mRNA_H-paniculata_contig594.13574.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig594.13574.1
Unique NamemRNA_H-paniculata_contig594.13574.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: D7FNR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR3_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 1.140e-93
Identity = 187/437 (42.79%), Postives = 240/437 (54.92%), Query Frame = 1
Query:  328 FVITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSA----------------CTAKHPKPAESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRAL---EGVQDEAQAKNENAVSATINHRVASNGKG---------------------AKLIVGMPVITSRSGLGFWLELCGVDKCDRICKEAFETFENPKTLTTASRAECAVSSTSTELDAISGVKTAHSNITEGPHQNGGTDTHVELKV----SRYGRAWFETTLLKLRDLDH--LGVAGIHVMCPGPGPRRRVKELMDDGVFN 1500
            FV+TLER+VV    DT  D  LW S VFDAE+HP +PPA T+ GL   Y +R    +     +    S+                C AK     E GYLVR+VP+Q S ++ +RRRLA AAGVD+EG +++  RPADALL++SGSHP RRLP  K    DV D ++LA+SMR+ G LPKGL +WAVANPL EA EAG++R+R+KVELGAEVILTQPPLAWE FERWL+ +HAS AL      ++    K      AT+     S   G                     A+++VG+PVITS  GL FWL+LCG+     +CK+ FE F  P ++   + +E                          PH +   +           S YG+ W ETT+LKL+ LD   LGVAG+H+M PG  PRRR  EL   G F 
Sbjct:   48 FVVTLERSVV---TDTE-DGALWKSGVFDAEIHPDLPPAGTMAGLARCYLRRAKAAVFEMRPDGNSDSSSEGEKAAGSDTDTVGRCVAKEGN--EGGYLVRTVPVQLSRQKELRRRLAVAAGVDAEGAKVRNVRPADALLLVSGSHPGRRLPFAKSFLPDVYDELRLATSMRNSGRLPKGLALWAVANPLAEADEAGVDRVRKKVELGAEVILTQPPLAWELFERWLQGVHASGALGRSAAARNAGLTKPGEGTDATVKIFETSGSTGEERSTRHPLAAAEGRRGGDPAARILVGLPVITSPKGLRFWLDLCGLHDKPGVCKQVFEAFGQPSSVVARTGSE-------------------------EPHAHPAGEKQATAVAGSPPSPYGQEWLETTMLKLKSLDGSGLGVAGVHLMAPGRAPRRRAIELAATGFFG 453          
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A6H5L748_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L748_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 9.930e-91
Identity = 183/435 (42.07%), Postives = 239/435 (54.94%), Query Frame = 1
Query:  328 FVITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPA--------------ESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEG---VQDEAQAKNENAVSATINHRVASNGKG---------------------AKLIVGMPVITSRSGLGFWLELCGVDKCDRICKEAFETFENPKTLTTASRAECAVSSTSTELDAISGVKTAHSNITEGPHQNGGTDTHVELKV----SRYGRAWFETTLLKLRDLDH--LGVAGIHVMCPGPGPRRRVKELMDDGVFN 1500
            FV+TLERAVV    DT  D  LW S VFDAE+HP +PPA T+ GL+  Y +R    +     +    S+   +    +              E GYLVR+VP+Q S ++   R  A A GVD+EG ++   RPADALL++SGSHP RRLP  K   +DV D ++LA+SMR+ G LPKGL +WAVANPLTE  EAG++R+R+KVELGAEVILTQPPLAWE FERWL+ +H S AL G    +++  AK      AT+    AS   G                     A+++VG+PVIT+  GL FWL LCG+     +CK+AFE F +P ++   +                          TE PH +   +           S YG+ W ETT+LKL+ LD   LGVAG+H+M PG  PRRR  +L   G F 
Sbjct:   48 FVVTLERAVV---TDTE-DGTLWKSGVFDAEIHPDLPPAGTMAGLVRYYLRRAKAAVFEMRPDRNSDSSSKGEKSTGSDTDTVGRSVARDGIEGGYLVRTVPVQLSRQKA--RDAACADGVDAEGAKVPNVRPADALLLVSGSHPGRRLPFAKSFLMDVYDELRLATSMRNSGHLPKGLALWAVANPLTEVDEAGIDRVRKKVELGAEVILTQPPLAWELFERWLQGVHTSGALGGSAAARNDGLAKPGEGTDATMKMFEASGSTGEERSTRRPTAAAEGQRGGDSTARILVGLPVITAPKGLRFWLNLCGLHDNPGVCKQAFEAFGHPSSVVARTG-------------------------TEEPHGHPAGEKQASAVAGSTPSPYGQEWLETTMLKLKSLDGSGLGVAGVHLMAPGRAPRRRAIQLAAAGFFG 451          
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A8J9WJA9_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WJA9_9CHLO)

HSP 1 Score: 144 bits (364), Expect = 1.330e-34
Identity = 101/271 (37.27%), Postives = 133/271 (49.08%), Query Frame = 1
Query:  331 VITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPAESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELC 1143
            V+TLER   G       D +LW +  FD  V+P +P        L     R  G L       R+ SA   +       G LVR+  +Q  G E +RRRL   AG++ +G      RPADALL++SGSHPLRR         D    + LA S+RD+GLLP   ++WAVANPL +  +     L +KV  GAEVILTQPPL +  FE W          +GV                   VAS    AK+++G+P++TS   + FWLELC
Sbjct:   39 VLTLER---GIGAHLGKDTKLWGTGSFDVGVYPDLPAVMKWSDFLDFKKLRKTGKLQDLE-KLRIESAAGGRE------GLLVRTCGVQLRGHEQLRRRLLLRAGLEEDGRSAAGVRPADALLLVSGSHPLRRALAWSGVLQDSVSALHLAHSLRDQGLLPPQTSLWAVANPLVDTPDT----LERKVAAGAEVILTQPPLIYSKFESW---------FDGVD---------------RLGVASK---AKIVIGIPMLTSSRSMLFWLELC 268          
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A2P6TC01_CHLSO (Ribonuclease Z n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TC01_CHLSO)

HSP 1 Score: 145 bits (366), Expect = 1.340e-32
Identity = 101/273 (37.00%), Postives = 137/273 (50.18%), Query Frame = 1
Query:  331 VITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPAESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELCGV 1149
            ++TLERAV G K     D  LW S  F A+V+P +P A T   LL + T +  G        +   +AC      PAE  + VR+V  Q   ++ +R  +  AAGV  +G        ADALL +SGSHP RRLP   R      D + LAS+MR+ G LP  L++WAV NP+       ++RL+QK ++GAEV+LTQPPL WE    W  +  A R  E +                           K+++G+PV+ S   L FWL LCGV
Sbjct:  831 LLTLERAV-GEK--HGVDGNLWDSCRFGAQVYPDLPLASTWRDLL-RRTVQTAGRAAEPGSVDPPPAAC------PAER-WTVRTVAAQLRSRDQLRSMMLSAAGVGPDGEPRPGAARADALLFVSGSHPARRLPGAGRWLQSSFDLLLLASAMREEGYLPPALSLWAVENPMLSP----VDRLQQKADVGAEVVLTQPPLLWERTAAWAEEAAARRVSEHI---------------------------KVVLGLPVVPSVGNLDFWLRLCGV 1061          
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A2P6VAW2_9CHLO (5,10-methylenetetrahydrofolate reductase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VAW2_9CHLO)

HSP 1 Score: 136 bits (342), Expect = 2.130e-31
Identity = 98/277 (35.38%), Postives = 131/277 (47.29%), Query Frame = 1
Query:  334 ITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRV-----MGVLGAWHCNERMTSACTAKHPKPAESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELCGV 1149
            +TLERAV G K     D+ LW S  F AE++P +P A T   LL +  Q        G +G          AC      PAE  + VR+V  Q   ++ +R  +  AAGVD+ G        ADALL +SGSHP R LP   +      D + LAS+MR+ G LP  L++WAV NP+       + RL +K+E GAEVI+TQPPL W     W       R  + V                           K+++G+P++ S   L FWL LCGV
Sbjct:   72 LTLERAV-GDK--HGIDQNLWDSCHFRAEIYPDLPLATTWRDLLRRTVQTAGRDSEAGWVGP------AAQAC------PAER-WTVRTVAAQLRSRDQLRAMMLSAAGVDASGDPKPGGSSADALLFVSGSHPARHLPGATKWLQSSFDLLLLASAMREEGYLPPSLSLWAVENPMLSP----VSRLDKKIENGAEVIITQPPLLWNRTALWFEQADKQRLSQNV---------------------------KVVLGLPIVPSVGNLEFWLRLCGV 301          
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A1D2A210_AUXPR (Uncharacterized protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A210_AUXPR)

HSP 1 Score: 135 bits (341), Expect = 2.310e-31
Identity = 105/295 (35.59%), Postives = 136/295 (46.10%), Query Frame = 1
Query:  328 FVITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPA-------ESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELCGVDKCDRICKEAFETF 1191
             ++TLER V     +   DEELW S  F A V P +PPA TL  L  +  +     L   H  E  T+A  A    PA            VRSV  Q   +E +RRR+A AA   SEG       PA ALL++SG HP+R LP++     +    ++ A + R RG LP    +WAVANP +E     L RL  KVE GA  +LTQPPL W     W+                    E A    + HR       A++++G+P+ITSRS L FWL L G    D    +    F
Sbjct:   59 LLLTLERKVGR---EAGSDEELWRSGAFGAGVVPDLPPATTLRQLAAQALR-----LPGGHVAESPTTAPPATCRAPAGLTPQQPPGCITVRSVAAQLRSREDLRRRMA-AAVAGSEGHP-----PAQALLLLSGGHPVRTLPIVPHFLGNSLSMLRDAGTARSRGELPADTRLWAVANPGSET----LRRLAAKVEAGASTVLTQPPLLWRRSREWM--------------------ERAAENGLTHR-------ARIVLGVPLITSRSNLEFWLFLIGAGAGDEEAAQLLADF 308          
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A383W723_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W723_TETOB)

HSP 1 Score: 126 bits (316), Expect = 1.080e-27
Identity = 98/294 (33.33%), Postives = 137/294 (46.60%), Query Frame = 1
Query:  337 TLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPAESGYL---------------------VRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKAT--RP-ADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELCG 1146
            TLE +V         D +L ++  F AEVHP +P A T  GL  + + R+ G         R   A  AK    A +  +                     V +V  Q S    I   +  AAGV   G++ +A+  RP ADALL++SGSHP+R LPLL++        ++ AS ++ RG+LP+ L +WAVANP+ E   +  E   QKV  GA+VILTQPPL W  FE W+ D    R L                             A+L+VG P+++S + + FW  LCG
Sbjct:   50 TLEASVGSAN---QLDLDLLATGAFGAEVHPDLPIATTWHGLYKQISSRLQGTA------RRDALAAAAKAQSKAAAVQMMADIASCEEAMDSQGLKPVLHVATVGAQLSSMADISDAMCTAAGVTPSGVRREASEHRPHADALLLVSGSHPVRTLPLLQQFLPGSVAMLRQASQLKQRGVLPQQLQLWAVANPVMEPDASYTE---QKVAAGAQVILTQPPLDWARFEAWMEDARR-RQLHSA--------------------------ARLLVGFPLLSSAANVTFWGALCG 304          
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A061R353_9CHLO (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R353_9CHLO)

HSP 1 Score: 116 bits (290), Expect = 1.890e-25
Identity = 70/194 (36.08%), Postives = 103/194 (53.09%), Query Frame = 1
Query:  565 SGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELCG 1146
            S +LVR+V +Q   +  +   +   A  + +G        A+ALL +SGSHP+R+L ++ R      D + +A  M+ RG LP  L +WAV NPL E ++A  +RLR+K+E GAEV++TQPPL W+ F+RW  D      LE  Q                           L+VG+P+++S   L FWL+LCG
Sbjct:   22 SRWLVRTVGVQCRSRRELGEHILRQAFGNDDG-DADQIGAANALLCVSGSHPVRQLSIMGRLLPSSLDTLAMAGEMKARGNLPGSLRLWAVENPLLE-YDA--QRLRRKIEAGAEVVVTQPPLDWDSFQRWADDADRLGLLEQCQ---------------------------LVVGLPMLSSAGNLAFWLQLCG 184          
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A835YF65_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YF65_9CHLO)

HSP 1 Score: 118 bits (296), Expect = 3.810e-25
Identity = 95/292 (32.53%), Postives = 131/292 (44.86%), Query Frame = 1
Query:  328 FVITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPAESGYLVRSVPIQTSGKEGIRRRLA------DAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATI-------------NHRVASNGKGAKLIVGMPVITSRSGLGFWLELCG 1146
            + +TLER   G   +   + EL SS  F AEV P +P A T   L       +  + G+   +     A    H         V +V      +  I  R+       DAA    EG Q    + A ALL +SGSHP+R LPL+   F    D +++A+ +R  G +P    +WAVANP TE     LER   KVELGA+V+LTQPPL WE +  WL D      L      + A + +A ++                   +    GA+L+VG P+ +S   L FWL L G
Sbjct:   46 WTLTLER---GMGKEYGKEAELQSSGAFAAEVFPDLPIATTWQNL-------IKALSGSLRASATADPAPPFTHFTTRPGAAKVVTVAANLRSEADIEARIRSACAGPDAAAQGPEGAQ--GPQRARALLCVSGSHPVRSLPLVPSLFRSSLDTLRIATRLRAAGAIPPDTQLWAVANPNTERGAGLLER---KVELGAQVVLTQPPLDWEAYLAWLGDAERRGLLLPALPSSSAPSPSAPASEAAGADXXXXXXXXXXXTPSPTDAGARLLVGHPMASSAGNLSFWLALSG 322          
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A7S0S575_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S575_9CHLO)

HSP 1 Score: 115 bits (288), Expect = 3.460e-24
Identity = 93/278 (33.45%), Postives = 124/278 (44.60%), Query Frame = 1
Query:  313 HQQSNFVITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPAESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELCG 1146
            H  + F++TLER V  T   +  D +L ++  F A+V P +P A T   L      + MG   A       TS    K    A     V +V       + I +R+  A      G      RPADALL+++GSHPLR LP  +R        ++LAS ++ RG++P    +WAVANP    +E G     +KV  GA V+LTQPPL    FE WLRD    R L                          G+ A+L+VG P  TS S   FW  L G
Sbjct:   75 HAGTGFLLTLERTVGAT---SGADTDLVTTGAFGAQVFPDLPAATTWANLW-----KSMGSSAA-------TSQDEDKGSDVAPDSLKVITVAANLRSMQEIEQRMVAATTAGPSG------RPADALLLVTGSHPLRTLPGSRRLLPTSLATLELASQLKARGVIPAATQLWAVANP---NNEQGAGLAAEKVARGASVLLTQPPLDAGAFEAWLRDADR-RGL--------------------------GRQARLVVGHPWFTSASNAAFWGALAG 301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNR3_ECTSI1.140e-9342.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L748_9PHAE9.930e-9142.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J9WJA9_9CHLO1.330e-3437.27Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A2P6TC01_CHLSO1.340e-3237.00Ribonuclease Z n=1 Tax=Chlorella sorokiniana TaxID... [more]
A0A2P6VAW2_9CHLO2.130e-3135.385,10-methylenetetrahydrofolate reductase n=1 Tax=M... [more]
A0A1D2A210_AUXPR2.310e-3135.59Uncharacterized protein n=3 Tax=Auxenochlorella pr... [more]
A0A383W723_TETOB1.080e-2733.33Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A061R353_9CHLO1.890e-2536.08Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A835YF65_9CHLO3.810e-2532.53Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7S0S575_9CHLO3.460e-2433.45Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig594contigH-paniculata_contig594:18647..21876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score145.6
Seed ortholog evalue5.9e-32
Seed eggNOG ortholog554065.XP_005846552.1
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E0ZU@1,2S8CR@2759,34N70@3041,37XFJ@33090
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons5
Model size1884
Cds size1422
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930652.6238074-UTR-H-paniculata_contig594:18646..187391622930652.6238074-UTR-H-paniculata_contig594:18646..18739Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig594 18647..18739 +
1691481390.5075064-UTR-H-paniculata_contig594:18646..187391691481390.5075064-UTR-H-paniculata_contig594:18646..18739Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig594 18647..18739 +
1622930652.7202804-UTR-H-paniculata_contig594:21507..218761622930652.7202804-UTR-H-paniculata_contig594:21507..21876Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig594 21508..21876 +
1691481390.5570052-UTR-H-paniculata_contig594:21507..218761691481390.5570052-UTR-H-paniculata_contig594:21507..21876Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig594 21508..21876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930652.6400845-CDS-H-paniculata_contig594:18739..190471622930652.6400845-CDS-H-paniculata_contig594:18739..19047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig594 18740..19047 +
1691481390.5169723-CDS-H-paniculata_contig594:18739..190471691481390.5169723-CDS-H-paniculata_contig594:18739..19047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig594 18740..19047 +
1622930652.6534255-CDS-H-paniculata_contig594:19266..194771622930652.6534255-CDS-H-paniculata_contig594:19266..19477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig594 19267..19477 +
1691481390.5251105-CDS-H-paniculata_contig594:19266..194771691481390.5251105-CDS-H-paniculata_contig594:19266..19477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig594 19267..19477 +
1622930652.6717453-CDS-H-paniculata_contig594:19967..201551622930652.6717453-CDS-H-paniculata_contig594:19967..20155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig594 19968..20155 +
1691481390.5330951-CDS-H-paniculata_contig594:19967..201551691481390.5330951-CDS-H-paniculata_contig594:19967..20155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig594 19968..20155 +
1622930652.6938784-CDS-H-paniculata_contig594:20534..206871622930652.6938784-CDS-H-paniculata_contig594:20534..20687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig594 20535..20687 +
1691481390.5409539-CDS-H-paniculata_contig594:20534..206871691481390.5409539-CDS-H-paniculata_contig594:20534..20687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig594 20535..20687 +
1622930652.707794-CDS-H-paniculata_contig594:20945..215071622930652.707794-CDS-H-paniculata_contig594:20945..21507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig594 20946..21507 +
1691481390.5489604-CDS-H-paniculata_contig594:20945..215071691481390.5489604-CDS-H-paniculata_contig594:20945..21507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig594 20946..21507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig594.13574.1prot_H-paniculata_contig594.13574.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig594 18740..21507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig594.13574.1

>prot_H-paniculata_contig594.13574.1 ID=prot_H-paniculata_contig594.13574.1|Name=mRNA_H-paniculata_contig594.13574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=474bp
MPVWKFLYVLALLNDSLSLFVTNVRMMLMVLSPQSSRRCVALSRLMTVRT
SLSKGCKVTYMNEQKMDCGRGLHHQQSNFVITLERAVVGTKVDTNCDEEL
WSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTA
KHPKPAESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADA
LLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVAN
PLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEG
VQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELC
GVDKCDRICKEAFETFENPKTLTTASRAECAVSSTSTELDAISGVKTAHS
NITEGPHQNGGTDTHVELKVSRYGRAWFETTLLKLRDLDHLGVAGIHVMC
PGPGPRRRVKELMDDGVFNVWRR*
back to top

mRNA from alignment at H-paniculata_contig594:18647..21876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig594.13574.1 ID=mRNA_H-paniculata_contig594.13574.1|Name=mRNA_H-paniculata_contig594.13574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3230bp|location=Sequence derived from alignment at H-paniculata_contig594:18647..21876+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAGGACCACCCATCAGCCCATCCTCCCTCCTGTTGCCGTGGTCAGAG AGCCAGTGCCACAGGGGAAGGAGGGATCCGCTTGAGAGTGTGTATGCCCG TATGGAAATTCTTGTATGTGCTTGCTCTGCTTAATGATTCCCTTTCTCTA TTTGTGACTAACGTCAGAATGATGTTGATGGTCTTATCTCCACAATCGAG CAGAAGGTGTGTTGCGTTGAGCAGATTGATGACGGTCCGCACGTCGTTGA GCAAAGGATGTAAGGTCACCTATATGAACGAGCAGAAGATGGATTGTGGC AGGGGACTACATCACCAACAGTCGAATTTCGTCATCACTCTTGAGCGTGC CGTCGTCGGGACGAAGGTTGACACAAATTGTGATGAGGAACTTTGGAGCA GGTAATTATATAGACGTCTCTTTTTGCTCTCTTGTAGGTTACTGTACATT TTCGTCTCATTTCTCTTGAGGATGCCCTCCTGTTCCCTTTTTCCATCATT CACAAGCATATGTTTGCTTGTCCCATCAAGAGTGGGTCAACTTTCATGCT GCTCCTCCACCCGACACCTCCGTTTCCTGCTTTGTGCGGTACTGCGTCTA AAACTACTCACGGACAACAGTGACGTCTTTGATGCGGAAGTCCACCCACA TGTTCCTCCAGCCAGGACTTTGCCTGGGTTGCTCGTCAAATATACACAAA GGGTCATGGGTGTATTGGGTGCTTGGCATTGTAATGAGCGGATGACGTCA GCTTGTACTGCAAAGCATCCGAAACCAGCAGAAAGCGGATATCTTGTTCG CAGCGTCCCAATCCAGACCTCTGGAAAGGAGGTAAGGCTGTGGCCTGTTC GCCAATGTTGAGTTCGTATAGTCGACCACTGATTCCGATAAATGGGTAAT CCAAGCACCACTGAAAAGGCTGGTAGAGAACTTGGGATACTATTGTACTG TCATCAAGTGGGTAGCACATTAAGTCAGCGCGAAGTTATTCGGTTCCTTT ACAATCTGCACACTCGAGGTTCGACGCTTGTCCATGATGTATAACCATTT TTGAATGTTTTAATGTTTGAATTCGTAGATACGTGGATACGTTGTTCCGT CTGTGTTAGCATTCGCCAGAAAACAGTAACCGGCAAGGCCAGCTTACTAC CTACAACTGGCTAGAGGAGAAATCTGAACCATCTACCTTTGCTTACAGTA GGTAAAAGGTGTTGCCCTTGGCATCGCTTGCAATCTGCTACGTTGCACAT TCATGTTGCCATGCCCCTCTTTCGAGAGAGGCATACTGATCGGACCGTAT GTATCTCTACAAAAAAATAAGGGAATTCGGCGGCGTTTAGCTGATGCTGC TGGCGTGGATTCGGAAGGTTTGCAGCTGAAAGCCACACGGCCCGCTGATG CCCTGCTGATCATGTCCGGAAGCCACCCCCTCCGCCGTCTACCTTTGCTC AAACGCGCCTTCCTGGATGTTAACGATGGGATAAAGTTGGCATCGAGCAT GAGAGACAGGTCGGTAGGCGTGCCCTTGTGGATGTCTGGCGCCTTGCATT CAGCTGCGATTGTTTGTCCCTCTACTATGTTTCTGCTGTCAATGACTTTT GTTTCGAATGTTTTCTTATACCTTCCGAATCCTGCGATGCAGGGTGCAGC AGCTGAATGTTCGGGCAGAGCTGCACTCCAAGCGGGTGACTTTTGCACAC GATTCGTTATTTGTGTGAATTCTTCGGGCTAAAGATGAATTTTCGGACAG ACACCCTCCTCTCGCCTTGTACAAATTAACCAAGGTGTTTGGAACATTCA GATTTCTCCTACAAAGAAAAGTTGACCAATAGGGAAGATGCAGGCACGTT TTCCAATTTGTGTTGCTGGTTCTTTCATGGCCTTACAGGGGTCTTCTGCC AAAGGGGTTGACAATCTGGGCTGTAGCCAACCCGCTGACAGAAGCGCATG AGGCCGGCTTGGAGCGTCTTCGCCAAAAGGTCGAATTAGGAGCAGAAGTA ATCCTCACTCAACCCCCGTTAGCTTGGGAGCCGTTTGAACGGTGAGATTG GATCGACCACATCATATGATATGCCATTTCGCTCTTCAGCGTACGACACC TCAAGAGAACATATTTAGCCGAGCACTAGCCCCTTGGGGTGATGCCATCG CAGAGGTGAATAGACAGTCATCAATGATATGTTTCGCAACGTAACATGCT CCAAACTATCGCGGCATTCTCTAGGATTACGTTGAAGCGGTGCCTAGTAA GATACGAACCTACGCTAGCAACATGATTTGGACCATTCAACTGTCCCAGG TGGCTACGAGATATGCACGCAAGCAGGGCTCTCGAGGGAGTGCAAGATGA GGCACAAGCAAAGAACGAGAATGCTGTGTCGGCAACCATCAATCACAGGG TGGCTTCGAATGGAAAAGGGGCGAAACTTATCGTTGGAATGCCCGTGATC ACGTCCCGGTCAGGACTTGGCTTCTGGCTTGAACTGTGCGGGGTAGATAA ATGTGACCGTATCTGTAAGGAAGCATTTGAGACTTTCGAGAATCCGAAAA CTCTGACAACAGCAAGTCGTGCTGAATGTGCCGTTTCGAGCACCTCGACG GAATTGGACGCAATCTCCGGCGTGAAGACGGCGCACAGTAATATAACTGA AGGACCTCATCAGAATGGTGGTACTGATACGCATGTGGAATTAAAGGTTT CGCGGTATGGGCGAGCGTGGTTCGAGACAACCCTGTTGAAATTGAGGGAT TTGGACCATTTGGGGGTGGCGGGAATACATGTCATGTGTCCTGGGCCGGG GCCCAGGCGACGGGTAAAAGAGTTGATGGATGACGGAGTGTTTAATGTGT GGCGACGGTGATGAATCTAATATGCATGTGGTGCAGTGTGATTGCACCTA TCAACCAAGGTGGAGTAAAATCGGGGATATACTGCTCACATTTTCTTTCA CATGTAGGAGCCAAGGTTGAGGTTTATCGGCAACGGATGGAATGGTGCTT CAATGAATGCTGTCCAGGAGGTCGGGGTTAGAAACCCTGGGGCATTATGT CACGGACATGTGCCCTCCACCGCCACCTTTTGATAGTGACTGTGTTGGCA ACATCTGGGATTAACCTCCGTTTATATGTCCACATTTACCTCCATCAACA AAATGCAATAGAATATATCTCAATAGCCGCGCCACACGGACCTCCAAGTT GTGCAGAAAAATGTTGTACGCCGTCACGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig594:18647..21876+

>mRNA_H-paniculata_contig594.13574.1 ID=mRNA_H-paniculata_contig594.13574.1|Name=mRNA_H-paniculata_contig594.13574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2844bp|location=Sequence derived from alignment at H-paniculata_contig594:18647..21876+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGTATGGAAATTCTTGTATGTGCTTGCTCTGCTTAATGATTCCCT
TTCTCTATTTGTGACTAACGTCAGAATGATGTTGATGGTCTTATCTCCAC
AATCGAGCAGAAGGTGTGTTGCGTTGAGCAGATTGATGACGGTCCGCACG
TCGTTGAGCAAAGGATGTAAGGTCACCTATATGAACGAGCAGAAGATGGA
TTGTGGCAGGGGACTACATCACCAACAGTCGAATTTCGTCATCACTCTTG
AGCGTGCCGTCGTCGGGACGAAGGTTGACACAAATTGTGATGAGGAACTT
TGGAGCAGATGCCCGTATGGAAATTCTTGTATGTGCTTGCTCTGCTTAAT
GATTCCCTTTCTCTATTTGTGACTAACGTCAGAATGATGTTGATGGTCTT
ATCTCCACAATCGAGCAGAAGGTGTGTTGCGTTGAGCAGATTGATGACGG
TCCGCACGTCGTTGAGCAAAGGATGTAAGGTCACCTATATGAACGAGCAG
AAGATGGATTGTGGCAGGGGACTACATCACCAACAGTCGAATTTCGTCAT
CACTCTTGAGCGTGCCGTCGTCGGGACGAAGGTTGACACAAATTGTGATG
AGGAACTTTGGAGCAGTGACGTCTTTGATGCGGAAGTCCACCCACATGTT
CCTCCAGCCAGGACTTTGCCTGGGTTGCTCGTCAAATATACACAAAGGGT
CATGGGTGTATTGGGTGCTTGGCATTGTAATGAGCGGATGACGTCAGCTT
GTACTGCAAAGCATCCGAAACCAGCAGAAAGCGGATATCTTGTTCGCAGC
GTCCCAATCCAGACCTCTGGAAAGGAGTGACGTCTTTGATGCGGAAGTCC
ACCCACATGTTCCTCCAGCCAGGACTTTGCCTGGGTTGCTCGTCAAATAT
ACACAAAGGGTCATGGGTGTATTGGGTGCTTGGCATTGTAATGAGCGGAT
GACGTCAGCTTGTACTGCAAAGCATCCGAAACCAGCAGAAAGCGGATATC
TTGTTCGCAGCGTCCCAATCCAGACCTCTGGAAAGGAGGGAATTCGGCGG
CGTTTAGCTGATGCTGCTGGCGTGGATTCGGAAGGTTTGCAGCTGAAAGC
CACACGGCCCGCTGATGCCCTGCTGATCATGTCCGGAAGCCACCCCCTCC
GCCGTCTACCTTTGCTCAAACGCGCCTTCCTGGATGTTAACGATGGGATA
AAGTTGGCATCGAGCATGAGAGACAGGGAATTCGGCGGCGTTTAGCTGAT
GCTGCTGGCGTGGATTCGGAAGGTTTGCAGCTGAAAGCCACACGGCCCGC
TGATGCCCTGCTGATCATGTCCGGAAGCCACCCCCTCCGCCGTCTACCTT
TGCTCAAACGCGCCTTCCTGGATGTTAACGATGGGATAAAGTTGGCATCG
AGCATGAGAGACAGGGGTCTTCTGCCAAAGGGGTTGACAATCTGGGCTGT
AGCCAACCCGCTGACAGAAGCGCATGAGGCCGGCTTGGAGCGTCTTCGCC
AAAAGGTCGAATTAGGAGCAGAAGTAATCCTCACTCAACCCCCGTTAGCT
TGGGAGCCGTTTGAACGGGGTCTTCTGCCAAAGGGGTTGACAATCTGGGC
TGTAGCCAACCCGCTGACAGAAGCGCATGAGGCCGGCTTGGAGCGTCTTC
GCCAAAAGGTCGAATTAGGAGCAGAAGTAATCCTCACTCAACCCCCGTTA
GCTTGGGAGCCGTTTGAACGGTGGCTACGAGATATGCACGCAAGCAGGGC
TCTCGAGGGAGTGCAAGATGAGGCACAAGCAAAGAACGAGAATGCTGTGT
CGGCAACCATCAATCACAGGGTGGCTTCGAATGGAAAAGGGGCGAAACTT
ATCGTTGGAATGCCCGTGATCACGTCCCGGTCAGGACTTGGCTTCTGGCT
TGAACTGTGCGGGGTAGATAAATGTGACCGTATCTGTAAGGAAGCATTTG
AGACTTTCGAGAATCCGAAAACTCTGACAACAGCAAGTCGTGCTGAATGT
GCCGTTTCGAGCACCTCGACGGAATTGGACGCAATCTCCGGCGTGAAGAC
GGCGCACAGTAATATAACTGAAGGACCTCATCAGAATGGTGGTACTGATA
CGCATGTGGAATTAAAGGTTTCGCGGTATGGGCGAGCGTGGTTCGAGACA
ACCCTGTTGAAATTGAGGGATTTGGACCATTTGGGGGTGGCGGGAATACA
TGTCATGTGTCCTGGGCCGGGGCCCAGGCGACGGGTAAAAGAGTTGATGG
ATGACGGAGTGTTTAATGTGTGGCGACGGTGAGTGGCTACGAGATATGCA
CGCAAGCAGGGCTCTCGAGGGAGTGCAAGATGAGGCACAAGCAAAGAACG
AGAATGCTGTGTCGGCAACCATCAATCACAGGGTGGCTTCGAATGGAAAA
GGGGCGAAACTTATCGTTGGAATGCCCGTGATCACGTCCCGGTCAGGACT
TGGCTTCTGGCTTGAACTGTGCGGGGTAGATAAATGTGACCGTATCTGTA
AGGAAGCATTTGAGACTTTCGAGAATCCGAAAACTCTGACAACAGCAAGT
CGTGCTGAATGTGCCGTTTCGAGCACCTCGACGGAATTGGACGCAATCTC
CGGCGTGAAGACGGCGCACAGTAATATAACTGAAGGACCTCATCAGAATG
GTGGTACTGATACGCATGTGGAATTAAAGGTTTCGCGGTATGGGCGAGCG
TGGTTCGAGACAACCCTGTTGAAATTGAGGGATTTGGACCATTTGGGGGT
GGCGGGAATACATGTCATGTGTCCTGGGCCGGGGCCCAGGCGACGGGTAA
AAGAGTTGATGGATGACGGAGTGTTTAATGTGTGGCGACGGTGA
back to top