mRNA_H-paniculata_contig5956.13600.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5956.13600.1
Unique NamemRNA_H-paniculata_contig5956.13600.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5956.13600.1 vs. uniprot
Match: D7FP36_ECTSI (Cu2_monoox_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP36_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.580e-49
Identity = 90/211 (42.65%), Postives = 128/211 (60.66%), Query Frame = 1 
Query:    1 GLLQIGDPLVALGDPTYGLTMLPDGKSMYSFLCPSSCSDQHFKNESVTIIGHSLYMHGTGQHMLVQQFR-----NDVVVDTVKVEYFSIDQGGVFASMTDGTKTIERGDRFETRCYYDTAYGEYPGERVRFGPRSEDEM*VVVIIVCRVDSCRCIDFIYYYPAQPIPHG-YCGVESCDGTITNVVKLEEDSTFDRTYGIVQTSCTEALEED 615
            G++++GDP VAL   T     LPDGKS +SF CPS+C++ HF+ E VT+  H L+MH  GQ ML +Q+R     N+V++ T  VEY+S  Q G      + + TI++GD F T C+YDT+Y       V FG  SE+EM              CID++ YYP Q +P+G  CG+ +CDG+I +  +LEEDS F+RT+G+V T  + A  E+
Sbjct:    2 GVIKLGDPYVALESQT-----LPDGKSTFSFGCPSTCTETHFEEEEVTVFSHLLHMHENGQRMLTRQYRTDSDGNEVLLHTADVEYYSFLQAGAHVVSVNDSTTIKKGDVFTTECFYDTSYSSVDSSNVTFGLGSENEM--------------CIDYVLYYPDQRLPNGGACGLLACDGSILSYSELEEDSDFNRTFGVVDTCTSSANGEE 193
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BLAST of mRNA_H-paniculata_contig5956.13600.1 vs. uniprot
Match: D8LD47_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD47_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 9.580e-43
Identity = 89/206 (43.20%), Postives = 124/206 (60.19%), Query Frame = 1 
Query:   25 LVALGDPTYGL--TMLPDGKSMYSFLCPSSCSDQHFKNESVTIIGHSLYMHGTGQHMLVQQFRNDV-----VVDTVKVEYFSIDQGGVFASMTDGTKTIERGDRFETRCYYDTAYGEYPGERVRFGPRSEDEM*VVVIIVCRVDSCRCIDFIYYYPAQPIPHG-YCG-VESCDGTITNVVKLEEDSTFDRTYGIVQTSCTEALEED 615
            ++ LGDP+  L  T LP+GKS   F CP +C++ +F+ ESVT+  H L+MH  GQ M  +Q+RND      +VD  +VEY+S  Q G   +  +G+  I++GDRFET CYYDT+        V FG  SE EM              C+DF++YYPAQ IP G YCG +E C G+   + +L +++ F+RT+GIV  SCT  L+ED
Sbjct:  385 VITLGDPSVDLIGTKLPEGKSSVEFDCPGACTETYFEAESVTVYSHFLHMHENGQRMETRQYRNDSDGNEQLVDATEVEYYSFLQAGGHVTAHNGSDIIQKGDRFETTCYYDTSLSSVDSTNVTFGEGSEQEM--------------CMDFLFYYPAQIIPDGGYCGGLERCGGSFLGITELGDETDFNRTFGIVD-SCTGTLDED 575
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BLAST of mRNA_H-paniculata_contig5956.13600.1 vs. uniprot
Match: D7FP38_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP38_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 2.740e-41
Identity = 86/207 (41.55%), Postives = 122/207 (58.94%), Query Frame = 1 
Query:    1 GLLQIGDPLVALGDPTYGLTMLPDGKSMYSFLCPSSCSDQHFKNESVTIIGHSLYMHGTGQHMLVQQFRND-----VVVDTVKVEYFSIDQGGVFASMTDGTKTIERGDRFETRCYYDTAYGEYPGERVRFGPRSEDEM*VVVIIVCRVDSCRCIDFIYYYPAQPIP-HGYCGVESCDGTITNVVKLEEDSTFDRTYGIVQTSCTEA 603
            GL+++GDP  AL         LPDGKS+YSF CP +C++ +F+ E VT+  H L+MH  GQ +  +Q+RND     V++ T +VEY+S  Q GV     + + TI++GD F T CYYDT+Y       V +G  SE+EM              CIDF++YYP Q +P  G CG   C+GT+    +LE+ S F+RT+G+V T CT +
Sbjct:  375 GLVKLGDPQGALHPQP-----LPDGKSVYSFGCPGTCTETYFEEEEVTVFSHLLHMHENGQRISTRQYRNDGDGNEVLIHTAEVEYYSFLQAGVHVVTVNDSTTIKKGDVFTTECYYDTSYSSVGSPNVTWGLGSENEM--------------CIDFVFYYPDQKLPDRGACGSNLCNGTLLGYSELEDVSDFNRTFGVVDT-CTSS 561
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BLAST of mRNA_H-paniculata_contig5956.13600.1 vs. uniprot
Match: A0A6H5K5A3_9PHAE (Cu2_monoox_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A3_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 8.860e-33
Identity = 90/273 (32.97%), Postives = 132/273 (48.35%), Query Frame = 1 
Query:    1 GLLQIGDPLVALGDPTYGLT--MLPDGKSMYSFLCPSSCSDQHFKNESVTIIGHSLYMHGTGQHMLVQQFR-----NDVVVDTVKVEYFSIDQGGVFASMTDGTKTIE------------------------RGDRFETRCYYDTAYGEYPGERVRFGPRSE-------DEM*VVVI---------------------IVCRVDSCR-------CIDFIYYYPAQPIPHG-YCG-VESCDGTITNVVKLEEDSTFDRTYGIVQTSCTEALEED 615
            G+ ++   ++ LGDP   LT   LP+GKS   F CP  C++ + + ESVT+  H L+MHG GQ M  +Q+R     N+ +VD  +VEY+S  Q G   +  +G+  I+                        +GD FET CYYDT+        V FG  SE       DE  +V +                     +V  VD+ +       C+DF++YYPAQ I  G YCG +E C G+   +  LE+++  +RT+GIV  SCT  ++ED
Sbjct:   59 GIREMDMGVITLGDPNVDLTGTKLPEGKSSVEFDCPGVCTETYLEAESVTVYSHFLHMHGNGQRMETRQYRSDSDGNEQLVDATEVEYYSFLQAGGHVTAHNGSDIIQYIHYLLPPNAFVLPCLAFVSVFLQKGDSFETTCYYDTSLSSVDSTNVTFGEGSEEGMGKIDDETALVRLKAYHTNEQNSETVYVRAGSFSVVTVVDADKNDTHTHVCMDFLFYYPAQIIRDGGYCGGLERCGGSFLGITDLEDETDLNRTFGIVD-SCTGTIDED 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5956.13600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FP36_ECTSI1.580e-4942.65Cu2_monoox_C domain-containing protein n=1 Tax=Ect... [more]
D8LD47_ECTSI9.580e-4343.20DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FP38_ECTSI2.740e-4141.55DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5K5A3_9PHAE8.860e-3332.97Cu2_monoox_C domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5956contigH-paniculata_contig5956:1804..4245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue9.4e-24
Seed eggNOG ortholog2880.D7FP36
Hectar predicted targeting categoryother localisation
EggNOG free text desc.octopamine biosynthetic process
EggNOG OGsKOG3568@1,KOG3568@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size980
Cds size345
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930655.5196412-UTR-H-paniculata_contig5956:1803..21711622930655.5196412-UTR-H-paniculata_contig5956:1803..2171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5956 1804..2171 -
1691481391.8282938-UTR-H-paniculata_contig5956:1803..21711691481391.8282938-UTR-H-paniculata_contig5956:1803..2171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5956 1804..2171 -
1622930655.5328784-UTR-H-paniculata_contig5956:2677..28761622930655.5328784-UTR-H-paniculata_contig5956:2677..2876Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5956 2678..2876 -
1691481391.8379812-UTR-H-paniculata_contig5956:2677..28761691481391.8379812-UTR-H-paniculata_contig5956:2677..2876Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5956 2678..2876 -
1622930655.547058-UTR-H-paniculata_contig5956:3199..32071622930655.547058-UTR-H-paniculata_contig5956:3199..3207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5956 3200..3207 -
1691481391.8458402-UTR-H-paniculata_contig5956:3199..32071691481391.8458402-UTR-H-paniculata_contig5956:3199..3207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5956 3200..3207 -
1622930655.6202807-UTR-H-paniculata_contig5956:4185..42451622930655.6202807-UTR-H-paniculata_contig5956:4185..4245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5956 4186..4245 -
1691481391.883215-UTR-H-paniculata_contig5956:4185..42451691481391.883215-UTR-H-paniculata_contig5956:4185..4245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5956 4186..4245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930655.5671887-CDS-H-paniculata_contig5956:3207..33091622930655.5671887-CDS-H-paniculata_contig5956:3207..3309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5956 3208..3309 -
1691481391.8542066-CDS-H-paniculata_contig5956:3207..33091691481391.8542066-CDS-H-paniculata_contig5956:3207..3309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5956 3208..3309 -
1622930655.5849066-CDS-H-paniculata_contig5956:3644..38181622930655.5849066-CDS-H-paniculata_contig5956:3644..3818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5956 3645..3818 -
1691481391.862424-CDS-H-paniculata_contig5956:3644..38181691481391.862424-CDS-H-paniculata_contig5956:3644..3818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5956 3645..3818 -
1622930655.5990481-CDS-H-paniculata_contig5956:4116..41851622930655.5990481-CDS-H-paniculata_contig5956:4116..4185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5956 4117..4185 -
1691481391.874679-CDS-H-paniculata_contig5956:4116..41851691481391.874679-CDS-H-paniculata_contig5956:4116..4185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5956 4117..4185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5956.13600.1prot_H-paniculata_contig5956.13600.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5956 3208..4185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5956.13600.1

>prot_H-paniculata_contig5956.13600.1 ID=prot_H-paniculata_contig5956.13600.1|Name=mRNA_H-paniculata_contig5956.13600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MLPDGKSMYSFLCPSSCSDQHFKNESVTIIGHSLYMHGTGQHMLVQQFRN
DVVVDTVKVEYFSIDQGGVFASMTDGTKTIERGDRFETRCYYDTAYGEYP
GERVRFGPRSEDEM*
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mRNA from alignment at H-paniculata_contig5956:1804..4245-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5956.13600.1 ID=mRNA_H-paniculata_contig5956.13600.1|Name=mRNA_H-paniculata_contig5956.13600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2442bp|location=Sequence derived from alignment at H-paniculata_contig5956:1804..4245- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCCTTCTTCAGATTGGTGATCCGTTGGTGGCGTTGGGCGACCCAACTTA
CGGGCTGACTATGCTACCGGACGGCAAGAGTATGTACTCCTTTTTGTGTC
CGTCGTCGTGCTCCGATCAGCATTTCAAGGTAAGCTGCGTCATGAATTTA
TCAGATCATAAATTTTTCTGTGGATGTATCTTCGAGGTCGCTCGATCCCA
GGTAAACCTGTGCTGTGAGTATTTTGGTGCCTTCCTGATCTACGCAAGGT
TGACACACCCGTCCAGTTCGCTCTTCCATCGTGTGGTTTGCCCCGTAATT
CACCAGCGGAATGGTGGTGAACCCAGTAAAGACATGCTCGTTAAGAGAGG
CGTGTTGAATTGTCTTTCCGGTAGCAATCTTTTCCTTTTCTCCATACTGT
ATCTCCCGACGTCTGCGCCCACTGCAGAATGAGAGCGTTACGATAATCGG
CCACTCCTTGTACATGCACGGCACGGGACAACACATGCTCGTGCAGCAAT
TTCGCAACGATGTCGTGGTAGACACGGTGAAAGTTGAGTACTTCTCCATT
GACCAAGGTGGCGTTTTCGCTTCCATGACCGATGGGACCAAGACGATTGA
GGTGTGTACTAGGCGATGATCGACGAGTTTTGTATACAGTATATAAACCC
CCACACCATGCGCTGTTACAACAATTTTTATTCTTGACGTATCTACGTGA
CCAGGTGAAAGACAAGAATTTATCATTTGTCCGTTGTCGTGTGCTTTGGT
TGACCAGAGATACGGCGCTGAAATTCTTAGCGAGCGTCACTTGTAGGCTC
GTTGTTCCATGATCGTTGCTTGTTGTCTGAGCCATATTTTATACATGAAC
ACATACTAGAAATTACAATCAATTGTGCAAGCCTCACGCTCCTCGTGAAT
GATTTGAAACATTGACTTCATGCTGATTTTCTCCAGAGAGGAGACAGGTT
TGAGACGCGTTGCTACTACGATACGGCCTACGGCGAATATCCTGGCGAGA
GAGTGCGCTTCGGGCCACGATCTGAAGACGAAATGTAAGTTGTTGTCAAG
CGTTCGCCTAGGTTCCCACACTCATTTTCCACTAATGCTCAGCAACGCTG
TGAGCACAAATGTAGTATGTTGCATTTATATCGTGGCGTCGCGGAGGAAG
CTGCCACAGTACAGTGTACACGGGTCTGTGCGGCTCGGAGACAGGTACAT
TGTGCGCAGTGGTTTTCTATACCCTCGATGGACTCCACACTTGGAGAAAC
TGTTTTCTGAAGACTGCCTTTGGAGCATATTAATTCAGTGCAATATAGCC
GGACGGCATCTGAAGCGCGCTTTCAATGAGCCAAACAAGCAAAGACTATC
CTCGGAACCAACGTTTGAATATCATCGTGTGTCGTGTCGACTCTTGCAGG
TGCATCGACTTTATCTACTACTATCCTGCACAACCGATTCCCCATGGATA
TTGTGGGGTTGAATCCTGCGATGGTACGATCACGAACGTCGTCAAGTTGG
AAGAAGATTCCACCTTCGATCGAACTTACGGGATTGTGCAAACTTCTTGC
ACGGAGGCGTTAGAAGAGGTAGGTTTACAGCTCTATGATATATATATATA
TATACATAAAATTATATCTTCGTTTCCTATTGTTTCTGTATGTGTCGTAT
CTTCCCACTAGCTACTGTATGTGCTAGTGCTTCTCACTGCTGTCTCATTG
GTATGGGTACACTGTATTGAACATCGACAATATTGTGCGCTGCGCCTCAG
AAGGGATATATCAACTAGTTCTTTATTCCATATTTCAGTGGCCATTACTC
GAAAAATATAGATAATTCATTTTAAATCTTGCCGAATGTCTAATGATCCC
CAAAACAGAGGCATGTACACATACCAGTATTAGTAGAAACGAGTCGTCGG
GATTTGGTTCGTTCGGATATCTTCAGGAAGCGACGAAGATGTCAGCAATA
CACGTGAGAAATATAGGCATGCCAATTATGTATAGAGGGTATACCGGCAT
CGACGTGCTGAAAAAATGCTGTCACCACTGTTTCGACACCCTTCGGCTGT
TCTCATTGGGAAAAAATGTGACAGGATGATGACGTTGTTTCCTCTTCATC
GAGGACGTTCTTCACTGGATACGCACCAGTGGTCTGCGCGGCGACAGCAT
CTCTACTCCTGATTCTGATGTAGTGCGTTCCTTGCATGTTGCGACGGTGT
ACGGGCGTGAAAGTTTTACGATGCGATGCTCGTTGTCTCGTTCTACCGCC
AGTTAATGGTTATGTCAGCTATGATCCGGATGATGACCCAAAGACGACAG
TGGCACTAATCATGAGATCGATTGTATTTCCGCGGTTTCTGCGGGTATGG
TAGCCGTCGTTGATTGTGATGAAGTTGCAACAAAGGCGGTCACCTGGTTT
TGCTCACTACTGTACTGTAATACGATGTCTTGCTTGTAAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig5956:1804..4245-

>mRNA_H-paniculata_contig5956.13600.1 ID=mRNA_H-paniculata_contig5956.13600.1|Name=mRNA_H-paniculata_contig5956.13600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig5956:1804..4245- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACCGGACGGCAAGAGTATGTACTCCTTTTTGTGTCCGTCGTCGTG
CTCCGATCAGCATTTCAAGATGCTACCGGACGGCAAGAGTATGTACTCCT
TTTTGTGTCCGTCGTCGTGCTCCGATCAGCATTTCAAGAATGAGAGCGTT
ACGATAATCGGCCACTCCTTGTACATGCACGGCACGGGACAACACATGCT
CGTGCAGCAATTTCGCAACGATGTCGTGGTAGACACGGTGAAAGTTGAGT
ACTTCTCCATTGACCAAGGTGGCGTTTTCGCTTCCATGACCGATGGGACC
AAGACGATTGAGAATGAGAGCGTTACGATAATCGGCCACTCCTTGTACAT
GCACGGCACGGGACAACACATGCTCGTGCAGCAATTTCGCAACGATGTCG
TGGTAGACACGGTGAAAGTTGAGTACTTCTCCATTGACCAAGGTGGCGTT
TTCGCTTCCATGACCGATGGGACCAAGACGATTGAGAGAGGAGACAGGTT
TGAGACGCGTTGCTACTACGATACGGCCTACGGCGAATATCCTGGCGAGA
GAGTGCGCTTCGGGCCACGATCTGAAGACGAAATGTAAAGAGGAGACAGG
TTTGAGACGCGTTGCTACTACGATACGGCCTACGGCGAATATCCTGGCGA
GAGAGTGCGCTTCGGGCCACGATCTGAAGACGAAATGTAA
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