prot_H-paniculata_contig59479.13585.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig59479.13585.1
Unique Nameprot_H-paniculata_contig59479.13585.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length61
Homology
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BLAST of mRNA_H-paniculata_contig59479.13585.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.700e-8
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 0 
Query:    1 VAVEYSEERPPLLGTTGMASSIITFARNSSRRQMGTDVRTE 41
            V VEY EERPPLLG+TGMAS+IITF R+SSRR +G   R E
Sbjct:  627 VVVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIERRE 667
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59479.13585.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIW7_ECTSI1.700e-870.73Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022591Transcription initiation factor TFIID subunit 1, domain of unknown functionPFAMPF12157DUF3591coord: 1..33
e-value: 7.0E-7
score: 28.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59479contigH-paniculata_contig59479:522..704 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59479.13585.1mRNA_H-paniculata_contig59479.13585.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig59479 522..704 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig59479.13585.1 ID=prot_H-paniculata_contig59479.13585.1|Name=mRNA_H-paniculata_contig59479.13585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
VAVEYSEERPPLLGTTGMASSIITFARNSSRRQMGTDVRTEECDCCSRGG
CGTTRFLPSLH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022591TFIID_sub1_DUF3591