mRNA_H-paniculata_contig59525.13596.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59525.13596.1
Unique NamemRNA_H-paniculata_contig59525.13596.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A6A4ESP9_9STRA (Chromo domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4ESP9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.390e-9
Identity = 43/113 (38.05%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    1 EVQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEH-QAQYNIERIGEVKKAEHRDD---HVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQL---KQQKLKQPLK 318
            +V+HLVTGE    H  R++F+ADK+LEVT       + LEH  AQ  I R+ E+ +    D    +   V W GL+  E +WE +S +  D SA+++A +   K  KL+  LK
Sbjct:    7 KVKHLVTGEELDVHASRLKFFADKDLEVTE------ELLEHVAAQGIILRVRELIRHRWNDQSRSNEVLVGWHGLEAIEDSWEPLSAIYKDVSALVQAYVASAKDSKLEHHLK 113          
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A6A3LWQ0_9STRA (Chromo domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LWQ0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.950e-8
Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    1 EVQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQA-QYNIERIGEVKKAEHRDD---HVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQL---KQQKLKQPLK 318
            +V+HLVTGE    H  R++F+ DK+LEVT       + LEH A Q  I R+ E+ +    D    +   V+W GL+  E +WE +S +  D S +++A +   K  KL++ LK
Sbjct:   67 KVKHLVTGEELDVHASRLKFFVDKDLEVTE------ELLEHMAAQGIILRVRELIRNRWNDQSRSYEILVWWHGLEAIEDSWEPLSAMYKDVSTLVQAYVASAKDSKLERHLK 173          
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: W4GEH4_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GEH4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.820e-8
Identity = 32/97 (32.99%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    4 VQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQAQYNI----ERIGEVKKAEHRDDHVFRVYWQGLDEGESTWELVSKVLVDASAVLRA 282
            ++HLVT E R AH  R++ YA+   EVT       + LEH ++  I    + I   K      D + +V+W+G ++ ES+WE ++K++ +  AV++A
Sbjct:   67 LEHLVTHEEREAHTARVKMYAETSFEVTE------EILEHVSEQGIVSQVKSIAGDKFVPDVSDFMLKVFWEGFEDIESSWEPLNKLMRECPAVVKA 157          
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A6A3HXT7_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HXT7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.440e-7
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    1 EVQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEH-QAQYNIERIGEVKKAEHRDD---HVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQL---KQQKLKQPLK 318
            +V+HLVTGE    H  R++F+ADK+LEVT       + LEH  AQ  I R+ E+ +    D    +   V W GL+  E +WE +S +  D SA+++A +   K  KL++ LK
Sbjct:  618 KVKHLVTGEELDVHASRLKFFADKDLEVTE------ELLEHVAAQGIILRVRELIRHRWNDQSRSNEVLVGWHGLEAIEDSWEPLSAMYKDVSALVQAYVASAKDSKLERHLK 724          
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A6G0MQU0_9STRA (Chromo domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MQU0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.440e-7
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 1
Query:    4 VQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQAQYNIERIGEVKKAEHR-----DDHVFRVYWQGLDEGESTWELVSKVLVDASAVLRA 282
            +QHLVTG     H  R++FYAD  LEV        + LEH +   I    E  KA HR     DD+   V W+GL+E E ++EL++ +  D SA++ A
Sbjct:  132 IQHLVTGAEMDVHASRLKFYADDSLEVNE------ELLEHISAQGIILAVEKLKA-HRWNPDIDDYEILVQWKGLEEIEDSYELLTSLAKDVSALVTA 222          
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: W2IAR5_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2IAR5_PHYPR)

HSP 1 Score: 54.7 bits (130), Expect = 3.220e-6
Identity = 39/109 (35.78%), Postives = 57/109 (52.29%), Query Frame = 1
Query:    4 VQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQAQYNIE-RIGEVKKAEHR-----DDHVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQLKQQKLKQP 312
            ++HLVTG     H  R++FYADK L VT       + LEH A   I   I E+KK  HR      D+   V W+GL+  E +WEL++ +  +   +L   +++Q  K P
Sbjct:  637 IRHLVTGCELDVHESRLKFYADKNLNVTE------EILEHVASQGIILAINELKK--HRWNKSIKDYEVLVNWKGLESVEDSWELLTSLAKEVHVLLNQCIQKQGSKLP 737          
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: W2PQB6_PHYPN (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PQB6_PHYPN)

HSP 1 Score: 54.7 bits (130), Expect = 3.290e-6
Identity = 39/109 (35.78%), Postives = 57/109 (52.29%), Query Frame = 1
Query:    4 VQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQAQYNIE-RIGEVKKAEHR-----DDHVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQLKQQKLKQP 312
            ++HLVTG     H  R++FYADK L VT       + LEH A   I   I E+KK  HR      D+   V W+GL+  E +WEL++ +  +   +L   +++Q  K P
Sbjct:  891 IRHLVTGCELDVHESRLKFYADKNLNVTE------EILEHVASQGIILAINELKK--HRWNKSIKDYEVLVNWKGLESVEDSWELLTSLAKEVHVLLNQCIQKQGSKLP 991          
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A024TUZ8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUZ8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.340e-6
Identity = 31/112 (27.68%), Postives = 62/112 (55.36%), Query Frame = 1
Query:    1 EVQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQAQ-YNIERIGEVKKAEHRDDHVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQLKQQKLKQPLKRALKA 333
            +V++LVTGE R AH IR++FYAD++L+++        ++ H ++ + +E I   +       +  ++ W+GL + E++WE    +  D   + +A  K++     +K+  KA
Sbjct: 1156 DVRNLVTGEQRPAHAIRLKFYADEDLQLSE---DFIDHVAHNSEGHEVEVIVSARYVPATKSYEVQIKWRGLRDVENSWEPAQNIQEDVPTMFKAFCKKRAKLAIVKKMAKA 1264          
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A6A3GBI2_9STRA (Chromo domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GBI2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.840e-6
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = 1
Query:    4 VQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEH-QAQYNIERIGEVKKAEHRDD---HVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQLKQQKLKQPLKRALKARYALT 348
            V+ LVTGE    H  R++F+ADK+LEVT       + LEH  AQ  I R+ E+ +    D+   +   V W GL+  E +WE ++ +  D S +++A +   K    L+R L+A  A T
Sbjct:   68 VKQLVTGEELDVHASRLKFFADKDLEVTE------ELLEHVAAQGIILRVRELVRHRWNDESRSYEILVGWHGLEAIEDSWEPLTAMYNDVSTLVQAYVATAK-DSKLERHLEALEAST 179          
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A6G0Q1F2_9STRA (Chromo domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0Q1F2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.390e-5
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 1
Query:    4 VQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEH-QAQYNIERIGEVKKAEHRDD---HVFRVYWQGLDEGESTWELVSKVLVDASAVLRA 282
            V+ LVTGE    H  R++F+ADK+LEVT       + LEH  AQ  I R+ E+ +    D+   +   V W GL+  E +WE ++ +  D S +++A
Sbjct:   68 VKQLVTGEELDVHASRLKFFADKDLEVTE------ELLEHVAAQGIILRVRELVRHRWNDESRSYEILVGWHGLEAIEDSWEPLTAMYNDVSTLVQA 158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6A4ESP9_9STRA9.390e-938.05Chromo domain-containing protein (Fragment) n=1 Ta... [more]
A0A6A3LWQ0_9STRA3.950e-836.28Chromo domain-containing protein n=3 Tax=Phytophth... [more]
W4GEH4_9STRA4.820e-832.99Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A6A3HXT7_9STRA1.440e-738.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0MQU0_9STRA2.440e-738.78Chromo domain-containing protein n=2 Tax=Phytophth... [more]
W2IAR5_PHYPR3.220e-635.78Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
W2PQB6_PHYPN3.290e-635.78Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
A0A024TUZ8_9STRA3.340e-627.68Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A3GBI2_9STRA5.840e-635.29Chromo domain-containing protein n=5 Tax=Phytophth... [more]
A0A6G0Q1F2_9STRA1.390e-536.08Chromo domain-containing protein n=1 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59525contigH-paniculata_contig59525:266..619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930655.258199-CDS-H-paniculata_contig59525:265..6191622930655.258199-CDS-H-paniculata_contig59525:265..619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59525 266..619 +
1691481391.7453413-CDS-H-paniculata_contig59525:265..6191691481391.7453413-CDS-H-paniculata_contig59525:265..619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59525 266..619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59525.13596.1prot_H-paniculata_contig59525.13596.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59525 266..619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59525.13596.1

>prot_H-paniculata_contig59525.13596.1 ID=prot_H-paniculata_contig59525.13596.1|Name=mRNA_H-paniculata_contig59525.13596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
EVQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQAQYNIERI
GEVKKAEHRDDHVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQLKQQK
LKQPLKRALKARYALTV*
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mRNA from alignment at H-paniculata_contig59525:266..619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59525.13596.1 ID=mRNA_H-paniculata_contig59525.13596.1|Name=mRNA_H-paniculata_contig59525.13596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig59525:266..619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTTCAACACCTTGTGACGGGCGAAACGCGCTACGCCCATGTGATACG CATACGATTTTACGCGGACAAGGAATTGGAGGTAACCCGTCTCATGACCA AGGTGTTCCAGTACCTCGAACACCAAGCTCAATACAATATCGAGAGGATT GGAGAGGTGAAGAAGGCGGAGCATCGAGACGACCACGTGTTTCGTGTGTA TTGGCAGGGGTTGGACGAAGGGGAGAGCACGTGGGAGCTAGTGTCGAAGG TGTTGGTGGATGCATCGGCGGTGTTGCGTGCCCAGCTAAAACAACAGAAA CTAAAGCAGCCGCTGAAGAGAGCTTTGAAGGCGCGATATGCACTGACGGT ATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig59525:266..619+

>mRNA_H-paniculata_contig59525.13596.1 ID=mRNA_H-paniculata_contig59525.13596.1|Name=mRNA_H-paniculata_contig59525.13596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig59525:266..619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTTCAACACCTTGTGACGGGCGAAACGCGCTACGCCCATGTGATACG
CATACGATTTTACGCGGACAAGGAATTGGAGGTAACCCGTCTCATGACCA
AGGTGTTCCAGTACCTCGAACACCAAGCTCAATACAATATCGAGAGGATT
GGAGAGGTGAAGAAGGCGGAGCATCGAGACGACCACGTGTTTCGTGTGTA
TTGGCAGGGGTTGGACGAAGGGGAGAGCACGTGGGAGCTAGTGTCGAAGG
TGTTGGTGGATGCATCGGCGGTGTTGCGTGCCCAGCTAAAACAACAGAAA
CTAAAGCAGCCGCTGAAGAGAGCTTTGAAGGCGCGATATGCACTGACGGT
ATGAGAGGTTCAACACCTTGTGACGGGCGAAACGCGCTACGCCCATGTGA
TACGCATACGATTTTACGCGGACAAGGAATTGGAGGTAACCCGTCTCATG
ACCAAGGTGTTCCAGTACCTCGAACACCAAGCTCAATACAATATCGAGAG
GATTGGAGAGGTGAAGAAGGCGGAGCATCGAGACGACCACGTGTTTCGTG
TGTATTGGCAGGGGTTGGACGAAGGGGAGAGCACGTGGGAGCTAGTGTCG
AAGGTGTTGGTGGATGCATCGGCGGTGTTGCGTGCCCAGCTAAAACAACA
GAAACTAAAGCAGCCGCTGAAGAGAGCTTTGAAGGCGCGATATGCACTGA
CGGTATGA
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