prot_H-paniculata_contig5944.13580.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5944.13580.1
Unique Nameprot_H-paniculata_contig5944.13580.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length580
Homology
BLAST of mRNA_H-paniculata_contig5944.13580.1 vs. uniprot
Match: D8LNZ2_ECTSI (Exonuclease domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ2_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 3.600e-95
Identity = 237/525 (45.14%), Postives = 294/525 (56.00%), Query Frame = 0
Query:   88 VRNPPAVRGVLVLAVVGVAATAPPETIRLDGD--GMDLGDLAENTPSPIDCRELHERM-LDGFSVGFKSRFRLCTALRISNGG----GGGGSTHVAGDG--------------------WLKSLADALLYAPLGEDTEACPDGPFVDKKRKSTGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADAEHDGDGVEEDGVEMELKAAEKVVSGKGDAGGGSCNGKSQDVLQVERRPSEQNTEQERSAKNGNDEEFDEHGLVSSDEGDE------DEGDDNQDANLPPIEAYLVMPVELKENGFPLPPEPFSTASPDAVEEVGNDHTPIPMLVRHTLCVGDDGNFSMKIPTLEEANEVINALPELPDLPGHVQTQPLLVGSEDSSTEGNRDEGAVRTFGLDCEMCITKEGQELTRVTLVNAEHKVLLDCLVKPENHITDYVSRYSGITALMLENVDTRLRQVQAALLRVIGAGDVLVGHSLENDLKALKMVHLRCLDTALLYPHPKKGRRSSLKYLVSM 579
            +RN PAVR VLV+A+ G A +APP+  + DG+   +D  +     PS      +     LDGF+  FK +FRLC  LRIS+GG       G   V  DG                    WLKSLADA LYAPLGED EACP GPF   K++     XXXXXXXXXXXXXXXXX                   A  + +G G+ +       +  EK   G GDA        S    +  + P+    +    A++G+ E                     +EG D  D  LP +E Y++   +L+E+GFP+        S  A +E   +HTP+           D  + ++ +PT EEA  ++    +L DL GHVQTQPL   S+    E        R FGLDCEMC+T  GQELTRVTLV+++HKV+LD LVKPENHI DYV+RYSGIT  +LENVDTRLRQVQAA+LRV+G  DVLVGHSLENDLKALKMVHLRCLDT+LLYPHPKKGRRSSL+YLVSM
Sbjct:    1 MRNLPAVRAVLVVALTGAATSAPPQR-KADGEDSAIDAAESLTVPPSAATAAAVAPNSPLDGFTEEFKRKFRLCAGLRISSGGFSVGPADGGAAVPSDGXXXXXXXXXXXXXXXXXXXXWLKSLADAFLYAPLGEDREACPAGPFSGSKKRXXXXXXXXXXXXXXXXXXXXXXEAENVRQQRSMESGVAEAIA-PQVNGPGIADGNSSQREEVEEKGTQG-GDADDSLAAAPSGGKREGVQEPTVTAMDTAAEAEDGDREXXXXXXXXXXXXXXXXXXXXVEEGSD--DPPLPAVETYILSVEKLREHGFPV--------SYPAEKEEEVNHTPL-----------DRVSGNVVLPTKEEAEGIVGRASKLVDLEGHVQTQPL---SDAGVAEEGEAAAGARLFGLDCEMCVTGAGQELTRVTLVDSQHKVVLDELVKPENHIVDYVTRYSGITPQLLENVDTRLRQVQAAVLRVVGVRDVLVGHSLENDLKALKMVHLRCLDTSLLYPHPKKGRRSSLRYLVSM 498          
BLAST of mRNA_H-paniculata_contig5944.13580.1 vs. uniprot
Match: A0A835ZA27_9STRA (Exonuclease domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA27_9STRA)

HSP 1 Score: 157 bits (396), Expect = 7.380e-37
Identity = 76/122 (62.30%), Postives = 98/122 (80.33%), Query Frame = 0
Query:  456 RTFGLDCEMCITKEGQELTRVTLVNAEHKVLLDCLVKPENHITDYVSRYSGITALMLENVDTRLRQVQAALLRVIGAGDVLVGHSLENDLKALKMVHLRCLDTALLYPHPKKGRRSSLKYLV 577
            R FGLDCEMC T +G EL RVTLV+ EH VLLD LVKP N ITD+++R+SGI+A ML+ + TRL QVQA LL ++   D+LVGHSLENDL+AL+++H RCLDT++L+PHPK G++ SL+ L 
Sbjct:  400 RLFGLDCEMCQTCDGLELCRVTLVDEEHCVLLDELVKPANAITDHMTRWSGISAQMLQPIATRLCQVQARLLSIVDCRDLLVGHSLENDLRALQLIHERCLDTSILFPHPKSGKKCSLRSLA 521          
BLAST of mRNA_H-paniculata_contig5944.13580.1 vs. uniprot
Match: A0A7S1SV13_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SV13_9CHLO)

HSP 1 Score: 134 bits (336), Expect = 2.660e-33
Identity = 67/120 (55.83%), Postives = 86/120 (71.67%), Query Frame = 0
Query:  458 FGLDCEMCITKEGQELTRVTLVNAEHKVLLDCLVKPENHITDYVSRYSGITALMLENVDTRLRQVQAALLRVIGAGDVLVGHSLENDLKALKMVHLRCLDTALLYPHPK-KGRRSSLKYL 576
             GLDCEMCIT  G ELTRVTLVN    V++D LVKP N I DY +R+SGIT  ML  V T L   +A +++V+    +LVGH L+NDL+AL+++H  CLDT++LYPHPK    RS+L+YL
Sbjct:    9 MGLDCEMCITAAGLELTRVTLVNEHDTVVVDELVKPSNPILDYNTRFSGITEDMLSGVTTSLEDARAKVIKVVKDTTMLVGHGLDNDLRALRLLHANCLDTSILYPHPKGPPARSALRYL 128          
BLAST of mRNA_H-paniculata_contig5944.13580.1 vs. uniprot
Match: I0Z456_COCSC (Exonuclease domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z456_COCSC)

HSP 1 Score: 135 bits (339), Expect = 2.230e-32
Identity = 68/121 (56.20%), Postives = 90/121 (74.38%), Query Frame = 0
Query:  458 FGLDCEMCITKEGQELTRVTLVNAEHKVLLDCLVKPENHITDYVSRYSGITALMLENVDTRLRQVQAALLRVIGAGDVLVGHSLENDLKALKMVHLRCLDTALLYPHPK-KGRRSSLKYLV 577
             GLDCEMC+T+EG ELTR++LV+ + +V+LD LV P+N ITDY +RYSGITA ML  V TRL  +Q   L ++ A  +LVGH+L+NDL+ALK++H   +DTA LYPHPK    RS+L+ L 
Sbjct:   86 IGLDCEMCVTEEGFELTRISLVDHQGQVMLDQLVVPDNPITDYNTRYSGITAEMLAPVTTRLADIQVKFLELVPAEALLVGHALQNDLRALKILHANIIDTAFLYPHPKGPPYRSALRKLT 206          
BLAST of mRNA_H-paniculata_contig5944.13580.1 vs. uniprot
Match: A0A7J7QNE5_9CHLO (Ribonuclease H-like domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QNE5_9CHLO)

HSP 1 Score: 139 bits (350), Expect = 3.170e-32
Identity = 74/121 (61.16%), Postives = 87/121 (71.90%), Query Frame = 0
Query:  459 GLDCEMCITKEGQELTRVTLVNAEHKVLLDCLVKPENHITDYVSRYSGITALMLENVDTRLRQVQAALLRVIGAGDVLVGHSLENDLKALKMVHLRCLDTALLYPHPK-KGRRSSLKYLVS 578
            GLDCEMCIT +G ELTR TLV+A   VLLD LV P N ITDY +RYSGITA MLE V TRL  VQ  ++R +    +LVGHSL+NDL ALKM H R LDT  L+PHP+    +SSL+YL +
Sbjct:    3 GLDCEMCITAQGYELTRCTLVDAGGAVLLDELVVPHNPITDYNTRYSGITAAMLEGVSTRLEDVQRMVMRHVQPHTLLVGHSLDNDLAALKMCHCRVLDTVALFPHPRGPPYKSSLRYLAT 123          
BLAST of mRNA_H-paniculata_contig5944.13580.1 vs. uniprot
Match: A0A1S4C5K4_TOBAC (small RNA degrading nuclease 5-like isoform X2 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4C5K4_TOBAC)

HSP 1 Score: 136 bits (343), Expect = 4.270e-32
Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = 0
Query:  458 FGLDCEMCITKEGQELTRVTLVNAEHKVLLDCLVKPENHITDYVSRYSGITALMLENVDTRLRQVQAALLRVIGAGDVLVGHSLENDLKALKMVHLRCLDTALLYPHPKKGRRSSLKYL 576
              LDCEMCIT+EG ELTRVTLV+ + +VLLD LVKP N I DY +RYSGIT  MLE+V T L+ +Q   L+++    +LVGHSLENDL ALK++H   +DTA+LY HP+   +++L+ L
Sbjct:  177 LALDCEMCITREGFELTRVTLVDVKGQVLLDKLVKPSNDIVDYNTRYSGITCQMLEDVTTTLKDIQEEFLKLVHKETILVGHSLENDLLALKIIHNLVIDTAVLYKHPRGSYKAALRVL 295          
BLAST of mRNA_H-paniculata_contig5944.13580.1 vs. uniprot
Match: A0A1S4C513_TOBAC (small RNA degrading nuclease 5-like isoform X1 n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1S4C513_TOBAC)

HSP 1 Score: 136 bits (343), Expect = 9.750e-32
Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = 0
Query:  458 FGLDCEMCITKEGQELTRVTLVNAEHKVLLDCLVKPENHITDYVSRYSGITALMLENVDTRLRQVQAALLRVIGAGDVLVGHSLENDLKALKMVHLRCLDTALLYPHPKKGRRSSLKYL 576
              LDCEMCIT+EG ELTRVTLV+ + +VLLD LVKP N I DY +RYSGIT  MLE+V T L+ +Q   L+++    +LVGHSLENDL ALK++H   +DTA+LY HP+   +++L+ L
Sbjct:  218 LALDCEMCITREGFELTRVTLVDVKGQVLLDKLVKPSNDIVDYNTRYSGITCQMLEDVTTTLKDIQEEFLKLVHKETILVGHSLENDLLALKIIHNLVIDTAVLYKHPRGSYKAALRVL 336          
BLAST of mRNA_H-paniculata_contig5944.13580.1 vs. uniprot
Match: A0A250XH78_9CHLO (Exonuclease domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XH78_9CHLO)

HSP 1 Score: 140 bits (352), Expect = 2.730e-31
Identity = 74/126 (58.73%), Postives = 90/126 (71.43%), Query Frame = 0
Query:  453 GAVRTFGLDCEMCITKEGQELTRVTLVNAEHKVLLDCLVKPENHITDYVSRYSGITALMLENVDTRLRQVQAALLRVIGAGDVLVGHSLENDLKALKMVHLRCLDTALLYPHPKK-GRRSSLKYLV 577
            GA R   +DCEMCIT +G ELTR+TLV+ E +VL+D LV P N ITDY +RYSGIT  ML +  TRL  VQ    + + +  +LVGHSLENDL+ALK+VH R LDTA+LYPHPK    RSSL+ L 
Sbjct:  353 GAERLVAMDCEMCITDQGFELTRITLVDVEGRVLMDQLVLPRNIITDYNTRYSGITEEMLRDCKTRLEHVQERFFQHVSSETLLVGHSLENDLRALKVVHSRVLDTAVLYPHPKGLPFRSSLRVLA 478          
BLAST of mRNA_H-paniculata_contig5944.13580.1 vs. uniprot
Match: A0A383V4P9_TETOB (Exonuclease domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V4P9_TETOB)

HSP 1 Score: 140 bits (352), Expect = 3.010e-31
Identity = 77/126 (61.11%), Postives = 87/126 (69.05%), Query Frame = 0
Query:  454 AVRTFGLDCEMCITKEGQELTRVTLVNAEHKVLLDCLVKPENHITDYVSRYSGITALMLENVDTRLRQVQAALLRVIGAGDVLVGHSLENDLKALKMVHLRCLDTALLYPHPK-KGRRSSLKYLVS 578
            A    GLDCEMCIT EG ELTR TLV+A   VLLD LV P N ITDY +RYSGITA MLE V TRL  VQ  + R +    +LVGHSL+NDL ALKM H R LDT  L+PHP+    +SSL+YL S
Sbjct:  380 AHNMVGLDCEMCITAEGFELTRCTLVDAAGSVLLDELVVPHNTITDYNTRYSGITAAMLEGVTTRLEDVQRMVKRHVKPHTLLVGHSLDNDLAALKMCHCRVLDTVALFPHPRGPPYKSSLRYLAS 505          
BLAST of mRNA_H-paniculata_contig5944.13580.1 vs. uniprot
Match: A0A0D2ZVP3_BRAOL (Exonuclease domain-containing protein n=15 Tax=Brassiceae TaxID=981071 RepID=A0A0D2ZVP3_BRAOL)

HSP 1 Score: 137 bits (344), Expect = 1.010e-30
Identity = 68/111 (61.26%), Postives = 84/111 (75.68%), Query Frame = 0
Query:  458 FGLDCEMCITKEGQELTRVTLVNAEHKVLLDCLVKPENHITDYVSRYSGITALMLENVDTRLRQVQAALLRVIGAGDVLVGHSLENDLKALKMVHLRCLDTALLYPHPKKG 568
              LDCEMCITK+G ELTRVTLV+ E +VLLD LVKP NHITDY +RYSGITA M+E V T +R +Q   L+++    VLVGHSLENDL ++K+ H   +DTA+LY HP+ G
Sbjct:  213 LALDCEMCITKDGFELTRVTLVDIEGQVLLDKLVKPTNHITDYNTRYSGITAEMMEGVTTTIRDIQEEFLKLVFKETVLVGHSLENDLVSMKISHDLVIDTAVLYKHPRGG 323          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5944.13580.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNZ2_ECTSI3.600e-9545.14Exonuclease domain-containing protein n=2 Tax=Ecto... [more]
A0A835ZA27_9STRA7.380e-3762.30Exonuclease domain-containing protein n=1 Tax=Trib... [more]
A0A7S1SV13_9CHLO2.660e-3355.83Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
I0Z456_COCSC2.230e-3256.20Exonuclease domain-containing protein n=1 Tax=Cocc... [more]
A0A7J7QNE5_9CHLO3.170e-3261.16Ribonuclease H-like domain-containing protein n=1 ... [more]
A0A1S4C5K4_TOBAC4.270e-3256.30small RNA degrading nuclease 5-like isoform X2 n=1... [more]
A0A1S4C513_TOBAC9.750e-3256.30small RNA degrading nuclease 5-like isoform X1 n=4... [more]
A0A250XH78_9CHLO2.730e-3158.73Exonuclease domain-containing protein n=1 Tax=Chla... [more]
A0A383V4P9_TETOB3.010e-3161.11Exonuclease domain-containing protein n=1 Tax=Tetr... [more]
A0A0D2ZVP3_BRAOL1.010e-3061.26Exonuclease domain-containing protein n=15 Tax=Bra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013520Exonuclease, RNase T/DNA polymerase IIISMARTSM00479exoiiienduscoord: 456..578
e-value: 1.5E-11
score: 54.3
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 460..556
e-value: 6.0E-6
score: 26.9
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 455..579
e-value: 4.9E-34
score: 119.3
NoneNo IPR availablePANTHERPTHR12801:SF115FI18136P1coord: 62..577
NoneNo IPR availablePANTHERPTHR12801EXONUCLEASEcoord: 62..577
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 450..577

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5944contigH-paniculata_contig5944:9576..13004 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5944.13580.1mRNA_H-paniculata_contig5944.13580.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5944 9576..13004 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5944.13580.1 ID=prot_H-paniculata_contig5944.13580.1|Name=mRNA_H-paniculata_contig5944.13580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=580bp
MSGSLAKPLGAGDTKKIRRMRKKLEGKASGGSITTPDLLRQCLDVGVSVR
PILTTHMERHGPTLSAKEARQLVLHCASGSSPPKFAEVRNPPAVRGVLVL
AVVGVAATAPPETIRLDGDGMDLGDLAENTPSPIDCRELHERMLDGFSVG
FKSRFRLCTALRISNGGGGGGSTHVAGDGWLKSLADALLYAPLGEDTEAC
PDGPFVDKKRKSTGGRGKGSKKKKRTKGDAKRRRREGSGKDSDSDEEGEQ
TAADAEHDGDGVEEDGVEMELKAAEKVVSGKGDAGGGSCNGKSQDVLQVE
RRPSEQNTEQERSAKNGNDEEFDEHGLVSSDEGDEDEGDDNQDANLPPIE
AYLVMPVELKENGFPLPPEPFSTASPDAVEEVGNDHTPIPMLVRHTLCVG
DDGNFSMKIPTLEEANEVINALPELPDLPGHVQTQPLLVGSEDSSTEGNR
DEGAVRTFGLDCEMCITKEGQELTRVTLVNAEHKVLLDCLVKPENHITDY
VSRYSGITALMLENVDTRLRQVQAALLRVIGAGDVLVGHSLENDLKALKM
VHLRCLDTALLYPHPKKGRRSSLKYLVSM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf