mRNA_H-paniculata_contig5947.13584.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5947.13584.1
Unique NamemRNA_H-paniculata_contig5947.13584.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5947.13584.1 vs. uniprot
Match: D8LSX9_ECTSI (Kynurenine 3-Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX9_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.800e-9
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   22 GRIATFQGSDGEIINRGYDMLVGADGVNSKVRSELVAKVPDF 147
            GR+A F+  +G+++  GYDMLVGADGVNS+VR  L   VPDF
Sbjct:   12 GRVAIFERGNGDVVEVGYDMLVGADGVNSRVRKSLEESVPDF 53
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BLAST of mRNA_H-paniculata_contig5947.13584.1 vs. uniprot
Match: D7FRA5_ECTSI (Kynurenine 3-Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA5_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.360e-8
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   25 RIATFQGSDGEIINRGYDMLVGADGVNSKVRSELVAKVPDF 147
            R+ATF+  +G+++   YDML+GADGVNS+VR EL   VPDF
Sbjct:  145 RVATFERGNGDVVESEYDMLIGADGVNSRVRKELEENVPDF 185
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BLAST of mRNA_H-paniculata_contig5947.13584.1 vs. uniprot
Match: I0YYM5_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YYM5_COCSC)

HSP 1 Score: 49.7 bits (117), Expect = 1.330e-5
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 CLDLWISGRIATFQGSDGEIINRGYDMLVGADGVNSKVRSELVAKVPDF 147
            C ++ + G+ A F    G  ++  YD+LVGADGVNSKVR+EL  ++  F
Sbjct:   65 CKEVNVKGQQAIFTDESGNAVHVNYDLLVGADGVNSKVRAELQRQIAGF 113
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BLAST of mRNA_H-paniculata_contig5947.13584.1 vs. uniprot
Match: A0A8J9WN94_9CHLO (Kynurenine 3-monooxygenase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WN94_9CHLO)

HSP 1 Score: 48.1 bits (113), Expect = 4.690e-5
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 CLDLWISGRIATFQGSDGEIINRGYDMLVGADGVNSKVRSELVAKVPDF 147
            C ++ +  R   F  + GE +   YD+LVGADGVNSKVR+EL  +V  F
Sbjct:  216 CKEVNVKERQVQFTDASGETVRVDYDLLVGADGVNSKVRAELQRQVVGF 264
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5947.13584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSX9_ECTSI1.800e-959.52Kynurenine 3-Monooxygenase n=1 Tax=Ectocarpus sili... [more]
D7FRA5_ECTSI1.360e-858.54Kynurenine 3-Monooxygenase n=1 Tax=Ectocarpus sili... [more]
I0YYM5_COCSC1.330e-544.90Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A8J9WN94_9CHLO4.690e-546.94Kynurenine 3-monooxygenase n=1 Tax=Coccomyxa sp. O... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5947contigH-paniculata_contig5947:13006..13152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930653.6833053-CDS-H-paniculata_contig5947:13005..131521622930653.6833053-CDS-H-paniculata_contig5947:13005..13152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5947 13006..13152 +
1691481390.998308-CDS-H-paniculata_contig5947:13005..131521691481390.998308-CDS-H-paniculata_contig5947:13005..13152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5947 13006..13152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5947.13584.1prot_H-paniculata_contig5947.13584.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5947 13006..13152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5947.13584.1

>prot_H-paniculata_contig5947.13584.1 ID=prot_H-paniculata_contig5947.13584.1|Name=mRNA_H-paniculata_contig5947.13584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
CLDLWISGRIATFQGSDGEIINRGYDMLVGADGVNSKVRSELVAKVPDF
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mRNA from alignment at H-paniculata_contig5947:13006..13152+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5947.13584.1 ID=mRNA_H-paniculata_contig5947.13584.1|Name=mRNA_H-paniculata_contig5947.13584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig5947:13006..13152+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCCTTGATCTTTGGATATCTGGCAGAATTGCTACATTCCAAGGCAGTGA
TGGGGAGATCATCAATCGCGGTTATGACATGTTGGTGGGCGCCGATGGAG
TGAACAGTAAAGTACGATCAGAGCTCGTCGCCAAGGTGCCTGACTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig5947:13006..13152+

>mRNA_H-paniculata_contig5947.13584.1 ID=mRNA_H-paniculata_contig5947.13584.1|Name=mRNA_H-paniculata_contig5947.13584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig5947:13006..13152+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCCTTGATCTTTGGATATCTGGCAGAATTGCTACATTCCAAGGCAGTGA
TGGGGAGATCATCAATCGCGGTTATGACATGTTGGTGGGCGCCGATGGAG
TGAACAGTAAAGTACGATCAGAGCTCGTCGCCAAGGTGCCTGACTTCTGC
CTTGATCTTTGGATATCTGGCAGAATTGCTACATTCCAAGGCAGTGATGG
GGAGATCATCAATCGCGGTTATGACATGTTGGTGGGCGCCGATGGAGTGA
ACAGTAAAGTACGATCAGAGCTCGTCGCCAAGGTGCCTGACTTC
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