prot_H-paniculata_contig59552.13599.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig59552.13599.1
Unique Nameprot_H-paniculata_contig59552.13599.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length38
Homology
BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A1I9LVN1_9PHAE (50S ribosomal protein L36, chloroplastic n=54 Tax=Stramenopiles TaxID=33634 RepID=A0A1I9LVN1_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.480e-18
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 0
Query:    1 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 37
            MKVRPSVKKMCEKCR+IRRHGRVQV+CSNLKHKQRQG
Sbjct:    1 MKVRPSVKKMCEKCRIIRRHGRVQVMCSNLKHKQRQG 37          
BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A8F0JXU2_9PHAE (Ribosomal protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXU2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.250e-17
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0
Query:    1 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 37
            MKVRPS+KKMC+KCRVIRRHGRVQ+IC NLKHKQRQG
Sbjct:    1 MKVRPSIKKMCDKCRVIRRHGRVQIICINLKHKQRQG 37          
BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A8F0F9V3_9PHAE (Ribosomal protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9V3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.510e-16
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0
Query:    1 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 37
            MKVRPSVKKMCEKCRVIRR GRVQVIC NLKHKQRQG
Sbjct:    1 MKVRPSVKKMCEKCRVIRRRGRVQVICINLKHKQRQG 37          
BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A8E5XRN8_9PHAE (50S ribosomal protein L36, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRN8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.050e-16
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 0
Query:    1 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 37
            MKVRPS+KK+CEKCRVIRRHGRVQ+IC+N KHKQRQG
Sbjct:    1 MKVRPSIKKICEKCRVIRRHGRVQIICTNPKHKQRQG 37          
BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: D1GJR4_FUCVE (50S ribosomal protein L36, chloroplastic n=1 Tax=Fucus vesiculosus TaxID=49266 RepID=D1GJR4_FUCVE)

HSP 1 Score: 70.9 bits (172), Expect = 1.250e-15
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 0
Query:    1 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 37
            MKV PSVKK+CE CR+IRRHGRVQVIC+NLKHKQRQG
Sbjct:    1 MKVGPSVKKICENCRIIRRHGRVQVICTNLKHKQRQG 37          
BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A537ZFP6_9ACTN (50S ribosomal protein L36 n=7 Tax=root TaxID=1 RepID=A0A537ZFP6_9ACTN)

HSP 1 Score: 70.9 bits (172), Expect = 1.250e-15
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 0
Query:    1 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 37
            MKVRPSVKKMCEKC+VIRRHGRV+VIC+N +HKQRQG
Sbjct:    1 MKVRPSVKKMCEKCKVIRRHGRVRVICTNPRHKQRQG 37          
BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A0T0MIE1_9CELL (50S ribosomal protein L36 n=33 Tax=Actinomycetia TaxID=1760 RepID=A0A0T0MIE1_9CELL)

HSP 1 Score: 70.9 bits (172), Expect = 1.250e-15
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 0
Query:    1 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 37
            MKV+PSVKK+C+KC+VIRRHGRVQVIC NL+HKQRQG
Sbjct:    1 MKVKPSVKKICDKCKVIRRHGRVQVICENLRHKQRQG 37          
BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A2W4K2K1_9PSEU (50S ribosomal protein L36 n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A2W4K2K1_9PSEU)

HSP 1 Score: 70.9 bits (172), Expect = 1.250e-15
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 0
Query:    1 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 37
            MKVRPSVKK+C+KCRVIRRHGR+ VIC NL+HKQRQG
Sbjct:    1 MKVRPSVKKICDKCRVIRRHGRIMVICENLRHKQRQG 37          
BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A1C9CEM5_9RHOD (Ribosomal protein n=1 Tax=Erythrotrichia carnea TaxID=35151 RepID=A0A1C9CEM5_9RHOD)

HSP 1 Score: 70.5 bits (171), Expect = 1.770e-15
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 0
Query:    1 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 37
            MKVRPSV+KMCEKCRVIRRHG+V++IC+N KHKQRQG
Sbjct:    1 MKVRPSVRKMCEKCRVIRRHGKVRIICTNPKHKQRQG 37          
BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A7W1CKI0_9ACTN (50S ribosomal protein L36 n=3 Tax=Acidimicrobiia TaxID=84992 RepID=A0A7W1CKI0_9ACTN)

HSP 1 Score: 70.5 bits (171), Expect = 1.770e-15
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 0
Query:    1 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 37
            MKVRPSVKKMCEKC+VIRRHGRV+VIC N +HKQRQG
Sbjct:    1 MKVRPSVKKMCEKCKVIRRHGRVRVICENPRHKQRQG 37          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I9LVN1_9PHAE4.480e-1894.5950S ribosomal protein L36, chloroplastic n=54 Tax=... [more]
A0A8F0JXU2_9PHAE5.250e-1789.19Ribosomal protein n=1 Tax=Protohalopteris sp. TaxI... [more]
A0A8F0F9V3_9PHAE1.510e-1694.59Ribosomal protein n=1 Tax=Chorda asiatica TaxID=12... [more]
A0A8E5XRN8_9PHAE3.050e-1686.4950S ribosomal protein L36, chloroplastic n=1 Tax=I... [more]
D1GJR4_FUCVE1.250e-1586.4950S ribosomal protein L36, chloroplastic n=1 Tax=F... [more]
A0A537ZFP6_9ACTN1.250e-1586.4950S ribosomal protein L36 n=7 Tax=root TaxID=1 Rep... [more]
A0A0T0MIE1_9CELL1.250e-1583.7850S ribosomal protein L36 n=33 Tax=Actinomycetia T... [more]
A0A2W4K2K1_9PSEU1.250e-1583.7850S ribosomal protein L36 n=2 Tax=Actinobacteria T... [more]
A0A1C9CEM5_9RHOD1.770e-1583.78Ribosomal protein n=1 Tax=Erythrotrichia carnea Ta... [more]
A0A7W1CKI0_9ACTN1.770e-1586.4950S ribosomal protein L36 n=3 Tax=Acidimicrobiia T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000473Ribosomal protein L36PFAMPF00444Ribosomal_L36coord: 1..37
e-value: 4.3E-18
score: 65.2
IPR000473Ribosomal protein L36TIGRFAMTIGR01022TIGR01022coord: 1..37
e-value: 1.5E-21
score: 74.2
IPR000473Ribosomal protein L36PROSITEPS00828RIBOSOMAL_L36coord: 11..36
IPR000473Ribosomal protein L36HAMAPMF_00251Ribosomal_L36coord: 1..37
score: 17.047
NoneNo IPR availablePANTHERPTHR18804FAMILY NOT NAMEDcoord: 1..37
NoneNo IPR availablePANTHERPTHR18804:SF14coord: 1..37
NoneNo IPR availablePRODOMPD002101coord: 9..37
e-value: 2.0E-7
score: 126.0
IPR035977Ribosomal protein L36 superfamilySUPERFAMILY57840Ribosomal protein L36coord: 1..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59552contigH-paniculata_contig59552:670..783 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59552.13599.1mRNA_H-paniculata_contig59552.13599.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig59552 670..792 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig59552.13599.1 ID=prot_H-paniculata_contig59552.13599.1|Name=mRNA_H-paniculata_contig59552.13599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000473Ribosomal_L36
IPR035977Ribosomal_L36_sp