mRNA_H-paniculata_contig59552.13599.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59552.13599.1
Unique NamemRNA_H-paniculata_contig59552.13599.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A1I9LVN1_9PHAE (50S ribosomal protein L36, chloroplastic n=54 Tax=Stramenopiles TaxID=33634 RepID=A0A1I9LVN1_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.270e-18
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:   10 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 120
            MKVRPSVKKMCEKCR+IRRHGRVQV+CSNLKHKQRQG
Sbjct:    1 MKVRPSVKKMCEKCRIIRRHGRVQVMCSNLKHKQRQG 37
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BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A8F0JXU2_9PHAE (Ribosomal protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXU2_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 8.530e-17
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   10 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 120
            MKVRPS+KKMC+KCRVIRRHGRVQ+IC NLKHKQRQG
Sbjct:    1 MKVRPSIKKMCDKCRVIRRHGRVQIICINLKHKQRQG 37
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BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A8F0F9V3_9PHAE (Ribosomal protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9V3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.450e-16
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:   10 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 120
            MKVRPSVKKMCEKCRVIRR GRVQVIC NLKHKQRQG
Sbjct:    1 MKVRPSVKKMCEKCRVIRRRGRVQVICINLKHKQRQG 37
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BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A8E5XRN8_9PHAE (50S ribosomal protein L36, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRN8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.950e-16
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   10 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 120
            MKVRPS+KK+CEKCRVIRRHGRVQ+IC+N KHKQRQG
Sbjct:    1 MKVRPSIKKICEKCRVIRRHGRVQIICTNPKHKQRQG 37
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BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A1Z1XB63_9RHOD (50S ribosomal protein L36, chloroplastic n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A1Z1XB63_9RHOD)

HSP 1 Score: 72.0 bits (175), Expect = 7.780e-16
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    7 NMKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 120
            NMKVRPSVKKMCEKCR+IRRHG+V++IC N KHKQRQG
Sbjct:   21 NMKVRPSVKKMCEKCRIIRRHGKVRIICLNPKHKQRQG 58
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BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: D1GJR4_FUCVE (50S ribosomal protein L36, chloroplastic n=1 Tax=Fucus vesiculosus TaxID=49266 RepID=D1GJR4_FUCVE)

HSP 1 Score: 70.5 bits (171), Expect = 2.020e-15
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:   10 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 120
            MKV PSVKK+CE CR+IRRHGRVQVIC+NLKHKQRQG
Sbjct:    1 MKVGPSVKKICENCRIIRRHGRVQVICTNLKHKQRQG 37
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BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A537ZFP6_9ACTN (50S ribosomal protein L36 n=7 Tax=root TaxID=1 RepID=A0A537ZFP6_9ACTN)

HSP 1 Score: 70.5 bits (171), Expect = 2.020e-15
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   10 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 120
            MKVRPSVKKMCEKC+VIRRHGRV+VIC+N +HKQRQG
Sbjct:    1 MKVRPSVKKMCEKCKVIRRHGRVRVICTNPRHKQRQG 37
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BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A0T0MIE1_9CELL (50S ribosomal protein L36 n=33 Tax=Actinomycetia TaxID=1760 RepID=A0A0T0MIE1_9CELL)

HSP 1 Score: 70.5 bits (171), Expect = 2.020e-15
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   10 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 120
            MKV+PSVKK+C+KC+VIRRHGRVQVIC NL+HKQRQG
Sbjct:    1 MKVKPSVKKICDKCKVIRRHGRVQVICENLRHKQRQG 37
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BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A2W4K2K1_9PSEU (50S ribosomal protein L36 n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A2W4K2K1_9PSEU)

HSP 1 Score: 70.5 bits (171), Expect = 2.020e-15
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:   10 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 120
            MKVRPSVKK+C+KCRVIRRHGR+ VIC NL+HKQRQG
Sbjct:    1 MKVRPSVKKICDKCRVIRRHGRIMVICENLRHKQRQG 37
[Close]
BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Match: A0A1C9CEM5_9RHOD (Ribosomal protein n=1 Tax=Erythrotrichia carnea TaxID=35151 RepID=A0A1C9CEM5_9RHOD)

HSP 1 Score: 70.1 bits (170), Expect = 2.870e-15
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   10 MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG 120
            MKVRPSV+KMCEKCRVIRRHG+V++IC+N KHKQRQG
Sbjct:    1 MKVRPSVRKMCEKCRVIRRHGKVRIICTNPKHKQRQG 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59552.13599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I9LVN1_9PHAE7.270e-1894.5950S ribosomal protein L36, chloroplastic n=54 Tax=... [more]
A0A8F0JXU2_9PHAE8.530e-1789.19Ribosomal protein n=1 Tax=Protohalopteris sp. TaxI... [more]
A0A8F0F9V3_9PHAE2.450e-1694.59Ribosomal protein n=1 Tax=Chorda asiatica TaxID=12... [more]
A0A8E5XRN8_9PHAE4.950e-1686.4950S ribosomal protein L36, chloroplastic n=1 Tax=I... [more]
A0A1Z1XB63_9RHOD7.780e-1684.2150S ribosomal protein L36, chloroplastic n=1 Tax=C... [more]
D1GJR4_FUCVE2.020e-1586.4950S ribosomal protein L36, chloroplastic n=1 Tax=F... [more]
A0A537ZFP6_9ACTN2.020e-1586.4950S ribosomal protein L36 n=7 Tax=root TaxID=1 Rep... [more]
A0A0T0MIE1_9CELL2.020e-1583.7850S ribosomal protein L36 n=33 Tax=Actinomycetia T... [more]
A0A2W4K2K1_9PSEU2.020e-1583.7850S ribosomal protein L36 n=2 Tax=Actinobacteria T... [more]
A0A1C9CEM5_9RHOD2.870e-1583.78Ribosomal protein n=1 Tax=Erythrotrichia carnea Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59552contigH-paniculata_contig59552:670..792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue5.5e-13
Seed eggNOG ortholog2880.D1J734
Preferred namerpl36
KEGG koko:K02919
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.structural constituent of ribosome
EggNOG OGs2CZUB@1,2SBPU@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size123
Cds size114
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930655.469239-CDS-H-paniculata_contig59552:669..7831622930655.469239-CDS-H-paniculata_contig59552:669..783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59552 670..783 -
1691481391.8103628-CDS-H-paniculata_contig59552:669..7831691481391.8103628-CDS-H-paniculata_contig59552:669..783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59552 670..783 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930655.4845223-UTR-H-paniculata_contig59552:783..7921622930655.4845223-UTR-H-paniculata_contig59552:783..792Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59552 784..792 -
1691481391.81984-UTR-H-paniculata_contig59552:783..7921691481391.81984-UTR-H-paniculata_contig59552:783..792Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59552 784..792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59552.13599.1prot_H-paniculata_contig59552.13599.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59552 670..783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59552.13599.1

>prot_H-paniculata_contig59552.13599.1 ID=prot_H-paniculata_contig59552.13599.1|Name=mRNA_H-paniculata_contig59552.13599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
MKVRPSVKKMCEKCRVIRRHGRVQVICSNLKHKQRQG*
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mRNA from alignment at H-paniculata_contig59552:670..792-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59552.13599.1 ID=mRNA_H-paniculata_contig59552.13599.1|Name=mRNA_H-paniculata_contig59552.13599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig59552:670..792- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTTAAATATGAAAGTTAGACCTTCAGTAAAAAAAATGTGTGAAAAATG
TAGAGTTATAAGACGCCATGGTAGGGTGCAAGTCATTTGTAGCAATCTTA
AACATAAGCAACGACAAGGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig59552:670..792-

>mRNA_H-paniculata_contig59552.13599.1 ID=mRNA_H-paniculata_contig59552.13599.1|Name=mRNA_H-paniculata_contig59552.13599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at H-paniculata_contig59552:670..792- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGTTAGACCTTCAGTAAAAAAAATGTGTGAAAAATGTAGAGTTAT
AAGACGCCATGGTAGGGTGCAAGTCATTTGTAGCAATCTTAAACATAAGC
AACGACAAGGTTAAATGAAAGTTAGACCTTCAGTAAAAAAAATGTGTGAA
AAATGTAGAGTTATAAGACGCCATGGTAGGGTGCAAGTCATTTGTAGCAA
TCTTAAACATAAGCAACGACAAGGTTAA
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