mRNA_H-paniculata_contig59489.13586.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59489.13586.1
Unique NamemRNA_H-paniculata_contig59489.13586.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.680e-15
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:   31 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVG--GVLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 249
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   +LTFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  212 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQ 286
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BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.410e-14
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   31 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGG--VLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 249
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   + TFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  191 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQ 265
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BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.410e-14
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   31 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGG--VLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 249
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   + TFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  463 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQ 537
[Close]
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.420e-14
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   31 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGG--VLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 249
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   + TFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  527 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQ 601
[Close]
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.420e-14
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   31 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGG--VLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 249
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   + TFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  671 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQ 745
[Close]
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.440e-14
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   31 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGG--VLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 249
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   + TFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  877 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQ 951
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BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5L6C0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.470e-13
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   31 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGG--VLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 249
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   + TFSPT  A + R+  A AC    ++LH+D+E+AFVQ
Sbjct:  224 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAFACKYNMELLHLDIEEAFVQ 298
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BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5KLE6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.180e-12
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   31 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGGVL--TFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 249
            ID++WV++WK +E   ++KAKARLV +G  Q+ G     TFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:   60 IDARWVYKWKANETGKILKAKARLVAKGFKQKHGVDYFETFSPTAHAASIRLLVALACKYDLELLHLDIEQAFVQ 134
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BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A0P1BQ67_9BASI (FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations n=1 Tax=Ceraceosorus bombacis TaxID=401625 RepID=A0A0P1BQ67_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 1.040e-7
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:   31 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGGVLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFV 246
            I S+WV+ WK+DEH ++V+ KAR+V RGD Q      T++P     + RV A++A  L   +   D + A++
Sbjct:  204 IHSRWVYTWKVDEHGNIVRFKARIVARGDQQSANAANTYAPVASMASWRVLASIATHLNWPIHQTDFDTAYL 275
[Close]
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5KDR1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.590e-7
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   79 VVKAKARLVFRGDNQEVG--GVLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 249
            + KAKARLV +G  Q+ G   +LTFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  236 ITKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLLALACQYNLELLHLDIEQAFVQ 294
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPV1_9PHAE3.680e-1554.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE2.410e-1453.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDZ0_9PHAE2.410e-1453.33CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE2.420e-1453.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE2.420e-1453.33CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE2.440e-1453.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6C0_9PHAE1.470e-1350.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KLE6_9PHAE1.180e-1249.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0P1BQ67_9BASI1.040e-737.50FOG: Transposon-encoded proteins with TYA, reverse... [more]
A0A6H5KDR1_9PHAE2.590e-752.54Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59489contigH-paniculata_contig59489:727..975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930653.7731035-CDS-H-paniculata_contig59489:726..9751622930653.7731035-CDS-H-paniculata_contig59489:726..975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59489 727..975 +
1691481391.027739-CDS-H-paniculata_contig59489:726..9751691481391.027739-CDS-H-paniculata_contig59489:726..975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59489 727..975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59489.13586.1prot_H-paniculata_contig59489.13586.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59489 727..975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59489.13586.1

>prot_H-paniculata_contig59489.13586.1 ID=prot_H-paniculata_contig59489.13586.1|Name=mRNA_H-paniculata_contig59489.13586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
VDDLSDEESPIDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGGVLTFS
PTPPATTNRVAAALACALGRKMLHIDVEQAFVQ
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mRNA from alignment at H-paniculata_contig59489:727..975+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59489.13586.1 ID=mRNA_H-paniculata_contig59489.13586.1|Name=mRNA_H-paniculata_contig59489.13586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig59489:727..975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGACGATCTCTCAGATGAAGAATCTCCGATCGACTCAAAATGGGTTTT
TCGGTGGAAAATCGACGAACACGTGCATGTCGTGAAAGCCAAGGCACGGT
TGGTTTTCAGAGGCGACAATCAGGAGGTAGGCGGAGTTTTGACGTTCTCT
CCTACCCCCCCTGCAACCACTAACAGAGTAGCCGCAGCTTTAGCATGTGC
GCTGGGAAGAAAGATGCTTCATATTGATGTCGAGCAGGCTTTCGTACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig59489:727..975+

>mRNA_H-paniculata_contig59489.13586.1 ID=mRNA_H-paniculata_contig59489.13586.1|Name=mRNA_H-paniculata_contig59489.13586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig59489:727..975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGACGATCTCTCAGATGAAGAATCTCCGATCGACTCAAAATGGGTTTT
TCGGTGGAAAATCGACGAACACGTGCATGTCGTGAAAGCCAAGGCACGGT
TGGTTTTCAGAGGCGACAATCAGGAGGTAGGCGGAGTTTTGACGTTCTCT
CCTACCCCCCCTGCAACCACTAACAGAGTAGCCGCAGCTTTAGCATGTGC
GCTGGGAAGAAAGATGCTTCATATTGATGTCGAGCAGGCTTTCGTACAGG
TAGACGATCTCTCAGATGAAGAATCTCCGATCGACTCAAAATGGGTTTTT
CGGTGGAAAATCGACGAACACGTGCATGTCGTGAAAGCCAAGGCACGGTT
GGTTTTCAGAGGCGACAATCAGGAGGTAGGCGGAGTTTTGACGTTCTCTC
CTACCCCCCCTGCAACCACTAACAGAGTAGCCGCAGCTTTAGCATGTGCG
CTGGGAAGAAAGATGCTTCATATTGATGTCGAGCAGGCTTTCGTACAG
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