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Homology
BLAST of mRNA_H-paniculata_contig5954.13597.1 vs. uniprot
Match: A0A6H5K4J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J9_9PHAE) HSP 1 Score: 128 bits (321), Expect = 2.750e-30 Identity = 74/142 (52.11%), Postives = 86/142 (60.56%), Query Frame = 1
Query: 199 FLIDVSKANSDLSGLKSSDAGAAGRALTAEEVQLLESYGNWATDWSLVRLSGRSAAGR----IAVERVRGNCFHGPVLLGDFAGEIRLPGAEHSPQPCGVYGSTLSWCIIGDGCLVKGCSXXXXXXXXXXXXXXXXXXVSCS 612
FL DV+ A +GL+S GR LT+EEV+ L+ +GNWAT+WSLVR+S S IA RVRG FHGPVLLGDF+GEI LP AE QPCGVY STLSW ++GDG LVKGC VSCS
Sbjct: 26 FLEDVAAARGVYAGLQSE-----GRGLTSEEVRKLQVHGNWATNWSLVRVSEGSGPSETKSSIAAGRVRGCVFHGPVLLGDFSGEIILPVAEQYSQPCGVYNSTLSWVVVGDGALVKGCHAMTRCVVGPGAAVINCGLVSCS 162
BLAST of mRNA_H-paniculata_contig5954.13597.1 vs. uniprot
Match: D7FSJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ4_ECTSI) HSP 1 Score: 123 bits (309), Expect = 1.310e-28 Identity = 68/117 (58.12%), Postives = 80/117 (68.38%), Query Frame = 1
Query: 199 FLIDVSKANSDLSGLKSSDAGAAGRALTAEEVQLLESYGNWATDWSLVRLSGRSAAGR----IAVERVRGNCFHGPVLLGDFAGEIRLPGAEHSPQPCGVYGSTLSWCIIGDGCLVK 537
FL D + A +GL+S GR LT+EEV+ LE +GNWATDWSLVR+S S + + I RVRG FHGPVLLGDF+GEI LP AE QPCGVY STLSW I+GDG L+K
Sbjct: 26 FLQDAAAARGVYAGLQSE-----GRGLTSEEVRELEVHGNWATDWSLVRVSKGSGSSKTTSSIGAGRVRGCVFHGPVLLGDFSGEIILPVAEQYSQPCGVYNSTLSWSIVGDGALIK 137
BLAST of mRNA_H-paniculata_contig5954.13597.1 vs. uniprot
Match: A0A7C0XTT9_9BACT (DUF4954 family protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7C0XTT9_9BACT) HSP 1 Score: 57.8 bits (138), Expect = 5.080e-6 Identity = 40/136 (29.41%), Postives = 61/136 (44.85%), Query Frame = 1
Query: 271 RALTAEEVQLLESYGNWATDWSLVRLSGRSAAGRIAVERVRGNCFHGPVLLGDFAGEIRLPGAEHSPQPCGVYGSTLSWCIIGDGCLVKGCSXXXXXXXXXXXXXXXXXXVSCSHGGTLPPNATGNANKVTADTGG 678
R LTAEE++ L+ +GNWA DWS +++ G+ ERVR + F G V++G F + + G P G+Y ST+ I + L+K ++C G T G + +TGG
Sbjct: 22 RPLTAEEIEQLKKFGNWAEDWSKIKV-GKD----FKPERVRNSFFFGEVIIGSFEKSVNVDGLI---LPSGIYRSTIVNSKIANNSLIKDVKFLANSIVCEEVVIMNVDEINCKKGSTF---GNGEELPIAIETGG 146
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 123.2 |
| Seed ortholog evalue | 1.6e-25 |
| Seed eggNOG ortholog | 2880.D7FSJ4 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 29314@1,2R9XZ@2759 |
| Ec32 ortholog description | Trimeric LpxA-like |
| Ec32 ortholog | Ec-11_003920.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 732 |
| Cds size | 729 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5954.13597.1 >prot_H-paniculata_contig5954.13597.1 ID=prot_H-paniculata_contig5954.13597.1|Name=mRNA_H-paniculata_contig5954.13597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=243bp
YSTAEAGGGEFEYRSRGDKCTCCTVPIVCTSKLGKRHIYYAAMECIGSSA AATIASATTSTTTYSPFLIDVSKANSDLSGLKSSDAGAAGRALTAEEVQL LESYGNWATDWSLVRLSGRSAAGRIAVERVRGNCFHGPVLLGDFAGEIRL PGAEHSPQPCGVYGSTLSWCIIGDGCLVKGCSTVSRCIVRTGAVVVGCGV VSCSHGGTLPPNATGNANKVTADTGGDGGGRGTKFGNGIIVVV back to topmRNA from alignment at H-paniculata_contig5954:6032..12450- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5954.13597.1 ID=mRNA_H-paniculata_contig5954.13597.1|Name=mRNA_H-paniculata_contig5954.13597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6419bp|location=Sequence derived from alignment at H-paniculata_contig5954:6032..12450- (Halopteris paniculata Hal_grac_a_UBK monoicous) TATAGTACAGCAGAAGCAGGAGGTGGGGAGTTTGAGTACAGATCAAGGGG
CGACAAGTGCACTTGTTGTACTGTACCCATTGTATGCACATCTAAACTGG
GGAAAAGACATATCTATTACGCAGCCATGGAATGTATAGGGAGCAGCGCT
GCTGCAACTATCGCCTCGGCTACCACTAGCACCACTACGTACTCGCCTTT
TTTGATCGATGTGTCGAAGGCGAACAGCGATTTATCTGGATTGAAGAGCA
GCGATGCCGGTGCTGCAGGGCGGGCGCTTACCGCCGAGGAGGTGAGAGAA
GTAGCGTAGCAAAGAGCAAGAGAGAGAACTGAGAGAATTACTGCGTATGA
AATGATGAGGATGGGGTCTTGGTATCAATTGCAGCAGTGCAGCAAGTGTT
GTGGATTACTTGGTTTGCTCTCTGGTTGTCTGTGTGGTGTTGGAACAAAA
TCTCTGAACAAAAACGGCAAGAAAAAATCTGCGCGTGGGCCTCCTCCAGT
TCGGATCAGTTCTCCCGGAGGTAGAGTTGGTATAATGCAAGCTTGTCCGC
CTTCTATAGGTAGGCTTAAATTTACAACTGTATTAATGGAAGAAAGCATC
GATGCCCACAAGCACAGCAGCCACCATGGAGTAATTGCCAGTCACGATTC
GATTTGCAGTTTGGGGAGAAAATTGACCCAAGACAAAATGCAACTGATAC
GATGTTATCAACATAAGGATGTACGGGTACATGCAGTATGAGAATTTCGT
CCTGTAATCATGTAGATGACAGTAGACAGTGGATGAAATCGTACATAAAA
CTTGCTCGTGTATACATGGAACGTCAGCAAGAGAGTGGTCACAACCGGTA
TGTGATTTTGAGACAAAAACGCAAAAGCTTGATAATAGAGGCTAGCGAGT
TTTTGGTGCTCCCCTGCCTGGTGTGTGTGCATTGCGCTTGGACATTGTGC
TATGTAGATAAGATCACTTCCTGTACAGACTGTGTCATCTGACTGTTGGG
GATACGTTCTCATATCGGATGATGGGATATGTGGATCATGAGGGGACGTT
GTCTGTTGTTCGAACCCGCACCAAACACCAGTGGTATGTTCTGATCGGCT
GTCGCCTATCCGCGCCTGCCAAAAACACAAGTAGCTACCGTTTTTCAACT
CAGTAGTGTAGTATCAGATAAACCATGTAATTGATAATTCATATCTTTTG
TTTGTGGATCCTCCTCATTCTCTGAAATTCTGGACTTGGGGTATACACAT
TCAGACACAGATGCGGGGGGATTTTTTGCAATCCATCTCTCTGCTAGATA
CAACTGTACTACTAGTAGTTTCGTCAACACTATTAATCCTAAAATTCCTT
GTGGTGGTCAGCTACAACTATGCGCGTGGTATTCCGTTTTCCGTCCTCGT
ACACATACAAGCAAAATGTACAACGTCTCCCTACGCTGGCGTGTGCAAGC
ATAACAAAACCCTGTAGTGAGGTTTTATTTTAATACATGATTACAGTAAC
CAAACGTTGTTCCGAAACTACTACGAGGATGACAACAACAAAGTAAATAT
ATAACTTCATTTTGTGCCATAGTAAAGTCGGCTGCGTTCGACAGATTATA
TCACCAAATCTAACTGAGAGTGTTCAAAGGCTACGGTTGCAATCATGGAG
AAGCTGAAATCTGATAGATTCGCATGGCCTATTCCGAAGTGCATTCCGAT
TTCTGTATCAGGATCCATGACCGCTCAAGGTTGGGCCATTTTTTCGACTT
AACTTATGGTAAAAAGAAAGTAGCACGTTTATAAAGCATGAATACAATGA
CAGCCGGTAAGTCCAACAGCGTAGCATACATTTAGCGGGTAAAGTTGTTA
TTCATTCACCAGTCAGTACTTGCTCACCTCCTGTTGTAGGGTCATCTCTT
ACGGTGTCAAAAAAACTTCAGTCAGAATCATAAAATCCCGATTATTTTCC
TTAGACATAAAATGACTGGGAAAAATTGATAGTTAAATTTTTGGTGGCGT
TTTGCTAACGGCGCAATTGAGTTGAGAGGATTTCGATCACACGAGTTCTC
GTCCAGCACGCCCTCATCCTGTGAAAGCGGACCACCATGAATGCACCATC
CACCGCAATGTTTATCAAGGCAAGCCCTTGCGTGGAATTGGTGTGGTAGG
AAATGAGGGCTCAAGGATTACATTCGAGTGTGTGCAAGATACAATAGATC
ACTCTACAGAATGTACCACAGTGGTACGCTTATACGTCTGTTAAGAACGG
TGGGACCCTGACCCTGAGCGGGAGGTAGAAGAAGGTGGTGGAGCAGGACC
AAGGATTTCGCCGTTGACAGCTTCTTCCGCTGGGTGAAGGAAACCTCCGA
GCTGAATCTCCCTGGGTGGGAGATTCATAGTTTATTCGGAAAGATGACAA
GCGCCGCCGCACCCATGCGTCGATTGCGTCTGTCGTCTTCGTCTAGAATA
TCGACGGCCGCCACTACAACAGCGAGCGCCGCCGACATAAACGATTGCCA
TTCCTGCAGATCTTCCATAGTGTGGCTGGGCTCACACCTTGGATTGTGTA
TGTGCTTCGTACTGGCATCTGTGACCAGCGCAGGTGCTTTACTGTGGGCT
ATAAAACATCATCTAGGAGAACACGCCAGTGTATCTCGTTGGAGTGCCAT
TTTTATGATTTTGCGGAGATCTCACCCTCCAGTTAAAAAATTGCGATTTT
TTTTTACTCGGCAAGCTGTCGATTCTCCCCGATAAAAAAAATTGTCAAAA
AAAAATATTTTTTTAGCCCATAAGATAATGGATAAAACATCTCCAGTAAA
AAAATTGGTATTTTATCATTTTGACTGGGGTGTTTTTACACCATAAAAGA
TGGCCTAACAGCGGTAAAATAAAAAGCAATAAAATAACCAAATAGCCCAT
GCGATAACTACTGTCTGTACTAATGTACCAGGTGCCCGAGGGGTTCACTT
TCATGCAAGCGTGATTTCCTGGACCATTCATCTTCATTGTACTGTGCTGT
GATGTTGGCTGTTGGCCGTTGGTCGTTGGTCGTTGGCTGTTGAAAATATC
GAAAGAGCCTACATACTATTTAGATACGAGTAACAAAGACCCCAATAAGC
TACAAGTTAACGCCTTACAATACAACAGGTGAAGCCGAAACAGGTAAAAC
AAGCGCAAAGTGTCAGAAGAATTGGATTTGTATGACCGACTGAAAACAAT
ACTGCGAAATTAACTTTCAACGCTGCACGTGCCAGACGTCAACTTTTGCG
GTGTTTTTTACGTTTTATTTAATACTTGGAGTAAAGTATATAGATAAAAC
TATCCATACTGTTATATGATAAATGCTCGTGGAGATCTCTGCAACGACGC
AACTTTCGGTGCCACATGGGTGCTGCAGTGCAACACCGTGATTTTCGATT
AACCGAGTTTAAGGAATCCGAAAGAGGATGTCACCCAGAATGTCAGGTTG
ATCGGTTGCACAATCTTCCCGATCGGTAGGTCGCGGGTTCAGTACCTTGT
CCTTGTACTCTACGGAAGGGAAAGAATACTCTCGGAGTATACCGTTGCTA
CCTACAACGTAGACGAGCGAGTGGGACTGCTGTCCCCCGCCGCGCGAGAA
TACAAGGAAAGCACGAGGCATTACACTACCCAACAGCTTACGATCGGGCA
GTCCCATCGGAAAACTGATTCGCGACGGGAAATAAAAAAACAGAATTGGA
GAAAGTAGGTAAATCGTTGATGTGGAATTTAAGGATATGCGGTTATGCGG
CAAGGTGGAGAGCGTGGGAGAACCCGCGGTTTGGCGATTATATCTAAGTT
ATTTTTCCCTATAGACTGTGGACAGCACAAGAGTATACGTGCTTCATTCG
GAACAATGTGAATACACGTGCACGTGTGTAGATCGGACAACAGTGCAGGC
TATAGGACTCTACTGTAGTACCTCAGGTGGTGAGGGTTTTATCGCCGTCG
ATCTTCTGGGCAACTCGGGCGGTGCTGCTGCAGTAAATAGTGACACAATC
CCCTACACACACTCGTTATATTTCGCACACTCGTCGCGATCTACATTTCT
GGGAGCATCAATCAGTAAAAGTACCTTTCAGAGAACGTCTAATAACACTA
AAAATTTGTAATAAATACAATACCAGGCATACATCGATGTATATTTCATA
ATTATCACTTTTATTGGTTTCGCATCAATTCGTTTCACCAAGTTTTTCAG
CACTTCCAACACTAATGTACTAGATTTGTCCTACTGACTGTTCTGTTCCT
GTTTATTATTTTTCCGATCACAGGTGCAATTGCTCGAAAGTTACGGAAAC
TGGGCTACAGACTGGTCGCTTGTACGGCTATCTGGTCGTTCCGCCGCCGG
TCGGATCGCAGTGGAACGTGTGCGAGGGAATTGCTTCCACGGACCCGTGC
TGCTCGGCGACTTTGCGGGAGAGGTCAGGTTTTATTTGTGCTCCCGTTCG
TGTTTTTAACTTGTGGGGGCGAGCAAAGAGTCATCCTACGGTAGTGGGGG
AAGTCAATTGTTTAAGAAAGGCTGCTTCGCAAAAAAGTGGTTAAAAAATA
ACGGGAATCAAAACTATGTCAATTAGATGTGTTCGTGCATCCCCCAAGGT
GCGCAGTCCAGGAGTAAAAGTGGGATTTCTGTTGAAGGGTGTTGAGATAA
GATACTCTACCGAATGATGTAGTCATGAGAAAGCAGCAATGGACTTAATG
ATGACAGGATCGTAGACAGTGTCGCAGATGTCCAAAATTGGTGATTCGGG
GTAAAATAATATTCGGATCATATTCTTGTTGACTGAGCAGCAGCCGGGAT
GTTGGTCAAATAAATTGATAACAGAGAAGGATCTAGGAATGATGCATCTG
TAGACCAGGGATATTAAAAAGGAAGGAAACCATACAGAAACTGCTTGAGT
AAAACTATTGCCCAGGACACGCCAAAGACTGCCACGTCTGAGGAAGGAGC
CGTGTCACAGAGTCAGAGAAATATCAACAAAGGGCGGACAACAAATGTAA
CTGCACAAAAAAATGCCCAATTCCCTTCTCACGTCAACTCCTTCGTTAAA
TTAAGCGGCTCAAATACCCCACCCTTCCCATAGGATGACTCCAAAGTTGA
TCGACGCAACCACCTTCGAGTACCGGAAACTTTGGTAAGACCTCACCGAT
CCTATGCTTGAATGCTCTTGGCGAGGCCAATGCTTGGCATTTCGTACGTA
CTGTAGCACGTAGTATGTATACTTCTGATGGTAAATATTGCATGAAAAAT
TTGATGTTGAGTGTTGTATTAAGGAAACTTTGTCTGTGTGGAATCGCTCG
GCGAGCTGGCTGACGGTACAGTTCGGTTATTTCGCCGATTTAGAAACAGA
AAGGGCGGTCTATTTGTAGTTTCAGCTGTTTCGAAAAGCCTTGAACGGGA
TGATTCCTTTCCTCTCTATCCAGATGACCAAACTCACCGTCTCCGCGCAC
ATTTTCTACATAAATCGTTGTCATCTTGCGCTGTTGCTGTGAAGTACGAC
CATGATGACCCTTGCTGTCTCCCTCCCCCCCTTGTTGATGTCTTTTTGCT
GGTGAGTGTACACGACTGAAATTTGAAGTCAATTGTATAACCTCGACATG
GCTATTACCCCCCCCCCCGTCTCTCATCACAGATTCGCCTACCCGGTGCC
GAGCACTCCCCGCAACCTTGCGGTGTCTACGGGAGTACCTTGTCGTGGTG
CATAATCGGCGACGGCTGTCTCGTGAAGGCAAGTATTTGAGGACAACAGA
AATCACGAGAAACTCAAGGTGGAGAATAAACACACAAACAGATGGGATCC
TTCCGTTTTTTTGTGTGTCATTATCCAGCAGTGAACCTGTGAAATCCATA
GATTTATTGGACGCAAAAGAAGGCGATTGGTAATGTTAGGGGATACGAAA
TACCGGCCGGCCTGGAAGATGAGAGGATTGGTTACTGTATCAGCAGGCAG
TAGAGAAAAAAAAAGGCAGCCATTTTTTTCATACTAGAAAAGAACAGTTG
GTAATCGGCGATTGACCGGGCTTATATGTACAGCAGGAACAATGTCTCCG
TTGTCTCATGTAGGGTACTGCCCGGTTACATCATGTGGCGGTCGAGGCAT
GCAAAGCATGCGCACTAGTCTCCCCCCCCGCTGAATCGCCCTCCCTGCAC
AATGAATTCCTCTGGACCAAACCTTTCCCTCCAAAACACCACCACTACTA
CCACCGCTACCACCATCGCCAAACAGGGCTGCAGCACTGTCTCCCGATGC
ATCGTACGTACCGGCGCAGTTGTGGTGGGCTGTGGGGTAGTATCCTGCTC
GCACGGCGGTACACTCCCCCCCAATGCCACCGGCAACGCCAACAAAGTGA
CTGCCGATACGGGAGGGGATGGGGGAGGACGAGGGACAAAATTTGGCAAC
GGTATTATTGTCGTCGTCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig5954:6032..12450- >mRNA_H-paniculata_contig5954.13597.1 ID=mRNA_H-paniculata_contig5954.13597.1|Name=mRNA_H-paniculata_contig5954.13597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at H-paniculata_contig5954:6032..12450- (Halopteris paniculata Hal_grac_a_UBK monoicous) TATAGTACAGCAGAAGCAGGAGGTGGGGAGTTTGAGTACAGATCAAGGGG CGACAAGTGCACTTGTTGTACTGTACCCATTGTATGCACATCTAAACTGG GGAAAAGACATATCTATTACGCAGCCATGGAATGTATAGGGAGCAGCGCT GCTGCAACTATCGCCTCGGCTACCACTAGCACCACTACGTACTCGCCTTT TTTGATCGATGTGTCGAAGGCGAACAGCGATTTATCTGGATTGAAGAGCA GCGATGCCGGTGCTGCAGGGCGGGCGCTTACCGCCGAGGAGTATAGTACA GCAGAAGCAGGAGGTGGGGAGTTTGAGTACAGATCAAGGGGCGACAAGTG CACTTGTTGTACTGTACCCATTGTATGCACATCTAAACTGGGGAAAAGAC ATATCTATTACGCAGCCATGGAATGTATAGGGAGCAGCGCTGCTGCAACT ATCGCCTCGGCTACCACTAGCACCACTACGTACTCGCCTTTTTTGATCGA TGTGTCGAAGGCGAACAGCGATTTATCTGGATTGAAGAGCAGCGATGCCG GTGCTGCAGGGCGGGCGCTTACCGCCGAGGAGGTGCAATTGCTCGAAAGT TACGGAAACTGGGCTACAGACTGGTCGCTTGTACGGCTATCTGGTCGTTC CGCCGCCGGTCGGATCGCAGTGGAACGTGTGCGAGGGAATTGCTTCCACG GACCCGTGCTGCTCGGCGACTTTGCGGGAGAGGTGCAATTGCTCGAAAGT TACGGAAACTGGGCTACAGACTGGTCGCTTGTACGGCTATCTGGTCGTTC CGCCGCCGGTCGGATCGCAGTGGAACGTGTGCGAGGGAATTGCTTCCACG GACCCGTGCTGCTCGGCGACTTTGCGGGAGAGATTCGCCTACCCGGTGCC GAGCACTCCCCGCAACCTTGCGGTGTCTACGGGAGTACCTTGTCGTGGTG CATAATCGGCGACGGCTGTCTCGTGAAGATTCGCCTACCCGGTGCCGAGC ACTCCCCGCAACCTTGCGGTGTCTACGGGAGTACCTTGTCGTGGTGCATA ATCGGCGACGGCTGTCTCGTGAAGGGCTGCAGCACTGTCTCCCGATGCAT CGTACGTACCGGCGCAGTTGTGGTGGGCTGTGGGGTAGTATCCTGCTCGC ACGGCGGTACACTCCCCCCCAATGCCACCGGCAACGCCAACAAAGTGACT GCCGATACGGGAGGGGATGGGGGAGGACGAGGGACAAAATTTGGCAACGG TATTATTGTCGTCGTCGGCTGCAGCACTGTCTCCCGATGCATCGTACGTA CCGGCGCAGTTGTGGTGGGCTGTGGGGTAGTATCCTGCTCGCACGGCGGT ACACTCCCCCCCAATGCCACCGGCAACGCCAACAAAGTGACTGCCGATAC GGGAGGGGATGGGGGAGGACGAGGGACAAAATTTGGCAACGGTATTATTG TCGTCGTC back to top
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