mRNA_H-paniculata_contig59525.13596.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A6A4ESP9_9STRA (Chromo domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4ESP9_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 9.390e-9 Identity = 43/113 (38.05%), Postives = 63/113 (55.75%), Query Frame = 1
Query: 1 EVQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEH-QAQYNIERIGEVKKAEHRDD---HVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQL---KQQKLKQPLK 318
+V+HLVTGE H R++F+ADK+LEVT + LEH AQ I R+ E+ + D + V W GL+ E +WE +S + D SA+++A + K KL+ LK
Sbjct: 7 KVKHLVTGEELDVHASRLKFFADKDLEVTE------ELLEHVAAQGIILRVRELIRHRWNDQSRSNEVLVGWHGLEAIEDSWEPLSAIYKDVSALVQAYVASAKDSKLEHHLK 113
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A6A3LWQ0_9STRA (Chromo domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LWQ0_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 3.950e-8 Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = 1
Query: 1 EVQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQA-QYNIERIGEVKKAEHRDD---HVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQL---KQQKLKQPLK 318
+V+HLVTGE H R++F+ DK+LEVT + LEH A Q I R+ E+ + D + V+W GL+ E +WE +S + D S +++A + K KL++ LK
Sbjct: 67 KVKHLVTGEELDVHASRLKFFVDKDLEVTE------ELLEHMAAQGIILRVRELIRNRWNDQSRSYEILVWWHGLEAIEDSWEPLSAMYKDVSTLVQAYVASAKDSKLERHLK 173
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: W4GEH4_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GEH4_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 4.820e-8 Identity = 32/97 (32.99%), Postives = 55/97 (56.70%), Query Frame = 1
Query: 4 VQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQAQYNI----ERIGEVKKAEHRDDHVFRVYWQGLDEGESTWELVSKVLVDASAVLRA 282
++HLVT E R AH R++ YA+ EVT + LEH ++ I + I K D + +V+W+G ++ ES+WE ++K++ + AV++A
Sbjct: 67 LEHLVTHEEREAHTARVKMYAETSFEVTE------EILEHVSEQGIVSQVKSIAGDKFVPDVSDFMLKVFWEGFEDIESSWEPLNKLMRECPAVVKA 157
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A6A3HXT7_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HXT7_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 1.440e-7 Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 1
Query: 1 EVQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEH-QAQYNIERIGEVKKAEHRDD---HVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQL---KQQKLKQPLK 318
+V+HLVTGE H R++F+ADK+LEVT + LEH AQ I R+ E+ + D + V W GL+ E +WE +S + D SA+++A + K KL++ LK
Sbjct: 618 KVKHLVTGEELDVHASRLKFFADKDLEVTE------ELLEHVAAQGIILRVRELIRHRWNDQSRSNEVLVGWHGLEAIEDSWEPLSAMYKDVSALVQAYVASAKDSKLERHLK 724
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A6G0MQU0_9STRA (Chromo domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MQU0_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 2.440e-7 Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 1
Query: 4 VQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQAQYNIERIGEVKKAEHR-----DDHVFRVYWQGLDEGESTWELVSKVLVDASAVLRA 282
+QHLVTG H R++FYAD LEV + LEH + I E KA HR DD+ V W+GL+E E ++EL++ + D SA++ A
Sbjct: 132 IQHLVTGAEMDVHASRLKFYADDSLEVNE------ELLEHISAQGIILAVEKLKA-HRWNPDIDDYEILVQWKGLEEIEDSYELLTSLAKDVSALVTA 222
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: W2IAR5_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2IAR5_PHYPR) HSP 1 Score: 54.7 bits (130), Expect = 3.220e-6 Identity = 39/109 (35.78%), Postives = 57/109 (52.29%), Query Frame = 1
Query: 4 VQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQAQYNIE-RIGEVKKAEHR-----DDHVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQLKQQKLKQP 312
++HLVTG H R++FYADK L VT + LEH A I I E+KK HR D+ V W+GL+ E +WEL++ + + +L +++Q K P
Sbjct: 637 IRHLVTGCELDVHESRLKFYADKNLNVTE------EILEHVASQGIILAINELKK--HRWNKSIKDYEVLVNWKGLESVEDSWELLTSLAKEVHVLLNQCIQKQGSKLP 737
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: W2PQB6_PHYPN (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PQB6_PHYPN) HSP 1 Score: 54.7 bits (130), Expect = 3.290e-6 Identity = 39/109 (35.78%), Postives = 57/109 (52.29%), Query Frame = 1
Query: 4 VQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQAQYNIE-RIGEVKKAEHR-----DDHVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQLKQQKLKQP 312
++HLVTG H R++FYADK L VT + LEH A I I E+KK HR D+ V W+GL+ E +WEL++ + + +L +++Q K P
Sbjct: 891 IRHLVTGCELDVHESRLKFYADKNLNVTE------EILEHVASQGIILAINELKK--HRWNKSIKDYEVLVNWKGLESVEDSWELLTSLAKEVHVLLNQCIQKQGSKLP 991
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A024TUZ8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUZ8_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 3.340e-6 Identity = 31/112 (27.68%), Postives = 62/112 (55.36%), Query Frame = 1
Query: 1 EVQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQAQ-YNIERIGEVKKAEHRDDHVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQLKQQKLKQPLKRALKA 333
+V++LVTGE R AH IR++FYAD++L+++ ++ H ++ + +E I + + ++ W+GL + E++WE + D + +A K++ +K+ KA
Sbjct: 1156 DVRNLVTGEQRPAHAIRLKFYADEDLQLSE---DFIDHVAHNSEGHEVEVIVSARYVPATKSYEVQIKWRGLRDVENSWEPAQNIQEDVPTMFKAFCKKRAKLAIVKKMAKA 1264
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A6A3GBI2_9STRA (Chromo domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GBI2_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 5.840e-6 Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = 1
Query: 4 VQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEH-QAQYNIERIGEVKKAEHRDD---HVFRVYWQGLDEGESTWELVSKVLVDASAVLRAQLKQQKLKQPLKRALKARYALT 348
V+ LVTGE H R++F+ADK+LEVT + LEH AQ I R+ E+ + D+ + V W GL+ E +WE ++ + D S +++A + K L+R L+A A T
Sbjct: 68 VKQLVTGEELDVHASRLKFFADKDLEVTE------ELLEHVAAQGIILRVRELVRHRWNDESRSYEILVGWHGLEAIEDSWEPLTAMYNDVSTLVQAYVATAK-DSKLERHLEALEAST 179
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Match: A0A6G0Q1F2_9STRA (Chromo domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0Q1F2_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 1.390e-5 Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 1
Query: 4 VQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEH-QAQYNIERIGEVKKAEHRDD---HVFRVYWQGLDEGESTWELVSKVLVDASAVLRA 282
V+ LVTGE H R++F+ADK+LEVT + LEH AQ I R+ E+ + D+ + V W GL+ E +WE ++ + D S +++A
Sbjct: 68 VKQLVTGEELDVHASRLKFFADKDLEVTE------ELLEHVAAQGIILRVRELVRHRWNDESRSYEILVGWHGLEAIEDSWEPLTAMYNDVSTLVQA 158 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59525.13596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig59525.13596.1 >prot_H-paniculata_contig59525.13596.1 ID=prot_H-paniculata_contig59525.13596.1|Name=mRNA_H-paniculata_contig59525.13596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp EVQHLVTGETRYAHVIRIRFYADKELEVTRLMTKVFQYLEHQAQYNIERIback to top mRNA from alignment at H-paniculata_contig59525:266..619+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig59525.13596.1 ID=mRNA_H-paniculata_contig59525.13596.1|Name=mRNA_H-paniculata_contig59525.13596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig59525:266..619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig59525:266..619+ >mRNA_H-paniculata_contig59525.13596.1 ID=mRNA_H-paniculata_contig59525.13596.1|Name=mRNA_H-paniculata_contig59525.13596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig59525:266..619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |