mRNA_H-paniculata_contig59552.13598.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59552.13598.1
Unique NamemRNA_H-paniculata_contig59552.13598.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: D1J733_ECTSI (30S ribosomal protein S13, chloroplastic n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J733_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 7.020e-75
Identity = 119/126 (94.44%), Postives = 125/126 (99.21%), Query Frame = 1 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 378
            MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEIL+KAGL+NVD+EG+RTKDLSDE+ISN+RKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVA KNK
Sbjct:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILEKAGLENVDKEGVRTKDLSDEDISNLRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKNK 126
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BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A6B7EUU3_9PHAE (30S ribosomal protein S13 n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A6B7EUU3_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 2.010e-74
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 1 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 378
            MVRFLGRDLANNK+IKYALT+IYGIGLSRAKEILDKAGL+NVD EGIRTKDLSDEEISNIRKVLE DYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVA KNK
Sbjct:    1 MVRFLGRDLANNKRIKYALTSIYGIGLSRAKEILDKAGLENVDREGIRTKDLSDEEISNIRKVLETDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKNK 126
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BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A0R6LUW3_UNDPI (30S ribosomal protein S13, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUW3_UNDPI)

HSP 1 Score: 209 bits (533), Expect = 5.100e-68
Identity = 111/126 (88.10%), Postives = 118/126 (93.65%), Query Frame = 1 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 378
            MVRFLG DLANNKKIKYALT IYGIGLSRA+EILD AGLK  D+ G+RTKDLSDE+ISN+RKVLEK+YQLEADL+RLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTN RTRRGGKKTVA KNK
Sbjct:    1 MVRFLGIDLANNKKIKYALTGIYGIGLSRAEEILDSAGLKAADDAGVRTKDLSDEDISNLRKVLEKNYQLEADLFRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNARTRRGGKKTVAGKNK 126
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BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A1I9LVX4_9PHAE (30S ribosomal protein S13, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX4_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 5.100e-68
Identity = 113/126 (89.68%), Postives = 118/126 (93.65%), Query Frame = 1 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 378
            MVRFLGRDLANNKKIKYALTAIYGIGLSRA EILDKAGL+++D+E IRTKDLS E ISNIRKVLEKDYQLE+DLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRG KK V  KNK
Sbjct:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRATEILDKAGLESLDQERIRTKDLSGENISNIRKVLEKDYQLESDLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGVKKIVVGKNK 126
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BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A2R4QQ15_9PHAE (30S ribosomal protein S13 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ15_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 5.710e-65
Identity = 107/126 (84.92%), Postives = 113/126 (89.68%), Query Frame = 1 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 378
            MVRFLGRDL NNKKIKYALT IYGIGLSRAKEIL+ AGL N+D+ G R KDLSDEEISN+RKVLEK+YQLE DL R+TNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTN RTRRG KKTVA K K
Sbjct:    1 MVRFLGRDLTNNKKIKYALTTIYGIGLSRAKEILESAGLTNIDQMGTRVKDLSDEEISNLRKVLEKNYQLEGDLVRITNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNARTRRGSKKTVAGKKK 126
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BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A141BSM2_9PHAE (30S ribosomal protein S13, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM2_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.640e-64
Identity = 106/126 (84.13%), Postives = 115/126 (91.27%), Query Frame = 1 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 378
            MVR LGRDLANNKKIKYALT IYGIGLSR+KEIL+ AGL N +++GIR KDLSDEEIS++RK+LEK+YQLE DL RLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTN RTRRGGKKTVA K K
Sbjct:    1 MVRLLGRDLANNKKIKYALTTIYGIGLSRSKEILESAGLDNAEKKGIRVKDLSDEEISSLRKILEKNYQLEGDLLRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNARTRRGGKKTVAGKKK 126
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BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A8F0FB58_9PHAE (Ribosomal protein S13 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB58_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 4.690e-64
Identity = 107/126 (84.92%), Postives = 111/126 (88.10%), Query Frame = 1 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 378
            MVRFLG DL NNKKI+YALTAIYGIGLSRAKEILD AGL+N DE G+RTKDLSDE ISNIRK+LEKDYQLE DL RLTNLNIKRLMENGSIKGRRHR GLPVRGQRTRTN RTRRG KK V  K K
Sbjct:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDSAGLENADELGLRTKDLSDENISNIRKILEKDYQLEGDLVRLTNLNIKRLMENGSIKGRRHRVGLPVRGQRTRTNARTRRGAKKAVVGKKK 126
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BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A8F0JX21_9PHAE (Ribosomal protein S13 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JX21_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 2.040e-58
Identity = 100/126 (79.37%), Postives = 109/126 (86.51%), Query Frame = 1 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 378
            MVR LGRDL N+KKIKYALTAIYGIGLSRAK+IL  AGL N+DE GIRTKDLSDE+ISN+RKVLEK  +LE DL R   L+IKRLMENGSIKGRRHR GLPVRGQRTRTN RT+RGGKKT+A K K
Sbjct:    1 MVRLLGRDLPNDKKIKYALTAIYGIGLSRAKDILKSAGLNNLDEMGIRTKDLSDEDISNLRKVLEKQDRLEGDLLRYGQLSIKRLMENGSIKGRRHRVGLPVRGQRTRTNARTKRGGKKTIAGKKK 126
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BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A7S6U9Z0_9STRA (30S ribosomal protein S13, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z0_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.950e-56
Identity = 97/126 (76.98%), Postives = 110/126 (87.30%), Query Frame = 1 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 378
            MVRF+G DL  NKK+KYALTAIYGIGLSRA+ IL KAGL NV+E+G+RT+DLSD+EIS++RKVLE ++QLE DL RLTNLNIKRLME  SI+GRRHR GLPVRGQRTRTN RTRRG KKTVA K K
Sbjct:    1 MVRFVGVDLPRNKKVKYALTAIYGIGLSRAEYILKKAGLINVEEKGLRTEDLSDQEISSLRKVLESEFQLEGDLRRLTNLNIKRLMEISSIRGRRHRVGLPVRGQRTRTNARTRRGSKKTVAGKKK 126
[Close]
BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Match: A0A8E6D5X0_9PHAE (30S ribosomal protein S13, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5X0_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 4.380e-53
Identity = 92/126 (73.02%), Postives = 107/126 (84.92%), Query Frame = 1 
Query:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTKDLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAVKNK 378
            MVR LGRDL NNKKI+YALT IYGIGLSR++EIL+KAGLK++  +   TKDLSDEEIS +R+VLEKDY+LE +L RL +LNIK L +NG I+GRRHRAGLPVRGQRTRTN RTR+G KKTVA K K
Sbjct:    1 MVRLLGRDLPNNKKIQYALTRIYGIGLSRSREILNKAGLKDLSIQNKMTKDLSDEEISTLRRVLEKDYRLEGELLRLNDLNIKHLKDNGCIRGRRHRAGLPVRGQRTRTNARTRKGTKKTVAGKKK 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59552.13598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J733_ECTSI7.020e-7594.4430S ribosomal protein S13, chloroplastic n=6 Tax=E... [more]
A0A6B7EUU3_9PHAE2.010e-7495.2430S ribosomal protein S13 n=3 Tax=Phaeophyceae Tax... [more]
A0A0R6LUW3_UNDPI5.100e-6888.1030S ribosomal protein S13, chloroplastic n=26 Tax=... [more]
A0A1I9LVX4_9PHAE5.100e-6889.6830S ribosomal protein S13, chloroplastic n=1 Tax=P... [more]
A0A2R4QQ15_9PHAE5.710e-6584.9230S ribosomal protein S13 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSM2_9PHAE1.640e-6484.1330S ribosomal protein S13, chloroplastic n=14 Tax=... [more]
A0A8F0FB58_9PHAE4.690e-6484.92Ribosomal protein S13 n=1 Tax=Desmarestia aculeata... [more]
A0A8F0JX21_9PHAE2.040e-5879.37Ribosomal protein S13 n=1 Tax=Protohalopteris sp. ... [more]
A0A7S6U9Z0_9STRA1.950e-5676.9830S ribosomal protein S13, chloroplastic n=1 Tax=S... [more]
A0A8E6D5X0_9PHAE4.380e-5373.0230S ribosomal protein S13, chloroplastic n=1 Tax=I... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59552contigH-paniculata_contig59552:263..643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score230.3
Seed ortholog evalue4.9e-58
Seed eggNOG ortholog2880.D1J733
Preferred namerps13
KEGG rclassRC02795
KEGG koko:K02952,ko:K03040
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03010,ko03020,map00230,map00240,map01100,map03010,map03020
KEGG ModuleM00178,M00179,M00183
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0099@1,KOG3311@2759
EC2.7.7.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,br01611,ko00000,ko00001,ko00002,ko01000,ko03011,ko03021,ko03400
Exons1
Model size381
Cds size381
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930655.420289-CDS-H-paniculata_contig59552:262..6431622930655.420289-CDS-H-paniculata_contig59552:262..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59552 263..643 -
1691481391.7992003-CDS-H-paniculata_contig59552:262..6431691481391.7992003-CDS-H-paniculata_contig59552:262..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59552 263..643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59552.13598.1prot_H-paniculata_contig59552.13598.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59552 263..643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59552.13598.1

>prot_H-paniculata_contig59552.13598.1 ID=prot_H-paniculata_contig59552.13598.1|Name=mRNA_H-paniculata_contig59552.13598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILDKAGLKNVDEEGIRTK
DLSDEEISNIRKVLEKDYQLEADLYRLTNLNIKRLMENGSIKGRRHRAGL
PVRGQRTRTNGRTRRGGKKTVAVKNK*
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mRNA from alignment at H-paniculata_contig59552:263..643-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59552.13598.1 ID=mRNA_H-paniculata_contig59552.13598.1|Name=mRNA_H-paniculata_contig59552.13598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=381bp|location=Sequence derived from alignment at H-paniculata_contig59552:263..643- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCGATTTCTTGGAAGAGATTTAGCAAATAATAAAAAAATTAAGTA
TGCTTTGACAGCAATTTATGGGATTGGTTTATCTCGGGCAAAAGAGATTT
TAGACAAGGCAGGGTTAAAGAATGTCGATGAAGAAGGGATTAGAACTAAA
GATCTATCTGATGAAGAAATTAGTAATATCAGAAAGGTTTTAGAAAAAGA
TTATCAACTTGAAGCAGACCTATATCGTCTAACAAACTTGAATATAAAAC
GTTTAATGGAAAATGGTTCTATTAAGGGTCGTAGACACCGAGCAGGTTTA
CCAGTTAGAGGGCAACGAACAAGAACTAATGGCAGAACTCGACGAGGAGG
AAAAAAAACAGTGGCAGTAAAAAATAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig59552:263..643-

>mRNA_H-paniculata_contig59552.13598.1 ID=mRNA_H-paniculata_contig59552.13598.1|Name=mRNA_H-paniculata_contig59552.13598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig59552:263..643- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCGATTTCTTGGAAGAGATTTAGCAAATAATAAAAAAATTAAGTA
TGCTTTGACAGCAATTTATGGGATTGGTTTATCTCGGGCAAAAGAGATTT
TAGACAAGGCAGGGTTAAAGAATGTCGATGAAGAAGGGATTAGAACTAAA
GATCTATCTGATGAAGAAATTAGTAATATCAGAAAGGTTTTAGAAAAAGA
TTATCAACTTGAAGCAGACCTATATCGTCTAACAAACTTGAATATAAAAC
GTTTAATGGAAAATGGTTCTATTAAGGGTCGTAGACACCGAGCAGGTTTA
CCAGTTAGAGGGCAACGAACAAGAACTAATGGCAGAACTCGACGAGGAGG
AAAAAAAACAGTGGCAGTAAAAAATAAATAAATGGTTCGATTTCTTGGAA
GAGATTTAGCAAATAATAAAAAAATTAAGTATGCTTTGACAGCAATTTAT
GGGATTGGTTTATCTCGGGCAAAAGAGATTTTAGACAAGGCAGGGTTAAA
GAATGTCGATGAAGAAGGGATTAGAACTAAAGATCTATCTGATGAAGAAA
TTAGTAATATCAGAAAGGTTTTAGAAAAAGATTATCAACTTGAAGCAGAC
CTATATCGTCTAACAAACTTGAATATAAAACGTTTAATGGAAAATGGTTC
TATTAAGGGTCGTAGACACCGAGCAGGTTTACCAGTTAGAGGGCAACGAA
CAAGAACTAATGGCAGAACTCGACGAGGAGGAAAAAAAACAGTGGCAGTA
AAAAATAAATAA
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