mRNA_H-paniculata_contig5950.13593.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5950.13593.1
Unique NamemRNA_H-paniculata_contig5950.13593.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5950.13593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5950contigH-paniculata_contig5950:10574..11345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size232
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930654.8898618-CDS-H-paniculata_contig5950:10575..106091622930654.8898618-CDS-H-paniculata_contig5950:10575..10609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5950 10576..10609 -
1691481391.578397-CDS-H-paniculata_contig5950:10575..106091691481391.578397-CDS-H-paniculata_contig5950:10575..10609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5950 10576..10609 -
1622930654.9016628-CDS-H-paniculata_contig5950:11151..113451622930654.9016628-CDS-H-paniculata_contig5950:11151..11345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5950 11152..11345 -
1691481391.5925796-CDS-H-paniculata_contig5950:11151..113451691481391.5925796-CDS-H-paniculata_contig5950:11151..11345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5950 11152..11345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5950.13593.1prot_H-paniculata_contig5950.13593.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5950 10576..11345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5950.13593.1

>prot_H-paniculata_contig5950.13593.1 ID=prot_H-paniculata_contig5950.13593.1|Name=mRNA_H-paniculata_contig5950.13593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
GAESPLDPFIFTSPGTRNSSAASLSSASVTPVERNFGRYLELSQGRREVS
TGPITDAIAAAASKRSAEGPVVRPSP
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mRNA from alignment at H-paniculata_contig5950:10574..11345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5950.13593.1 ID=mRNA_H-paniculata_contig5950.13593.1|Name=mRNA_H-paniculata_contig5950.13593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=772bp|location=Sequence derived from alignment at H-paniculata_contig5950:10574..11345- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCAGAATCGCCGCTGGATCCATTCATATTTACGAGCCCTGGCACGCG
AAACAGCTCCGCTGCCAGCTTGTCGTCAGCTAGCGTTACGCCAGTGGAGA
GAAACTTTGGTCGCTACTTGGAGCTGTCACAGGGGCGACGGGAGGTATCG
ACCGGCCCTATCACGGATGCCATTGCCGCGGCAGCGTCAAAAAGGTGGTG
TAGTATATTGCCTCCATCAAACACATTCTTCGAGGCGGGATTAATTTGAT
GGATCGTATTCATTCTTGTGGGGTTAGGAAGTAGCATTGGAGAATCTCTA
GGCTAGATGTCACAGCATAACTTGTGCTGTCGAGGCTGAATATTTCCATG
CTTACCGTGAGTGGTTCCATTCTTCTACATACTGTCGACGTTCCAACTTT
GAACCTTCCCAGCTGTCGTCAAGCAACATCGCGAGATCGCGTGTGCGCCT
AACCAGATTTCTGTCCACCATGTGTGAAGTAGCCTTAGGTCGAGAAATTA
TGCTCATCAGCACAGGTTAGGACGCAGGAGAGCACCGTTGTCGAGGTCGT
CCGGGACAACCCCGGGAGAATATTCTCGAAACTGCCAGCATTATGAAATG
TATTCCGTCCCTTCAAGAATACATCGCTGGGAGACAAGCCAAGTACAGTA
GCTACTGGACAACACTCTCCTTTCCCCTTCCACCCCGCCCTGCTCTTAGC
TTCTACCCCTGACCATACTCACATGGAATAAAACAGGTCGGCCGAAGGAC
CGGTAGTCCGACCTTCTCCCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig5950:10574..11345-

>mRNA_H-paniculata_contig5950.13593.1 ID=mRNA_H-paniculata_contig5950.13593.1|Name=mRNA_H-paniculata_contig5950.13593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig5950:10574..11345- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCAGAATCGCCGCTGGATCCATTCATATTTACGAGCCCTGGCACGCG
AAACAGCTCCGCTGCCAGCTTGTCGTCAGCTAGCGTTACGCCAGTGGAGA
GAAACTTTGGTCGCTACTTGGAGCTGTCACAGGGGCGACGGGAGGTATCG
ACCGGCCCTATCACGGATGCCATTGCCGCGGCAGCGTCAAAAAGGGTGCA
GAATCGCCGCTGGATCCATTCATATTTACGAGCCCTGGCACGCGAAACAG
CTCCGCTGCCAGCTTGTCGTCAGCTAGCGTTACGCCAGTGGAGAGAAACT
TTGGTCGCTACTTGGAGCTGTCACAGGGGCGACGGGAGGTATCGACCGGC
CCTATCACGGATGCCATTGCCGCGGCAGCGTCAAAAAGGTCGGCCGAAGG
ACCGGTAGTCCGACCTTCTCCCGTCGGCCGAAGGACCGGTAGTCCGACCT
TCTCCC
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