGLKRWCIYRQISGFQGRPNKPVDTCYSFWVGATLKLLGIFHLVDYQQNKDYLLSTQDPITGGFS 304
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BLAST of mRNA_H-paniculata_contig59598.13602.1 vs. uniprot
Match: A0A6J1SPJ8_FRAOC (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SPJ8_FRAOC)

HSP 1 Score: 97.4 bits (241), Expect = 4.000e-22
Identity = 47/93 (50.54%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 GSAYCAVASMELMGTLDTLPSNRR-EGLLEWCVKRQECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDATRARPFHLSCQNRVIG---KWS 267
            G  +CAVAS+ LMGTL T+ S R+ +GL  WC+ RQE GF GR NK +DTC SFWVGATL +L  + L++ +  R F L+ Q+ + G   KW+
Sbjct:  208 GHTFCAVASLSLMGTLHTMLSTRQLDGLRRWCMMRQESGFNGRPNKPVDTCYSFWVGATLKILDCYDLINKSENRSFTLATQDNITGGFAKWT 300
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BLAST of mRNA_H-paniculata_contig59598.13602.1 vs. uniprot
Match: A0A7J6ZVP8_9COLE (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Lamprigera yunnana TaxID=370605 RepID=A0A7J6ZVP8_9COLE)

HSP 1 Score: 97.1 bits (240), Expect = 5.250e-22
Identity = 47/89 (52.81%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 GSAYCAVASMELMGTLDTLPSNRREGLLEWCVKRQECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDATRARPFHLSCQNRVIGKWS 267
            GS YCA+A++ L   LD L   + EGL  W + RQ+ GFQGR NK IDTC SFWVGATL +L  F   D  + R F L+ QN VIG +S
Sbjct:  206 GSTYCAIATLTLCNRLDALTKAQLEGLRRWLLNRQDTGFQGRPNKPIDTCYSFWVGATLKMLDAFQYSDFEKNRSFVLATQNNVIGGFS 294
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BLAST of mRNA_H-paniculata_contig59598.13602.1 vs. uniprot
Match: UPI0014555ED7 (geranylgeranyl transferase type-1 subunit beta-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014555ED7)

HSP 1 Score: 96.7 bits (239), Expect = 9.700e-22
Identity = 48/93 (51.61%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    1 GSAYCAVASMELMGTLD-TLPSNRREGLLEWCVKRQECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDATRARPFHLSCQNRVIG---KWS 267
            G+ +CAVAS+ LMG LD T    ++E +  WC+KRQ  GFQGR NK +DTC SFWVGATL LL  +  VD +  R F LS Q+  +G   KW+
Sbjct:  225 GTTFCAVASLVLMGRLDSTFNKRQQERIKSWCIKRQHSGFQGRPNKPVDTCYSFWVGATLKLLNAYEFVDFSCNRGFILSTQDDTVGGFAKWT 317
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BLAST of mRNA_H-paniculata_contig59598.13602.1 vs. uniprot
Match: A0A7J7KDD4_BUGNE (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KDD4_BUGNE)

HSP 1 Score: 97.1 bits (240), Expect = 1.120e-21
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    1 GSAYCAVASMELMGTLDTLPSNRREGLLEWCVKRQECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDATRARPFHLSCQNRVIG---KWS 267
            GS +CAVA++ L   LD+L       L +WC+KRQE GFQGR NK IDTC SFW+GATL +L  F  VD +  R + LS Q+ V+G   KW+
Sbjct:  209 GSTFCAVAALYLFNRLDSLKPVELSLLKQWCLKRQESGFQGRPNKPIDTCYSFWIGATLRILDSFQFVDTSANRKWLLSVQDNVVGGFGKWT 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59598.13602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Q8_ECTSI1.530e-3261.96Geranylgeranyltransferase type 1 beta n=1 Tax=Ecto... [more]
A0A8K0P2M1_LADFU5.640e-2454.44Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A6B2L8R2_9EUKA6.440e-2454.74Geranylgeranyl transferase type-1 subunit beta n=1... [more]
UPI0014257D885.940e-2352.69geranylgeranyl transferase type-1 subunit beta-lik... [more]
A0A6P9AFI5_THRPL7.590e-2350.00Geranylgeranyl transferase type-1 subunit beta n=1... [more]
UPI001ED88C983.080e-2252.22geranylgeranyl transferase type-1 subunit beta n=1... [more]
A0A6J1SPJ8_FRAOC4.000e-2250.54Geranylgeranyl transferase type-1 subunit beta n=1... [more]
A0A7J6ZVP8_9COLE5.250e-2252.81Geranylgeranyl transferase type-1 subunit beta n=1... [more]
UPI0014555ED79.700e-2251.61geranylgeranyl transferase type-1 subunit beta-lik... [more]
A0A7J7KDD4_BUGNE1.120e-2151.09Geranylgeranyl transferase type-1 subunit beta n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59598contigH-paniculata_contig59598:131..842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue5.1e-22
Seed eggNOG ortholog2880.D7G4Q8
Preferred namePGGT1B
KEGG koko:K11713
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004662,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005953,GO:0005968,GO:0006464,GO:0006807,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0007154,GO:0007163,GO:0007165,GO:0007264,GO:0007275,GO:0007507,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008284,GO:0008318,GO:0009414,GO:0009415,GO:0009555,GO:0009628,GO:0009719,GO:0009725,GO:0009733,GO:0009737,GO:0009787,GO:0009788,GO:0009790,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010556,GO:0010558,GO:0010605,GO:0010646,GO:0010648,GO:0016740,GO:0016765,GO:0018342,GO:0018344,GO:0019222,GO:0019538,GO:0019725,GO:0022622,GO:0023051,GO:0023052,GO:0023057,GO:0030003,GO:0030010,GO:0032501,GO:0032502,GO:0032507,GO:0032991,GO:0033036,GO:0033993,GO:0034097,GO:0034613,GO:0035050,GO:0035295,GO:0035556,GO:0036211,GO:0042127,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045185,GO:0045787,GO:0046872,GO:0046914,GO:0048229,GO:0048364,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051235,GO:0051641,GO:0051651,GO:0051716,GO:0051726,GO:0051769,GO:0051771,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060255,GO:0060429,GO:0065007,GO:0065008,GO:0070727,GO:0071704,GO:0072359,GO:0072503,GO:0072507,GO:0072657,GO:0072658,GO:0072659,GO:0072660,GO:0097305,GO:0097354,GO:0098771,GO:0099402,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990234,GO:1990778
EggNOG free text desc.Prenyltransferase
EggNOG OGsCOG5029@1,KOG0367@2759
EC2.5.1.59
COG Functional cat.O
BiGG ReactioniND750.YGL155W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01006
Exons2
Model size288
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59598.13602.1prot_H-paniculata_contig59598.13602.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59598 158..842 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930655.8847077-UTR-H-paniculata_contig59598:130..1571622930655.8847077-UTR-H-paniculata_contig59598:130..157Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59598 131..157 +
1691481391.902283-UTR-H-paniculata_contig59598:130..1571691481391.902283-UTR-H-paniculata_contig59598:130..157Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59598 131..157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930655.9219944-CDS-H-paniculata_contig59598:157..2351622930655.9219944-CDS-H-paniculata_contig59598:157..235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59598 158..235 +
1691481391.9120917-CDS-H-paniculata_contig59598:157..2351691481391.9120917-CDS-H-paniculata_contig59598:157..235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59598 158..235 +
1622930655.951832-CDS-H-paniculata_contig59598:659..8421622930655.951832-CDS-H-paniculata_contig59598:659..842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59598 660..842 +
1691481391.9233863-CDS-H-paniculata_contig59598:659..8421691481391.9233863-CDS-H-paniculata_contig59598:659..842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59598 660..842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59598.13602.1

>prot_H-paniculata_contig59598.13602.1 ID=prot_H-paniculata_contig59598.13602.1|Name=mRNA_H-paniculata_contig59598.13602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MELMGTLDTLPSNRREGLLEWCVKRQECGFQGRVNKAIDTCCSFWVGATL
ILLGEFHLVDATRARPFHLSCQNRVIGKWSCQPARCT
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mRNA from alignment at H-paniculata_contig59598:131..842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59598.13602.1 ID=mRNA_H-paniculata_contig59598.13602.1|Name=mRNA_H-paniculata_contig59598.13602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=712bp|location=Sequence derived from alignment at H-paniculata_contig59598:131..842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATCGGCATACTGCGCGGTAGCTTCAATGGAGCTCATGGGCACCCTTGA
CACACTTCCATCGAATCGACGAGAAGGCCTTTTAGAATGGTGTGTTAAGC
GACAGGTGGGCACCATGTCAGTAGACTTTGCTCGCTTATGTTGGTGTTGG
CGGCTCGAATGATGTGTATCTAGAGAGATGTCTTGGGTACGACGTAATAG
CATTTTGATGGAGTGATGTTGATCGATCGATGCAACGTCTGCAGTGTGTG
GAGGTCAGGTCTACGTTGTGCGGTGAGTGTATAACGGGAGGCATTTGATT
CGTCTATCGAAGTGGACACCGTTTTCGACACAGCAGCGCGTACAGACGCA
AGTAGGGTAGGGAAGCATGTAGATTTTCGTTCAGTGTTGAAAATCGTACA
AGTACACACCCCGAGCACATTTACACACACCACCAATGTTGACTGCAGAT
GTTGAGCGGGACAAGCCACTATCCGGCGCTTTTGGTTCTCCGTTTCACCG
CCGCCTGTCGTTGTGCTGCCTGGCCGCAGGAGTGTGGTTTCCAAGGCCGC
GTCAACAAGGCAATCGACACATGTTGTTCGTTTTGGGTTGGCGCGACGTT
GATTTTGCTGGGAGAATTTCACCTGGTGGATGCAACGAGAGCCCGCCCGT
TCCACCTCTCTTGCCAAAATAGGGTCATCGGTAAGTGGTCGTGCCAACCC
GCTCGCTGCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig59598:131..842+

>mRNA_H-paniculata_contig59598.13602.1 ID=mRNA_H-paniculata_contig59598.13602.1|Name=mRNA_H-paniculata_contig59598.13602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig59598:131..842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCTCATGGGCACCCTTGACACACTTCCATCGAATCGACGAGAAGG
CCTTTTAGAATGGTGTGTTAAGCGACAGATGGAGCTCATGGGCACCCTTG
ACACACTTCCATCGAATCGACGAGAAGGCCTTTTAGAATGGTGTGTTAAG
CGACAGGAGTGTGGTTTCCAAGGCCGCGTCAACAAGGCAATCGACACATG
TTGTTCGTTTTGGGTTGGCGCGACGTTGATTTTGCTGGGAGAATTTCACC
TGGTGGATGCAACGAGAGCCCGCCCGTTCCACCTCTCTTGCCAAAATAGG
GTCATCGGTAAGTGGTCGTGCCAACCCGCTCGCTGCACCGAGTGTGGTTT
CCAAGGCCGCGTCAACAAGGCAATCGACACATGTTGTTCGTTTTGGGTTG
GCGCGACGTTGATTTTGCTGGGAGAATTTCACCTGGTGGATGCAACGAGA
GCCCGCCCGTTCCACCTCTCTTGCCAAAATAGGGTCATCGGTAAGTGGTC
GTGCCAACCCGCTCGCTGCACC
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