mRNA_H-paniculata_contig59479.13585.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59479.13585.1
Unique NamemRNA_H-paniculata_contig59479.13585.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59479.13585.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.700e-8
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 VAVEYSEERPPLLGTTGMASSIITFARNSSRRQMGTDVRTE 123
            V VEY EERPPLLG+TGMAS+IITF R+SSRR +G   R E
Sbjct:  627 VVVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIERRE 667
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59479.13585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIW7_ECTSI1.700e-870.73Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59479contigH-paniculata_contig59479:522..704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930653.7281027-CDS-H-paniculata_contig59479:521..7041622930653.7281027-CDS-H-paniculata_contig59479:521..704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59479 522..704 -
1691481391.0096815-CDS-H-paniculata_contig59479:521..7041691481391.0096815-CDS-H-paniculata_contig59479:521..704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59479 522..704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59479.13585.1prot_H-paniculata_contig59479.13585.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59479 522..704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59479.13585.1

>prot_H-paniculata_contig59479.13585.1 ID=prot_H-paniculata_contig59479.13585.1|Name=mRNA_H-paniculata_contig59479.13585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
VAVEYSEERPPLLGTTGMASSIITFARNSSRRQMGTDVRTEECDCCSRGG
CGTTRFLPSLH
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mRNA from alignment at H-paniculata_contig59479:522..704-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59479.13585.1 ID=mRNA_H-paniculata_contig59479.13585.1|Name=mRNA_H-paniculata_contig59479.13585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig59479:522..704- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCAGTGGAGTACTCCGAGGAGCGTCCGCCGTTGTTGGGCACCACCGG
TATGGCGAGCAGCATTATTACCTTTGCCAGGAACAGTAGTCGCCGGCAGA
TGGGCACAGATGTGAGGACTGAGGAGTGTGATTGCTGTAGTCGGGGGGGT
TGCGGCACCACGCGTTTTCTCCCGTCACTCCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig59479:522..704-

>mRNA_H-paniculata_contig59479.13585.1 ID=mRNA_H-paniculata_contig59479.13585.1|Name=mRNA_H-paniculata_contig59479.13585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig59479:522..704- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCAGTGGAGTACTCCGAGGAGCGTCCGCCGTTGTTGGGCACCACCGG
TATGGCGAGCAGCATTATTACCTTTGCCAGGAACAGTAGTCGCCGGCAGA
TGGGCACAGATGTGAGGACTGAGGAGTGTGATTGCTGTAGTCGGGGGGGT
TGCGGCACCACGCGTTTTCTCCCGTCACTCCACGTGGCAGTGGAGTACTC
CGAGGAGCGTCCGCCGTTGTTGGGCACCACCGGTATGGCGAGCAGCATTA
TTACCTTTGCCAGGAACAGTAGTCGCCGGCAGATGGGCACAGATGTGAGG
ACTGAGGAGTGTGATTGCTGTAGTCGGGGGGGTTGCGGCACCACGCGTTT
TCTCCCGTCACTCCAC
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