mRNA_H-paniculata_contig5950.13592.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5950.13592.1
Unique NamemRNA_H-paniculata_contig5950.13592.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5950.13592.1 vs. uniprot
Match: D7FKE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.380e-22
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   19 RDILAICHHGDILGIAAYREGENAIDIQETHAFQSDIADTLDAVKLSVRPSLILVDLTLATNQAVFGMVI 228
            RDILAIC  GD LGIAAYRE  NAIDIQE HAF SD+ DT++ +KL VRP LIL DL + TN A+F +V+
Sbjct:   52 RDILAICKLGDKLGIAAYREAINAIDIQEIHAFNSDMGDTMEGIKLLVRPRLILTDLAMTTNPALFDIVV 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5950.13592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKE0_ECTSI4.380e-2265.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5950contigH-paniculata_contig5950:9168..10371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size232
Cds size228
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5950.13592.1prot_H-paniculata_contig5950.13592.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5950 9170..10371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930654.9518955-CDS-H-paniculata_contig5950:9169..92861622930654.9518955-CDS-H-paniculata_contig5950:9169..9286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5950 9170..9286 -
1691481391.6028743-CDS-H-paniculata_contig5950:9169..92861691481391.6028743-CDS-H-paniculata_contig5950:9169..9286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5950 9170..9286 -
1622930654.9662647-CDS-H-paniculata_contig5950:9586..96281622930654.9662647-CDS-H-paniculata_contig5950:9586..9628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5950 9587..9628 -
1691481391.611709-CDS-H-paniculata_contig5950:9586..96281691481391.611709-CDS-H-paniculata_contig5950:9586..9628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5950 9587..9628 -
1622930654.997935-CDS-H-paniculata_contig5950:10302..103711622930654.997935-CDS-H-paniculata_contig5950:10302..10371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5950 10303..10371 -
1691481391.6206117-CDS-H-paniculata_contig5950:10302..103711691481391.6206117-CDS-H-paniculata_contig5950:10302..10371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5950 10303..10371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5950.13592.1

>prot_H-paniculata_contig5950.13592.1 ID=prot_H-paniculata_contig5950.13592.1|Name=mRNA_H-paniculata_contig5950.13592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
EPEGVTRDILAICHHGDILGIAAYREGENAIDIQETHAFQSDIADTLDAV
KLSVRPSLILVDLTLATNQAVFGMVI
back to top

mRNA from alignment at H-paniculata_contig5950:9168..10371-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5950.13592.1 ID=mRNA_H-paniculata_contig5950.13592.1|Name=mRNA_H-paniculata_contig5950.13592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1204bp|location=Sequence derived from alignment at H-paniculata_contig5950:9168..10371- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCGAAGGAGTTACTCGAGACATCTTGGCCATTTGCCACCATGGTGA
CATTCTGGGTATAGCCGCTGTGAGTGTGTGCAAAGTTCTTGTATCAATTA
AGTCGTCGGTGGACGCTTGGGTCAATCTCACACGGTAATGTTAGTCGGTG
CCGTAGCTCTGACGGGGGAAAAGTAGAACGACAAAGCTCGTGCATACATT
GCCTTTTTCATCAATTTCTGCCGGCCGAGACATAGAAAGGAAATCATTTG
GTGCTGGCCAGAGGTGAAGGTCACGTTTGCATCTATGTACAACAAGACGA
CCACAGAACTAATGTGCTATATTTTATCGCGCCATTGGTTCAGTTTACAG
CCATCCCCTAAGAGCTGCGGAAGCCAATTTCTTGGTATACCGGAAGTGCT
CCCGAAACCTTCCCCATCATTTCACGAAACTTTCCCCCCTTGGCATGCCT
TGCCTATTTACATGGCAACAATGCATTAGCGCTGTTGCAGAAACACGGAA
ATATTTCCGTGTACGATTGAATCTCAAACCACCATGATGTGTCATTGCAC
TACACTACGCCCCAGGTCGCTGCTATCTATCCATTATCAGCACTGTTTTC
CCAGCCTCAGAGAAAATGCCCCCTCGCCCTCGTTTCCCTCCCCTATTCGA
CACTTCGAGGATGATGATGCTATTCGGCCATTGTCAATCCCCTCCTTGTC
TCTCGTTCTGTCGCAAACGTGCGCTCTTTGTGTGCCCTTGCAGTATCGGG
AGGGAGAAAATGCCATTGATATTCAGGAGACCCATGTAAGAATCCCCCGA
CATTATAACTACGTGTATGGGTTATAGGGAACACATTGTGAAAACGTAAA
ATAGACGACTTTGGTTTCGATGCTCCCTAGCATGCACAACACGGTGAGAA
GGGTCGCAACGATTGAGGTCGAGAGGTATTGTCGAAAATTGGTGACAGCA
AGCCAAAGTATTCTCATACGACTGAAGCTAGCCCAACAAAACTCTGACAC
GGGGTAGTCTCCCCTGCCCCACGCCACCGCCCGATATTCTCCCCTTTGAT
CAATGTATATTGGTTCTTGTATGAACGACTGACAGGCGTTTCAATCAGAC
ATTGCTGATACCCTGGACGCGGTTAAGCTGAGTGTTCGTCCCTCTCTCAT
CCTTGTGGATCTGACTCTGGCTACTAATCAAGCCGTTTTCGGGATGGTGA
TCGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5950:9168..10371-

>mRNA_H-paniculata_contig5950.13592.1 ID=mRNA_H-paniculata_contig5950.13592.1|Name=mRNA_H-paniculata_contig5950.13592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig5950:9168..10371- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCGAAGGAGTTACTCGAGACATCTTGGCCATTTGCCACCATGGTGA
CATTCTGGGTATAGCCGCTGAGCCCGAAGGAGTTACTCGAGACATCTTGG
CCATTTGCCACCATGGTGACATTCTGGGTATAGCCGCTTATCGGGAGGGA
GAAAATGCCATTGATATTCAGGAGACCCATTATCGGGAGGGAGAAAATGC
CATTGATATTCAGGAGACCCATGCGTTTCAATCAGACATTGCTGATACCC
TGGACGCGGTTAAGCTGAGTGTTCGTCCCTCTCTCATCCTTGTGGATCTG
ACTCTGGCTACTAATCAAGCCGTTTTCGGGATGGTGATCGCGTTTCAATC
AGACATTGCTGATACCCTGGACGCGGTTAAGCTGAGTGTTCGTCCCTCTC
TCATCCTTGTGGATCTGACTCTGGCTACTAATCAAGCCGTTTTCGGGATG
GTGATC
back to top