|
|
Homology
BLAST of mRNA_H-paniculata_contig5944.13579.1 vs. uniprot
Match: D8LNZ1_ECTSI (PDCD2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ1_ECTSI) HSP 1 Score: 334 bits (857), Expect = 5.770e-98 Identity = 230/546 (42.12%), Postives = 288/546 (52.75%), Query Frame = 2
Query: 1475 AWFGQAPVSTGDLVCRLCGRRLFLIAQVFAPTHVPRTLCVFGCNHAACSTSPEGWRVIRSQQQDHERLPENPTAKKPSESPVELPLSAPSNHAAAANSVIAPTVLDKPVDSAAGAWGADETSWDDGCA-GDNWGATSGDGDWGVGAPGEWNSDGGVLGGIGDGDAATAAIDALLTEQEARSRQHAVGNRR------------------LPDSGLEEGKSGACGGESAXXXXXXXXXXXXXXXXXXXXXXXXXXYFPPKALNFSPEPWGLEASSSADRGMEKRIQQYREQEEDRALVAALDEALGS------SSGPGSKSGAPSASSTIGEKYERTPARAKAVLQFAERVARAPTQIVRYAYGGMPLWSASEPPKSDVPRCKCGAARVFEMQLMPALLLGLRVNDFAEARQNNRGNGRDTVVRADRAMVESNRVS-----------NNSNKS----AEHVGPHGREGNTLEKQQERLKPGSRDLVDGGGGSGDE-EG----VPPSPSAEERRKLETWGMDWGVVTVWSCPSSCDLSCEEAVVVQPPV 2977
AWFG+APV GDLVC LCGR L+L+ Q++APTHV R+LC+FGCN AACS PEGWRV+R+Q P +P++ + PT P A WGA + SWD + G+ WG GV G +GGI ATA IDALL +QE + G+R L + G SG S FP K ++F PEPWG E+S + D+ ME R+++YREQEEDR LVAALD ALG SS G K G A +++GEKYERTPARAKAV++FA+RVAR+P Q+VRYAYGG PLWSAS+PP+ ++P C CGA RVFEMQLMPALLL L+VND AE + G + +ES ++S NN+ KS A V P G + + ++ G G SG+E EG + P+PS EER +L T GMDWGVV +WSCP SC +SCEE VVVQ PV
Sbjct: 38 AWFGEAPVKVGDLVCGLCGRWLYLVTQIYAPTHVERSLCLFGCNRAACSLRPEGWRVVRTQA---------PQPVEPAQDDSD------------------PTAASAPAAHATDPWGASDVSWDAPASDGEGWGXXXXXXXXGVDTEG--------VGGI-----ATADIDALLDKQEKKQSSTCQGDRASAAAXXXXXSTGGDTCSSLAELGPNHSSSG-----SGSQKKSAAESSKSDTVAAEGGDWGGRPCFPAKTVSFVPEPWGAESSRTDDKDMENRLRRYREQEEDRGLVAALDHALGLKDAGGLSSEHGGKEG--KAVASVGEKYERTPARAKAVMRFADRVARSPQQVVRYAYGGEPLWSASDPPREEIPPCACGATRVFEMQLMPALLLQLQVNDLAERETGSLEGGSPATF----SGLESKKISTLSQVADGHDNNNTLKSITPSAVAVQPKGAASTRSTDEHGVAQGDGSGVLAGIGVSGEEDEGNETTMMPTPSVEERERLRTLGMDWGVVAIWSCPRSCSISCEECVVVQLPV 532
BLAST of mRNA_H-paniculata_contig5944.13579.1 vs. uniprot
Match: A0A2D4BDN7_PYTIN (PDCD2_C domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDN7_PYTIN) HSP 1 Score: 89.7 bits (221), Expect = 1.410e-15 Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 2
Query: 2264 IQQYREQEED---------RALVAALDEALGSSSGPGSKSGAPSASSTIGEKYERTPARAKAVLQFAERVARAPTQIVRYAYGGMPLWSASEPPKSDVPRCKCGAARVFEMQLMPALLLGLRVNDFA 2617
+QQY QEE+ R ++A ++ GS SG SA+++ GE YERTPA+ K ++F +R+ R P Q++RY YGG PLW P +PRC CG R FE+QL P + L+V++FA
Sbjct: 126 LQQYMRQEEEDKSTDVNDLRRIIANAKKSDGSVSG--------SAAASSGESYERTPAQQKHFMRFQKRINRCPLQVLRYDYGGEPLWPTPMPRGLKIPRCACGEERAFELQLTPTINYFLKVDEFA 244
BLAST of mRNA_H-paniculata_contig5944.13579.1 vs. uniprot
Match: A0A8K1CFZ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFZ9_PYTOL) HSP 1 Score: 92.0 bits (227), Expect = 1.520e-15 Identity = 64/196 (32.65%), Postives = 79/196 (40.31%), Query Frame = 2
Query: 2384 GEKYERTPARAKAVLQFAERVARAPTQIVRYAYGGMPLWSASEPPKSDVPRCKCGAARVFEMQLMPALLLGLRVNDFAEARQNNRGNGRDTVVRADRAMVESNRVSNNSNKSAEHVGPHGREGNTLEKQQERLKPGSRDLVDGGGGSGDEEGVPPSPSAEERRKLETWGMDWGVVTVWSCPSSCDLSCEEAVVVQP 2971
GE YERTPA+ K ++F +R++R P Q++RY YGG PLW A VPRC CG R FE QL P + L+V++FA + K H P +K P S GG GMDW V V+SCP SC S EE VQP
Sbjct: 311 GESYERTPAQQKHFMRFQKRISRCPLQVLRYDYGGEPLWPAPPARNLKVPRCPCGEERAFEFQLTPTINYFLKVDEFA------------------------------AKKLEAHAVP--------KKSDSDAPPASAPTQSGG------------------------GMDWASVVVYSCPKSCQQSREEFAYVQP 444
BLAST of mRNA_H-paniculata_contig5944.13579.1 vs. uniprot
Match: A0A1V9ZKR8_9STRA (PDCD2_C domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKR8_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.770e-15 Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 2
Query: 2384 GEKYERTPARAKAVLQFAERVARAPTQIVRYAYGGMPLWSASEPPKSDVPRCKCGAARVFEMQLMPALLLGLRVNDFA 2617
GE YERTP R K +L+F +R+ RAPTQ +RY YGG PLW S PPK DVP C CG ARVFE+QL+P L+V +A
Sbjct: 249 GESYERTPLREKLLLRFQKRMKRAPTQCLRYHYGGDPLWP-SPPPKIDVPPCVCGQARVFELQLVPTTNYFLKVEKYA 325
BLAST of mRNA_H-paniculata_contig5944.13579.1 vs. uniprot
Match: A0A067CN94_SAPPC (PDCD2_C domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CN94_SAPPC) HSP 1 Score: 90.5 bits (223), Expect = 2.000e-15 Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 2
Query: 2387 EKYERTPARAKAVLQFAERVARAPTQIVRYAYGGMPLWSASEPPKSDVPRCKCGAARVFEMQLMPALLLGLRVNDFA 2617
E YERTP R K L+F +R+ RAPTQ +RY YGG PLWS S PPK DVP C CGA+RVFE+QL+P L V +A
Sbjct: 234 EAYERTPLREKLFLRFQKRMKRAPTQCLRYHYGGNPLWS-SPPPKIDVPPCPCGASRVFELQLVPTTNYFLNVEKYA 309
BLAST of mRNA_H-paniculata_contig5944.13579.1 vs. uniprot
Match: A0A1W0A1M6_9STRA (PDCD2_C domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1M6_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.770e-14 Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 2
Query: 2387 EKYERTPARAKAVLQFAERVARAPTQIVRYAYGGMPLWSASEPPKSDVPRCKCGAARVFEMQLMPALLLGLRVNDFA 2617
E YERTP R K L+F +R+ RAPTQ +RY YGG PLW PPK ++P+CKCG RVFE+QL+P L+V +A
Sbjct: 243 ESYERTPLREKLFLKFKKRIKRAPTQCLRYNYGGEPLWPYP-PPKLEIPKCKCGQERVFELQLVPTTNYFLQVEKYA 318
BLAST of mRNA_H-paniculata_contig5944.13579.1 vs. uniprot
Match: A0A7S4IB63_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IB63_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.460e-13 Identity = 78/214 (36.45%), Postives = 93/214 (43.46%), Query Frame = 2
Query: 2387 EKYERTPARAKAVLQFAERVARAPTQIVRYAYGGMPLWSA---SEPPKSD----------------VPRCK-CGAARVFEMQLMPALLLGLRVNDFAEARQNNRGNGRDTVVRADRAMVESNRVSNNSNKSAEHVGPHGREGNTLEKQQERLKPGSRDLVDGGGGSGDEEGVPPSPSAEERRKLETWGMDWGVVTVWSCPSSCDLSCEEAVVVQ 2968
EKYER P +A L F ER+ RAP Q+VRYAYGG+PLWS S P K + VP C CG+ R FEMQL PALLL L V+ A T+ + VS + E G GSR VDGGG EG GM+WG + V+ CP SCD S EA+V+Q
Sbjct: 160 EKYERLPPDQRAFLTFTERMRRAPRQVVRYAYGGVPLWSVPTPSPPSKKEKRNRGRKSARRTQFPSVPPCTGCGSERTFEMQLAPALLLALDVDGHALL---------PTLASS---------VSAGEGEGREEEG------------------GSRG-VDGGG-----EG----------------GMNWGSIAVYCCPLSCDGSRGEALVMQ 315
BLAST of mRNA_H-paniculata_contig5944.13579.1 vs. uniprot
Match: B8C467_THAPS (PDCD2_C domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C467_THAPS) HSP 1 Score: 83.2 bits (204), Expect = 1.450e-12 Identity = 75/278 (26.98%), Postives = 109/278 (39.21%), Query Frame = 2
Query: 2225 EASSSADRGMEKRIQQYREQEEDRALVAALDEA-LGSSSGPGSKSGAPSASSTIGEKYERTPARAKAVLQFAERVARAPTQIVRYAYGGMPLWSASEPPKS-----------------------------DVPRCKCGAARVFEMQLMPALLLGLRVNDFAEARQNNRGNGRDTVVRADRAMVESNRVSNNSNKSAEHVGPHGREGNTLEKQQERLKPGSRDLVDGGGGSGDEEGVPPSPSAEERRKLETWGMDWGVVTVWSCPSSCDLSCEEAVVVQ 2968
E +++ + + + + +Y E+D +++AL + S G G G GE+YER P +A + F++R+ RAP Q+ RYAYGG+PLWS P K VP C CGA R+FE QL+P++L L V D A A N+GN D V+ ++T GM+WG + V+SCP SCD S EE ++VQ
Sbjct: 281 EGANNTESKVNQLLSRYLSTEDDEEILSALKGGDISYSGGGGGDKG--------GERYERLPPEERAFVSFSKRLKRAPEQVARYAYGGVPLWSIPLPNKQRHQQQSKQQSKKNPNNKTHKQAVDFYPFPTVPDCVCGAKRMFEFQLLPSMLHVLDV-DSANA---NKGNDNDDVMYL---------------------------------------------------------------------IKTGGMNWGSIAVYSCPESCDDSREEFLIVQ 477
BLAST of mRNA_H-paniculata_contig5944.13579.1 vs. uniprot
Match: A0A2P4YBS7_9STRA (PDCD2_C domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YBS7_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.290e-11 Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 2
Query: 1388 LCGTNTTAQSVTQHVVCDLPSYRELQSTVAWFGQAPVSTGDLVCRLCGRRLFLIAQVFAPTHVPRTLCVFGCNHAACSTSPEGWRVIRSQ----QQDHERL 1678
L GT QSV + P + T AW+ P DL+C C + LFL+AQV+AP + RTL VFGCN AC+ +P WRV+R Q ++DH+ +
Sbjct: 8 LLGTIQERQSVDNNS----PYVCKAGGTPAWYSSPPSVANDLICTKCSKGLFLVAQVYAPVEMDRTLYVFGCNSVACTENPGSWRVLRDQVEPVKEDHKSV 104
BLAST of mRNA_H-paniculata_contig5944.13579.1 vs. uniprot
Match: A0A1Z5J7D1_FISSO (Pre-rRNA-processing protein TSR4 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7D1_FISSO) HSP 1 Score: 77.4 bits (189), Expect = 2.200e-11 Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 2
Query: 2234 SSADRGMEKRIQQYREQEEDRALVAALDEALGSSSGPGSKSGAPSASSTIGEKYERTPARAKAVLQFAERVARAPTQIVRYAYGGMPLWSAS-EPPKSD-----------------------VPRCKCGAARVFEMQLMPALLLGLRVN 2608
+ +D ++K +++Y +EED ++ AL ++G SSG G + EK ER A +A+L F++R+ R P Q++RYAY G+PLWS E P + +P C+CGA RVFE+Q++P+LL L V+
Sbjct: 83 TGSDDKIQKMLERYMMEEEDEEILTALRGSVGPSSGGGGR-----------EKDERLSAADRALLTFSDRLKRWPRQVLRYAYNGVPLWSIPIESPIEETKHIPQRARAKKQAAAARNWEPVIPACRCGAPRVFELQILPSLLHVLEVD 220
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 349.0 |
| Seed ortholog evalue | 4e-93 |
| Seed eggNOG ortholog | 2880.D8LNZ1 |
| KEGG ko | ko:K14801 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 |
| EggNOG free text desc. | positive regulation of hematopoietic stem cell proliferation |
| EggNOG OGs | KOG2061@1,KOG2061@2759 |
| Ec32 ortholog description | Programmed cell death protein 2, C-terminal |
| Ec32 ortholog | Ec-01_000490.1 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03009 |
| Exons | 6 |
| Model size | 4147 |
| Cds size | 1611 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5944.13579.1 >prot_H-paniculata_contig5944.13579.1 ID=prot_H-paniculata_contig5944.13579.1|Name=mRNA_H-paniculata_contig5944.13579.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=537bp
MPSCAALCGTNTTAQSVTQHVVCDLPSYRELQSTVAWFGQAPVSTGDLVC
RLCGRRLFLIAQVFAPTHVPRTLCVFGCNHAACSTSPEGWRVIRSQQQDH
ERLPENPTAKKPSESPVELPLSAPSNHAAAANSVIAPTVLDKPVDSAAGA
WGADETSWDDGCAGDNWGATSGDGDWGVGAPGEWNSDGGVLGGIGDGDAA
TAAIDALLTEQEARSRQHAVGNRRLPDSGLEEGKSGACGGESAAAQKRAD
NDPIIVPGGGEEDGEEACCYFPPKALNFSPEPWGLEASSSADRGMEKRIQ
QYREQEEDRALVAALDEALGSSSGPGSKSGAPSASSTIGEKYERTPARAK
AVLQFAERVARAPTQIVRYAYGGMPLWSASEPPKSDVPRCKCGAARVFEM
QLMPALLLGLRVNDFAEARQNNRGNGRDTVVRADRAMVESNRVSNNSNKS
AEHVGPHGREGNTLEKQQERLKPGSRDLVDGGGGSGDEEGVPPSPSAEER
RKLETWGMDWGVVTVWSCPSSCDLSCEEAVVVQPPV* back to topmRNA from alignment at H-paniculata_contig5944:156..9136- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5944.13579.1 ID=mRNA_H-paniculata_contig5944.13579.1|Name=mRNA_H-paniculata_contig5944.13579.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8981bp|location=Sequence derived from alignment at H-paniculata_contig5944:156..9136- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAATCGATCATCTGTAATCAGTAGCCTGGAGCAGAATGTATTCGGGT
GAAGAACATGAGGTGTACGTGGAGCTAGGATGCCTAGGGAAGGTAATCTC
TGGAGCCAAGACTTCCCTGCCAGAAAAGAGCAAAGCCGGCGGTAAACCGG
TAGGTTCAACATGTGCTTCTGTGCCACTTATCATTCCACGGGACTGTCAC
AATTTGTCTTCGATCTGCTCTGCTGTCTGTGTGGACAATCGCTTGAATGG
CACCTGTCTCTGTAGCTGTGGCTGTCGAGTTGTCAAGATTGCTCCGATAT
TTCAGGGCTGTGACATTTAGTCTACTGTATCTCCAACTGCTGTGCTGTCG
TTTGCACAATCACTTGAATGGTACTTGTCTCTGTAGCTGTTGACTGTCGA
GTTGTCGAGATTGCTCTCAGTATTGCAAGGCTGTGACATGATATCTCGAC
AACGATAGGACGAAGTAGCTTGCCAAGTCGTGGCTGAGTCGAGTACACCA
CGCCTGCTACCGTAAAAGTTTCTTCCAGCCGCTGCTGCACTTAATTCGCA
CCACTGTACTGTGCTGTATCCAAATTAGGCACGACAAGCAATAACTTCGA
CAACATATCATACGTACTGATTATAGGCAGCGGTGCTGTCCATGACCTCC
TGCGCTTCCAGCCCTGTTTGCAGGGGTATACTTCACTATTTTGCACACAC
CGCACAGTAGACAGTGAAAACCTTGAGGTTTCCCCCCCCGCGTGATATGT
GACAACGTTTGAATGTGTGAGCGTACATTACAGGAGCTCCACGCAGGACA
GGTACAATACTGGTGATTATGATATTACCGTTGGGAGCGCTGGGTGTCGT
GTCGGATCAACAAATGCACCTAAAAGTCCATTTGCAAAAGAGTGGAGTGC
GGGCATCTTTCACAGGGAGGTCTTGCCTTAGCCCCGCGGTGCTGGAGTAT
GACCAAGTATTGTCCAGATGACCAAGCAATTTCCAGCCCCTGGCCAATCA
CAAACGTTTACTCACCTATGCATGAACTAGTTTGTTTTGTTTAACCTAAT
CCTCAACTATTGTTTTGTTTGCCGACCAAGAGTCATAAGAAAAGGCATAC
AACTAGGGCAAATATACCAGGGCCGATAGAGTTTTACTCGCGGCTACGCG
TGAACAAGCTACAGTGTTATGAAAGCTATGATTGAAGGCGTTGGAACGAG
GGAATATATGCAAACAGCAGAGCCCCAGCGAATCCCCACCGGCGCTGGAG
GGAGGTCGACGGCTCCACTGAACGATCGAATCAAGAACGCTTTCAGAAAA
AGAACATCATTGGGCTGGCTGGATGATCATGGCGCCGTGAGGACGTGATT
CAAATTGGATTCGTGATCCATGCCTTCGTGTGCGGCTTTGTGTGGCACAA
ATACCACTGCGCAGTCAGTCACTCAGCATGTGGTATGTGACTTGCCTTCC
TATCGAGAACTGCAGTCAACCGTGGTACGTAGAGCTATGTTAACTCCAGT
CGTTGCCCCTTGTACTGCCTGCGACTGTCTGAACAACGGCATCTCCATGT
CCCTGTAATATTGTGGTATTTAGTCGTTGTCTCAAAAAAAGGGACGATCT
GTTTTTGCTCATGTTTCCAAACGGGGATTAGGTAGAGATCAGCGCCCGTA
AACACTACGTGGCCCCCACACAAATGAGTTTTATAACATGTAGAACTGAA
TAGACAACGACTCGTTTAATGTCGGTTCCCATCCAATCCCTATCTAACTC
CTACCTCAAAAACAGGGGGAAATGGCGCCTAGGACATGATCTTGAGGGTG
ATTTCGAGGATAGGCAGCCACCGCTATACAGACGCAGTCCAATGCAAACA
GTAAATGTAGGATGGACAGATGATGGACATGGTTCTGCCCATAACGACTG
CAGTGCTTGACATTGTTGCCATGTGCCTTAAATTATTCCGGAATGGCCTT
TTAAAAAGGCACTAAAAGGCTCAATTCTGATTATACCAGGCGCCACGGAG
TCCTGTTGATGTCCATTTTTCCGTCGTTCTTTGCAGCTAGTTACTATCTC
CAGGTAAGCTTTGGTTGAAAGGCAACTTCATCTTGGCCTTCAGGCTATAT
CCTCTAAGTTACATGTGTCTCTTGTGTCCACTGCCAGGCGTGGTTTGGCC
AAGCTCCTGTGTCCACTGGGGACCTGGTCTGCAGGCTCTGCGGGCGAAGG
TTGTTCCTGATCGCCCAAGTGAGTTTTTCTCCTGTGGTACAAGCATGTTG
AATGGATCGTGTACAATACGGAACCGCCGTGTACAGAGTACAACACTCCG
GGGTGAGAAAGTATTTCAAAGTCGATTTTCTCAAAAGCTACCGTGCTCGT
GGTGCGGACAGCATGGTCCGTAGGCACACCTCGTCTAAGGCGGACCTCTC
ATAAGACCAATAAACTCGTTCAACAGTGTAGCGTTTGTCTGGAAAAAACG
AGTATGCATCACACGTGACGTTTCACCCTGTTACTGCCATGTGCTACCCC
TATCGTACTTCAAGCTATCGCACTTGTAGCTTCTGCAAAACGTGCAATAA
ACGAGAAAACCTCTAGTCTTTACAAAAATATCGGTAGCAGGCGATGGAAG
CATGCCGGAGCTCTCCTGTACGGGCAACAGTGGTCAGTCTATAGTCCCGG
TTCACTCGCCATTAGAGGGACAAACGGCCTCTTGGGCCCCTCCGATATGT
CGTGGACGACAGCGGCTGGTGCTGGTGGACCCACACTCCTGCTGTGGGCA
GGGAAATTGTGCACATGGAGGATGAGTAAGCATGTAGCGCTCCGCGGCAT
GAAATGCTTGGTGCCGAGAAGTGTCTGTCTTTTAGACATGGGTGGCCCAG
CACGATGCAATGAAGTGATGTCTCAGCAGTACTCTGCTGTACAAAACAGA
AGCCCACCGCGCGCAGCGTTGTAGACCAACAGTGCGGCGACAGCACGCAG
GACGGCACTCGGCGAAGACCCAATGACCGATACCGTACTGTACTGTATGT
ACTTGAGTTTAGTATTCCAATTGTAGCCCGCCGAAAGCACAAAAACAGTG
TGTCAACGGCAGCGAATTTTGATTTCGAAATGAATAAAGTTGGCGTTATA
TTCTAAAGTTCTCACAGGAATCGGTTGTACGTTTTGGTTCTAAACGCTCG
CCGCGAAAAAACTGCAAAATTCCGAAAAAAAGGTTTTGTAATGCTTGTTT
GCAGTGCGCGCTGCACAAAGCTGTAAAAGGCAAGACGGGCATCATGGGAG
AGCTTATGTGCTCAGCATCACTAACATACTTGCATATCTGTTTCTGATGA
CGATCATGTATGTCGGTGTGTAGGAGAAAATGTGTTGTGTTGTGTAAAAG
AACGTGCTTCTCGAAGAAAAAAATCTCAAAACAAAAAAATGACTGAATTT
ATAGTAATTTATTATGGTCCTCCGTAATAGTGTTGTGCAGTAAGTAACCT
TCGGTTGCCCACCACTGGAAACAAAACCTAATTCACTATTTTCTTGTCAA
AACATTCTGGCAACCATCACTCAGGTCTTCGCTCCGACCCACGTCCCGAG
AACCCTCTGCGTGTTCGGCTGCAATCACGCCGCGTGCTCGACGAGTCCCG
AAGGCTGGCGAGTCATCAGAAGCCAGCAACAGGATCATGAACGTCTACCC
GAAAACCCCACCGCGAAGAAGCCGTCCGAGTCGCCCGTTGAACTCCCACT
GTCCGCACCGAGCAATCACGCCGCCGCGGCAAACAGCGTGATCGCACCTA
CGGTGCTGGACAAGCCGGTCGATTCGGCGGCAGGTGCGTGGGGGGCCGAT
GAGACGTCGTGGGACGACGGGTGCGCTGGAGACAATTGGGGTGCGACTAG
TGGGGATGGTGATTGGGGAGTCGGTGCTCCCGGGGAATGGAACTCAGACG
GTGGCGTGCTTGGGGGTATAGGGGATGGGGACGCGGCGACTGCGGCGATC
GATGCTTTGCTGACTGAGCAGGAGGCGCGATCGAGACAACACGCGGTTGG
CAACAGACGCTTGCCGGACAGCGGGCTGGAAGAAGGCAAATCGGGAGCTT
GTGGGGGCGAGAGTGCTGCTGCCCAGAAGAGGGCCGATAATGACCCGATA
ATTGTACCTGGAGGTGGAGAAGAGGATGGGGAGGAGGCGTGTTGCTATTT
TCCGCCGAAGGCCCTGAATTTTTCGCCGGAGCCGTGGGGACTGGAGGCCT
CGAGCAGTGCTGACAGAGGCATGGAGAAGCGAATTCAGCAATACCGCGAG
CAAGAAGAAGATCGTGCTCTGGTGGCAGCGCTTGATGAAGCACTGGGCAG
CAGCAGCGGACCAGGGAGTAAATCAGGTTCGAAGTCCAGTGCTCTGTTGA
TGGCATGTTTGGCAGGACCGAGAGGGGAGGGGGGGAAGGGTCATAGAAAG
GGCGGCGCACAGGATACTGTCTCCCGCTTTGGAGACGATTGAGCACGTTG
ACTGCTCCCGACTTGGTCATTTGCCGTGCTGTGTGCAAAATCGTGAGGAT
AGGTCGCCGTGGTTGTATCCTGCAGGTTCTCCTTGAGAATGTGACGGCGA
CTTTGTGGAGGTCGTTTGGCAACGTTTCCCCCAGTTTCCGAAGCCTGCAT
GTGTTGAAAATATCCTATGGAAGTGTATAATCTTCACAAGTCTGTGTCGA
GGATAAACCCTCTGCTGTCACATGCGTCGGTGACATTTCGTCGCTCTCTG
TTCCCGTTCGCATTGGGCAGGTGCTCCGTCGGCATCATCAACCATAGGGG
AAAAGTACGAGCGAACCCCAGCCAGGTACTCTTGATCCCGCCATTTTCTC
GGCCATAAGATTCATTTTTTGGTTTTTGACACGTTAGTAGCAATGATTCC
GCTGCTGCAGGTGATATTGTACTGTAGATATTAGGCATCAGTCTAGGGGA
CAAGGACGCCAAACAGATGATTTGTCAGAAAATATATTTTTTTGTTGACA
TGCGTTGTCGTTAGATCATGTTGGTTCTGTTGCGCTGGTTTGACAATAGA
TATGTGCGATCGGCCTGACCTCAACTGTGCAAGTACCCATAAAGGTAAGG
CCCGTGTAAGCCCTCCCCCGAATACTCGTGTCTCTATTTCTGTGCGAATT
TCGACGCTGACAAGAACCTTTCTCCCGTTTGAAGAGCGTGCATTGGTCTA
CACTAGCTGTCGAAATCTATGCTAGCGGTATACCATCTAGGTAAAGGAGG
CGTTAATGCGCGTAGCCACCGCATTTGCAATTTTGCTCTGTACATGCTTG
TTTTTTTTGCCAACTCGCATGCTATACCAAAAGAACAGGCCAGCCGCAGC
GGTTATTTCATGTTGCTTTTGTATACTCGCACATATACCAGTAATATTTT
TTTTATCATGTTTGAAGTTATATAATATGGTTCATGAAGCCAAGTGAAAA
CCAACCGGATGATCCTGATGCATGCGGCCGAATTTCCGAGGTTCGCGCAG
GCTTCCGTGGTAATTTACGACATCTGTAGGGAGACAGTGTAGCGCTGCCG
GCGTTAATGATTATGACACACTCTCCACCGCATACAAATACATGTAGTAG
ATGCGGTGTCTTCACTGTACCTCGTATTTCATCCATTGAGTCCTTGCCTG
TGGCATTTAACCTTAAGTGGATCATTTTTCTCTTTTAACTGGTTTTGAGA
GGCTTAGCGTGCTTCCCCGGCGCATTGCGCTACTAGCCCTCGTGCCTTGG
TATTCGAGGTTGATTTTTGGGGGGTTTGTTTCTTCCAGCTCTTGAATGTT
TCAACCGTCTGGCAGAGCAAGATCTAGAACGGCTGCCGATTTAGCAGAAC
GCGTGCAGAAAATGTGATAAAAACATGTGTCTGCTGAAAGCAGACCATCC
TTACGAAAGATCATTGTTGTTGATCTGTATGGTGTCAAGTTTTTTTGGGA
ACATTTAACGTTGTCAAAACACCCAATCTTGTGTAAGATACTCAGCTATA
ATATCGGACTTGAATAGAAAATCAAAAAAACACTTGGGAAAGGGTTTGTT
TTGTCGGATGTGTGGACTTTTTCGTCGCTTCCTGTGCTTCAATGACGCGA
AATACCTATGATTAGTGTCGGAATTTGACGAACCGTCTGATGTTGAACTT
TTTCGCGAGATGATGGGCTGCAAGATCTACTAATACTTCCAACCCTGCGT
TGTCCCCCGTTCATCCAACGTCTTGGCACGAGATGCTACCACCTGGTGTA
TTAAGAGTTGATTTCCATCGAGTTACAACAAGACCGCAGCAGCTGGAGGC
GGCCGATTTACGTGTCTCTCAAGGTTAGCTTAAGACTTCGAACCTCGAAT
TCGATCGTATGGTTGAGTTTCGCCGATTTGTGTGCATTCCTTGCCTATAT
TTTGACAGGGCGAAGGCTGTGCTGCAGTTTGCAGAGAGAGTCGCACGCGC
CCCGACTCAAATAGTGCGATACGCCTACGGCGGGATGCCACTTTGGTCGG
CGTCTGAGCCTCCCAAGAGCGACGTGCCACGCTGCAAATGTGGTCAGTCA
GTTCACCGTGTGCATCATCTGCTACTATCACAGGCGCAAGTGTTCACAGT
GTCCTTGTTACTGTATTCGTATGTGTATACGTTGATAACACGTATTAGCA
AGTGGTAGACCTGGTAAAGTACAAGCTTTTGGGAGAGTCCAATTTAGTTC
CCTGGGAACAGCTGAGCTGGAATCGTAACTCAGGCCGTTTTCTCTGCATC
AAGAAGAGCGCCACAAAGTGCATTATCTTGTTTTTTTTCCCGGTGTCTTT
GCCTTCCGAATGATGTGCGGATTGTAAGCGGTGCAGTCAGTCCTTAACGA
GGATATATCCCAAATGAAGAATATATTCGCTTCGATTGCAGCATGCGAAA
TCTCTGGTTCTGAATTCCTGTGGACACGAAGCAGGAAACGAAAGAACAAG
AGAAGAGCGCGACGTATCATGCGGCGTTAAGTACACATTTAGTTTACTGT
GCATAGTACTAGCCAGTAATCTGATGCGGCAAAAACCACGCCGTCACCAA
CGGAGCTTGTCTTGGCCCGAAAACGTTTGTTCAGTCTGTAATACATTTTT
ACGTAGAACGCGACAATCATTTATACCTCGCACTATTCTCTTGGATGCCC
TACCTCTTATGAATGGTTAAATGTGCTAGAATATATACCGCAACTGGACG
TGCCTCTCTTGGCAAATCAAATGTTAGAGGCACCGATCCTATTCGCCGTT
TGTTCCCGATACTCTTGGGCCACATTATTTGGCCCATGTGCAGAGTACTG
CAGAGCTTTTGTACGTTACAAGGTTACTGCAAAATGTGATATTACCGTGT
CTCCTTCATGCCACTCTCGACGTGCACGTCTCATAATTTTCCGTTGCTTT
TTGTGGTTTCATTATGACGTACGTAACCAGGCGCCGCCCGCGTGTTCGAG
ATGCAGCTCATGCCCGCGTTACTGCTTGGGTTGCGAGTCAATGATTTTGC
CGAAGCGCGACAAAATAACCGTGGCAACGGCCGCGACACCGTAGTACGAG
CAGACCGAGCGATGGTCGAGTCAAACCGCGTCAGCAATAACAGCAACAAG
TCTGCTGAACACGTGGGACCTCACGGCCGAGAGGGCAACACTCTAGAGAA
GCAGCAGGAGCGTTTAAAGCCGGGTAGTCGTGATCTAGTTGATGGGGGCG
GGGGCAGTGGGGATGAGGAGGGAGTGCCTCCTTCACCTAGCGCGGAAGAA
CGAAGAAAGTTGGAAACGTGGGGCATGGATTGGGGGGTAGTGACGGTGTG
GAGTTGCCCTTCGAGCTGCGACTTGAGCTGTGAGGAAGCTGTTGTAGTGC
AGCCTCCTGTATAAAATATATGTAGCGGCCAGGCCACCTCAGCTCCTGAA
GAAACTCGAAATCGTTTAGATACTATATATACTACTATCTCTGTCCCGTA
AGTCTGGCTTATAATTGTATTTTGTAAATATCTTTAGAAATTTCGTGGAA
AATAAAGCATACCATTCGAAAGCCTACACGTTCAATTTGCATAAGAATGT
CTTTAAAATGTTTGTTGAATTCGAAATGGTTGAGAATCGGGTATCCCGGA
ATGGAATATTTTGCAAGAACAGACGAATAGGCCGAAATCGTCTGAAAATC
GTTGTTGGTGGTTGATAAAATCCCAAGGGGATCCCTGATAAAAAATTTAT
TTGTTGCATTGTATCCCTTCCTGGCAATTCATATTATGTAGTACAATAAA
CTTATTGTTCATTGTTGCCATCCTCCCCATCTATTCACCAATTGAGGGCC
GCCTCTTTGATGACACTAACACGCCATATCCTGATCGTGTCGTCAAAGCC
GTTATCAGGATCCGGGGAGGAAACGGCGCAGATAAACGTCGCTTTGGGAA
TACGACTCTTACACAGTGCACCTTGATGGAGCTCATTCACTTCCCCCCGG
AGAAAATGCCGACTCGCTCCCGTTCGCGGATTAGGTAGAGAACCATGCTT
CATCGATGTGAATCGTGTTGCGGCCACTCAGGGATATCTAGCGGTTCTTT
GAAGGGTGATCAAAAGATTAAGTCCACCACCGGGTTCTCTGTGCGTGAGC
GATAAACTCGGGGTGACGCGCCGTTTTATCTTCGTCGCTCGCATGGCTTT
GAGCCAGTGCTGAAGTTTGGAGCTGCCGGTCACGAGACTGATCTCGGTTA
GCTTAGCGGAGAGCTGGTCAAGGGTCAGGGTGCGTTGTTCAGCATTGACC
CGTCGAATTTCCGTCTGTATACTTGGCGTAACGTTAGACGGCCGGCCTGA
TCTAGCTACTAATTTCAGGGAAAAAGAGTTTCTGCTCTCCAGTTGCTGTC
GCACGCGCGCCCACAACCCCCCGGGTAGGTGATGTGAACGCGGAATTCGT
CTGTCAGCTGTTAAGGAACGCGGTGGTTTCCGGGGTGAAGTGCCAAAGCA
TAGTCATCCTACGGTAGGAGGGGTGGGGGGGTGTTCAGGCGCTTTGTTCA
ACAGAGGAGCCGCTTTGAGAAGAGCATCGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig5944:156..9136- >mRNA_H-paniculata_contig5944.13579.1 ID=mRNA_H-paniculata_contig5944.13579.1|Name=mRNA_H-paniculata_contig5944.13579.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3222bp|location=Sequence derived from alignment at H-paniculata_contig5944:156..9136- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTCGTGTGCGGCTTTGTGTGGCACAAATACCACTGCGCAGTCAGT
CACTCAGCATGTGGTATGTGACTTGCCTTCCTATCGAGAACTGCAGTCAA
CCGTGATGCCTTCGTGTGCGGCTTTGTGTGGCACAAATACCACTGCGCAG
TCAGTCACTCAGCATGTGGTATGTGACTTGCCTTCCTATCGAGAACTGCA
GTCAACCGTGGCGTGGTTTGGCCAAGCTCCTGTGTCCACTGGGGACCTGG
TCTGCAGGCTCTGCGGGCGAAGGTTGTTCCTGATCGCCCAAGCGTGGTTT
GGCCAAGCTCCTGTGTCCACTGGGGACCTGGTCTGCAGGCTCTGCGGGCG
AAGGTTGTTCCTGATCGCCCAAGTCTTCGCTCCGACCCACGTCCCGAGAA
CCCTCTGCGTGTTCGGCTGCAATCACGCCGCGTGCTCGACGAGTCCCGAA
GGCTGGCGAGTCATCAGAAGCCAGCAACAGGATCATGAACGTCTACCCGA
AAACCCCACCGCGAAGAAGCCGTCCGAGTCGCCCGTTGAACTCCCACTGT
CCGCACCGAGCAATCACGCCGCCGCGGCAAACAGCGTGATCGCACCTACG
GTGCTGGACAAGCCGGTCGATTCGGCGGCAGGTGCGTGGGGGGCCGATGA
GACGTCGTGGGACGACGGGTGCGCTGGAGACAATTGGGGTGCGACTAGTG
GGGATGGTGATTGGGGAGTCGGTGCTCCCGGGGAATGGAACTCAGACGGT
GGCGTGCTTGGGGGTATAGGGGATGGGGACGCGGCGACTGCGGCGATCGA
TGCTTTGCTGACTGAGCAGGAGGCGCGATCGAGACAACACGCGGTTGGCA
ACAGACGCTTGCCGGACAGCGGGCTGGAAGAAGGCAAATCGGGAGCTTGT
GGGGGCGAGAGTGCTGCTGCCCAGAAGAGGGCCGATAATGACCCGATAAT
TGTACCTGGAGGTGGAGAAGAGGATGGGGAGGAGGCGTGTTGCTATTTTC
CGCCGAAGGCCCTGAATTTTTCGCCGGAGCCGTGGGGACTGGAGGCCTCG
AGCAGTGCTGACAGAGGCATGGAGAAGCGAATTCAGCAATACCGCGAGCA
AGAAGAAGATCGTGCTCTGGTGGCAGCGCTTGATGAAGCACTGGGCAGCA
GCAGCGGACCAGGGAGTAAATCAGGTCTTCGCTCCGACCCACGTCCCGAG
AACCCTCTGCGTGTTCGGCTGCAATCACGCCGCGTGCTCGACGAGTCCCG
AAGGCTGGCGAGTCATCAGAAGCCAGCAACAGGATCATGAACGTCTACCC
GAAAACCCCACCGCGAAGAAGCCGTCCGAGTCGCCCGTTGAACTCCCACT
GTCCGCACCGAGCAATCACGCCGCCGCGGCAAACAGCGTGATCGCACCTA
CGGTGCTGGACAAGCCGGTCGATTCGGCGGCAGGTGCGTGGGGGGCCGAT
GAGACGTCGTGGGACGACGGGTGCGCTGGAGACAATTGGGGTGCGACTAG
TGGGGATGGTGATTGGGGAGTCGGTGCTCCCGGGGAATGGAACTCAGACG
GTGGCGTGCTTGGGGGTATAGGGGATGGGGACGCGGCGACTGCGGCGATC
GATGCTTTGCTGACTGAGCAGGAGGCGCGATCGAGACAACACGCGGTTGG
CAACAGACGCTTGCCGGACAGCGGGCTGGAAGAAGGCAAATCGGGAGCTT
GTGGGGGCGAGAGTGCTGCTGCCCAGAAGAGGGCCGATAATGACCCGATA
ATTGTACCTGGAGGTGGAGAAGAGGATGGGGAGGAGGCGTGTTGCTATTT
TCCGCCGAAGGCCCTGAATTTTTCGCCGGAGCCGTGGGGACTGGAGGCCT
CGAGCAGTGCTGACAGAGGCATGGAGAAGCGAATTCAGCAATACCGCGAG
CAAGAAGAAGATCGTGCTCTGGTGGCAGCGCTTGATGAAGCACTGGGCAG
CAGCAGCGGACCAGGGAGTAAATCAGGTGCTCCGTCGGCATCATCAACCA
TAGGGGAAAAGTACGAGCGAACCCCAGCCAGGTGCTCCGTCGGCATCATC
AACCATAGGGGAAAAGTACGAGCGAACCCCAGCCAGGGCGAAGGCTGTGC
TGCAGTTTGCAGAGAGAGTCGCACGCGCCCCGACTCAAATAGTGCGATAC
GCCTACGGCGGGATGCCACTTTGGTCGGCGTCTGAGCCTCCCAAGAGCGA
CGTGCCACGCTGCAAATGTGGGCGAAGGCTGTGCTGCAGTTTGCAGAGAG
AGTCGCACGCGCCCCGACTCAAATAGTGCGATACGCCTACGGCGGGATGC
CACTTTGGTCGGCGTCTGAGCCTCCCAAGAGCGACGTGCCACGCTGCAAA
TGTGGCGCCGCCCGCGTGTTCGAGATGCAGCTCATGCCCGCGTTACTGCT
TGGGTTGCGAGTCAATGATTTTGCCGAAGCGCGACAAAATAACCGTGGCA
ACGGCCGCGACACCGTAGTACGAGCAGACCGAGCGATGGTCGAGTCAAAC
CGCGTCAGCAATAACAGCAACAAGTCTGCTGAACACGTGGGACCTCACGG
CCGAGAGGGCAACACTCTAGAGAAGCAGCAGGAGCGTTTAAAGCCGGGTA
GTCGTGATCTAGTTGATGGGGGCGGGGGCAGTGGGGATGAGGAGGGAGTG
CCTCCTTCACCTAGCGCGGAAGAACGAAGAAAGTTGGAAACGTGGGGCAT
GGATTGGGGGGTAGTGACGGTGTGGAGTTGCCCTTCGAGCTGCGACTTGA
GCTGTGAGGAAGCTGTTGTAGTGCAGCCTCCTGTATAAGCGCCGCCCGCG
TGTTCGAGATGCAGCTCATGCCCGCGTTACTGCTTGGGTTGCGAGTCAAT
GATTTTGCCGAAGCGCGACAAAATAACCGTGGCAACGGCCGCGACACCGT
AGTACGAGCAGACCGAGCGATGGTCGAGTCAAACCGCGTCAGCAATAACA
GCAACAAGTCTGCTGAACACGTGGGACCTCACGGCCGAGAGGGCAACACT
CTAGAGAAGCAGCAGGAGCGTTTAAAGCCGGGTAGTCGTGATCTAGTTGA
TGGGGGCGGGGGCAGTGGGGATGAGGAGGGAGTGCCTCCTTCACCTAGCG
CGGAAGAACGAAGAAAGTTGGAAACGTGGGGCATGGATTGGGGGGTAGTG
ACGGTGTGGAGTTGCCCTTCGAGCTGCGACTTGAGCTGTGAGGAAGCTGT
TGTAGTGCAGCCTCCTGTATAA back to top
|