mRNA_H-paniculata_contig59426.13578.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59426.13578.1
Unique NamemRNA_H-paniculata_contig59426.13578.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59426.13578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59426contigH-paniculata_contig59426:2..707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size706
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59426.13578.1prot_H-paniculata_contig59426.13578.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59426 47..412 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930653.0541005-UTR-H-paniculata_contig59426:1..461622930653.0541005-UTR-H-paniculata_contig59426:1..46Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59426 2..46 +
1691481390.685267-UTR-H-paniculata_contig59426:1..461691481390.685267-UTR-H-paniculata_contig59426:1..46Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59426 2..46 +
1622930653.1014042-UTR-H-paniculata_contig59426:412..7071622930653.1014042-UTR-H-paniculata_contig59426:412..707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59426 413..707 +
1691481390.7059624-UTR-H-paniculata_contig59426:412..7071691481390.7059624-UTR-H-paniculata_contig59426:412..707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59426 413..707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930653.0850475-CDS-H-paniculata_contig59426:46..4121622930653.0850475-CDS-H-paniculata_contig59426:46..412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59426 47..412 +
1691481390.6970956-CDS-H-paniculata_contig59426:46..4121691481390.6970956-CDS-H-paniculata_contig59426:46..412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59426 47..412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59426.13578.1

>prot_H-paniculata_contig59426.13578.1 ID=prot_H-paniculata_contig59426.13578.1|Name=mRNA_H-paniculata_contig59426.13578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MTSNFDRWTAGRFQNIFRSLLENRFSISRTLCYMSRDTIMCPTVHRAEIV
PKTGEKRPTKIPCNTHENSGMGSHQWRLLFIYPQEKPPRTCALCTLLGPI
FCCTFRRREYFDIVHTDSLTA*
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mRNA from alignment at H-paniculata_contig59426:2..707+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59426.13578.1 ID=mRNA_H-paniculata_contig59426.13578.1|Name=mRNA_H-paniculata_contig59426.13578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=706bp|location=Sequence derived from alignment at H-paniculata_contig59426:2..707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTGCAAAGTTTGGACATTTTGGAAGCTTTCACTCCAAAATTGATGAC
TTCAAATTTTGATCGGTGGACGGCAGGACGGTTTCAAAATATATTCCGCT
CTCTTCTTGAAAATAGATTCTCCATCTCACGAACACTCTGTTATATGTCG
AGGGACACCATAATGTGTCCCACAGTACATCGGGCTGAAATTGTACCTAA
AACGGGCGAGAAACGGCCGACGAAGATCCCGTGCAACACACATGAAAACA
GTGGCATGGGCTCACACCAATGGCGATTGTTGTTCATTTATCCGCAAGAG
AAACCTCCCCGTACATGTGCCCTTTGCACTCTTTTGGGTCCGATCTTCTG
CTGCACATTTCGGCGCCGTGAGTACTTCGACATCGTGCATACGGACAGCC
TGACGGCGTGAAATATAAAATTGGGATTGGGGAGAAAGGGAGCGTCGTTT
TCCTGTGGGGGTTAAGGGGTCGTAATCAGTCGTTTTGGACGACTAATTAT
TGGTCATTGGATGTGTGCAAAAATGATAAATTAAAAAAGAAGATGCACTG
AATGTCTGCAAGTATGTGTCGTTTAGCGCTAACAGTATATTGGTGAGGTT
GAGATCCAATATACTGTTCGAACAATATTGTGGCCATAATACGTGCTCGT
TTCAGCACGCCAATAATACCTTGTTGCCCTTGACTTGGCTGGTGAGCCAT
GGCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig59426:2..707+

>mRNA_H-paniculata_contig59426.13578.1 ID=mRNA_H-paniculata_contig59426.13578.1|Name=mRNA_H-paniculata_contig59426.13578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig59426:2..707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTCAAATTTTGATCGGTGGACGGCAGGACGGTTTCAAAATATATT
CCGCTCTCTTCTTGAAAATAGATTCTCCATCTCACGAACACTCTGTTATA
TGTCGAGGGACACCATAATGTGTCCCACAGTACATCGGGCTGAAATTGTA
CCTAAAACGGGCGAGAAACGGCCGACGAAGATCCCGTGCAACACACATGA
AAACAGTGGCATGGGCTCACACCAATGGCGATTGTTGTTCATTTATCCGC
AAGAGAAACCTCCCCGTACATGTGCCCTTTGCACTCTTTTGGGTCCGATC
TTCTGCTGCACATTTCGGCGCCGTGAGTACTTCGACATCGTGCATACGGA
CAGCCTGACGGCGTGAATGACTTCAAATTTTGATCGGTGGACGGCAGGAC
GGTTTCAAAATATATTCCGCTCTCTTCTTGAAAATAGATTCTCCATCTCA
CGAACACTCTGTTATATGTCGAGGGACACCATAATGTGTCCCACAGTACA
TCGGGCTGAAATTGTACCTAAAACGGGCGAGAAACGGCCGACGAAGATCC
CGTGCAACACACATGAAAACAGTGGCATGGGCTCACACCAATGGCGATTG
TTGTTCATTTATCCGCAAGAGAAACCTCCCCGTACATGTGCCCTTTGCAC
TCTTTTGGGTCCGATCTTCTGCTGCACATTTCGGCGCCGTGAGTACTTCG
ACATCGTGCATACGGACAGCCTGACGGCGTGA
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