prot_H-paniculata_contig59552.13598.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig59552.13598.1
Unique Nameprot_H-paniculata_contig59552.13598.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length127
Homology
[Close]
BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: D1J733_ECTSI (30S ribosomal protein S13, chloroplastic n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J733_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 7.020e-75
Identity = 119/126 (94.44%), Postives = 125/126 (99.21%), Query Frame = 0 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 126
            MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEIL+KAGL+NVD+EG+RTKDLSDE+ISN+RKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVA KNK
Sbjct:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILEKAGLENVDKEGVRTKDLSDEDISNLRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKNK 126
[Close]
BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A6B7EUU3_9PHAE (30S ribosomal protein S13 n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A6B7EUU3_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 2.010e-74
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 0 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 126
            MVRFLGRDLANNK+IKYALT+IYGIGLSRAKEILDKAGL+NVD EGIRTKDLSDEEISNIRKVLE DYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVA KNK
Sbjct:    1 MVRFLGRDLANNKRIKYALTSIYGIGLSRAKEILDKAGLENVDREGIRTKDLSDEEISNIRKVLETDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKNK 126
[Close]
BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A0R6LUW3_UNDPI (30S ribosomal protein S13, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUW3_UNDPI)

HSP 1 Score: 209 bits (533), Expect = 5.100e-68
Identity = 111/126 (88.10%), Postives = 118/126 (93.65%), Query Frame = 0 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 126
            MVRFLG DLANNKKIKYALT IYGIGLSRA+EILD AGLK  D+ G+RTKDLSDE+ISN+RKVLEK+YQLEADL+RLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTN RTRRGGKKTVA KNK
Sbjct:    1 MVRFLGIDLANNKKIKYALTGIYGIGLSRAEEILDSAGLKAADDAGVRTKDLSDEDISNLRKVLEKNYQLEADLFRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNARTRRGGKKTVAGKNK 126
[Close]
BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A1I9LVX4_9PHAE (30S ribosomal protein S13, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX4_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 5.100e-68
Identity = 113/126 (89.68%), Postives = 118/126 (93.65%), Query Frame = 0 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 126
            MVRFLGRDLANNKKIKYALTAIYGIGLSRA EILDKAGL+++D+E IRTKDLS E ISNIRKVLEKDYQLE+DLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRG KK V  KNK
Sbjct:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRATEILDKAGLESLDQERIRTKDLSGENISNIRKVLEKDYQLESDLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGVKKIVVGKNK 126
[Close]
BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A2R4QQ15_9PHAE (30S ribosomal protein S13 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ15_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 5.710e-65
Identity = 107/126 (84.92%), Postives = 113/126 (89.68%), Query Frame = 0 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 126
            MVRFLGRDL NNKKIKYALT IYGIGLSRAKEIL+ AGL N+D+ G R KDLSDEEISN+RKVLEK+YQLE DL R+TNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTN RTRRG KKTVA K K
Sbjct:    1 MVRFLGRDLTNNKKIKYALTTIYGIGLSRAKEILESAGLTNIDQMGTRVKDLSDEEISNLRKVLEKNYQLEGDLVRITNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNARTRRGSKKTVAGKKK 126
[Close]
BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A141BSM2_9PHAE (30S ribosomal protein S13, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM2_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.640e-64
Identity = 106/126 (84.13%), Postives = 115/126 (91.27%), Query Frame = 0 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 126
            MVR LGRDLANNKKIKYALT IYGIGLSR+KEIL+ AGL N +++GIR KDLSDEEIS++RK+LEK+YQLE DL RLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTN RTRRGGKKTVA K K
Sbjct:    1 MVRLLGRDLANNKKIKYALTTIYGIGLSRSKEILESAGLDNAEKKGIRVKDLSDEEISSLRKILEKNYQLEGDLLRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNARTRRGGKKTVAGKKK 126
[Close]
BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A8F0FB58_9PHAE (Ribosomal protein S13 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB58_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 4.690e-64
Identity = 107/126 (84.92%), Postives = 111/126 (88.10%), Query Frame = 0 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 126
            MVRFLG DL NNKKI+YALTAIYGIGLSRAKEILD AGL+N DE G+RTKDLSDE ISNIRK+LEKDYQLE DL RLTNLNIKRLMENGSIKGRRHR GLPVRGQRTRTN RTRRG KK V  K K
Sbjct:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDSAGLENADELGLRTKDLSDENISNIRKILEKDYQLEGDLVRLTNLNIKRLMENGSIKGRRHRVGLPVRGQRTRTNARTRRGAKKAVVGKKK 126
[Close]
BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A8F0JX21_9PHAE (Ribosomal protein S13 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JX21_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 2.040e-58
Identity = 100/126 (79.37%), Postives = 109/126 (86.51%), Query Frame = 0 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 126
            MVR LGRDL N+KKIKYALTAIYGIGLSRAK+IL  AGL N+DE GIRTKDLSDE+ISN+RKVLEK  +LE DL R   L+IKRLMENGSIKGRRHR GLPVRGQRTRTN RT+RGGKKT+A K K
Sbjct:    1 MVRLLGRDLPNDKKIKYALTAIYGIGLSRAKDILKSAGLNNLDEMGIRTKDLSDEDISNLRKVLEKQDRLEGDLLRYGQLSIKRLMENGSIKGRRHRVGLPVRGQRTRTNARTKRGGKKTIAGKKK 126
[Close]
BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A7S6U9Z0_9STRA (30S ribosomal protein S13, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z0_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.950e-56
Identity = 97/126 (76.98%), Postives = 110/126 (87.30%), Query Frame = 0 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 126
            MVRF+G DL  NKK+KYALTAIYGIGLSRA+ IL KAGL NV+E+G+RT+DLSD+EIS++RKVLE ++QLE DL RLTNLNIKRLME  SI+GRRHR GLPVRGQRTRTN RTRRG KKTVA K K
Sbjct:    1 MVRFVGVDLPRNKKVKYALTAIYGIGLSRAEYILKKAGLINVEEKGLRTEDLSDQEISSLRKVLESEFQLEGDLRRLTNLNIKRLMEISSIRGRRHRVGLPVRGQRTRTNARTRRGSKKTVAGKKK 126
[Close]
BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A8E6D5X0_9PHAE (30S ribosomal protein S13, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5X0_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 4.380e-53
Identity = 92/126 (73.02%), Postives = 107/126 (84.92%), Query Frame = 0 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 126
            MVR LGRDL NNKKI+YALT IYGIGLSR++EIL+KAGLK++  +   TKDLSDEEIS +R+VLEKDY+LE +L RL +LNIK L +NG I+GRRHRAGLPVRGQRTRTN RTR+G KKTVA K K
Sbjct:    1 MVRLLGRDLPNNKKIQYALTRIYGIGLSRSREILNKAGLKDLSIQNKMTKDLSDEEISTLRRVLEKDYRLEGELLRLNDLNIKHLKDNGCIRGRRHRAGLPVRGQRTRTNARTRKGTKKTVAGKKK 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J733_ECTSI7.020e-7594.4430S ribosomal protein S13, chloroplastic n=6 Tax=E... [more]
A0A6B7EUU3_9PHAE2.010e-7495.2430S ribosomal protein S13 n=3 Tax=Phaeophyceae Tax... [more]
A0A0R6LUW3_UNDPI5.100e-6888.1030S ribosomal protein S13, chloroplastic n=26 Tax=... [more]
A0A1I9LVX4_9PHAE5.100e-6889.6830S ribosomal protein S13, chloroplastic n=1 Tax=P... [more]
A0A2R4QQ15_9PHAE5.710e-6584.9230S ribosomal protein S13 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSM2_9PHAE1.640e-6484.1330S ribosomal protein S13, chloroplastic n=14 Tax=... [more]
A0A8F0FB58_9PHAE4.690e-6484.92Ribosomal protein S13 n=1 Tax=Desmarestia aculeata... [more]
A0A8F0JX21_9PHAE2.040e-5879.37Ribosomal protein S13 n=1 Tax=Protohalopteris sp. ... [more]
A0A7S6U9Z0_9STRA1.950e-5676.9830S ribosomal protein S13, chloroplastic n=1 Tax=S... [more]
A0A8E6D5X0_9PHAE4.380e-5373.0230S ribosomal protein S13, chloroplastic n=1 Tax=I... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 1..126
e-value: 3.0E-37
score: 125.5
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 3..113
e-value: 6.9E-23
score: 81.4
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 1..123
score: 24.904
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 4..116
score: 35.423
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.10coord: 78..126
e-value: 3.0E-18
score: 67.0
NoneNo IPR availableGENE3D1.10.8.50coord: 1..75
e-value: 1.2E-21
score: 78.4
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 1..125
IPR019980Ribosomal protein S13, bacterial-typePANTHERPTHR10871:SF137S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIALcoord: 1..125
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 92..105
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 2..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59552contigH-paniculata_contig59552:263..643 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59552.13598.1mRNA_H-paniculata_contig59552.13598.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig59552 263..643 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig59552.13598.1 ID=prot_H-paniculata_contig59552.13598.1|Name=mRNA_H-paniculata_contig59552.13598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTK
DLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGL
PVRGQRTRTNGRTRRGGKKTVAVKNK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001892Ribosomal_S13
IPR02743730s_Rbsml_prot_S13_C
IPR019980Ribosomal_S13_bac-type
IPR018269Ribosomal_S13_CS
IPR010979Ribosomal_S13-like_H2TH