mRNA_H-paniculata_contig59335.13564.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59335.13564.1
Unique NamemRNA_H-paniculata_contig59335.13564.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig59335.13564.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 117 bits (292), Expect = 2.170e-27
Identity = 66/160 (41.25%), Postives = 95/160 (59.38%), Query Frame = 1
Query:    1 RSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGHR-EKVDEFKQNINQHFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAEGKVKISAPESADKPSEQKSGTSSEYRGMVGSLMYASTGARPEIAYAVHQAARRMEDP 477
            RS  DSC+Y  + +GG   LL+  YVDD++IA     ++D  K  ++  F MKD+G+ SR+LGI+++RDR  G + +SQ SY+ +V+KR+   E + V TP  G  K+SA +     SE        Y   VGS+MYA  G RP+IAYA+   +R M  P
Sbjct: 1014 RSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEV---SECIDTEKYPYSSAVGSVMYAMIGTRPDIAYAIGLISRFMSKP 1168          
BLAST of mRNA_H-paniculata_contig59335.13564.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 116 bits (291), Expect = 2.990e-27
Identity = 70/163 (42.94%), Postives = 93/163 (57.06%), Query Frame = 1
Query:    1 RSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAG-HREKVDEFKQNINQHFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAEGKVKISAPESADKPSEQK---SGTSSEYRGMVGSLMYASTGARPEIAYAVHQAARRMEDP 477
            R  +++CLY  RDD G+   LV VYVDDL++A   R  +DE K+ +   F+M+DLG  S +LGI +RRDRP   I +SQ  YI  VL RYG  +C+   TP    VK SA +  D  +       G S  Y  ++GS+MYA  G RP+IAY V    R   +P
Sbjct: 1155 RLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANP 1316          
BLAST of mRNA_H-paniculata_contig59335.13564.1 vs. uniprot
Match: A0A2K3N065_TRIPR (Copia LTR rider n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N065_TRIPR)

HSP 1 Score: 114 bits (286), Expect = 1.390e-26
Identity = 64/160 (40.00%), Postives = 97/160 (60.62%), Query Frame = 1
Query:    1 RSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGHR-EKVDEFKQNINQHFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAEGKVKISAPESADKPSEQKSGTSSEYRGMVGSLMYASTGARPEIAYAVHQAARRMEDP 477
            RS  D C+YF R   G + +++ +YVDD++IA +  E V   K  +N+ F MKDLG+ SR+LGI++RRDR    + +SQ +Y+R++L+++G    + V TP   + K+S  +      E+    S  Y  +VGSLMYA    RP+IAYAV   +R M +P
Sbjct:  969 RSQFDHCVYF-RFRPGNSFVILLLYVDDILIASNNVEDVTRVKAELNKEFDMKDLGAASRILGIDIRRDRKKSKLCLSQEAYLRKILEKFGMSNSKPVVTPTNPQFKLSIDQCPSTDVERAYMNSIPYANIVGSLMYAMVCTRPDIAYAVSLVSRYMANP 1127          
BLAST of mRNA_H-paniculata_contig59335.13564.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN)

HSP 1 Score: 111 bits (277), Expect = 2.250e-25
Identity = 60/160 (37.50%), Postives = 95/160 (59.38%), Query Frame = 1
Query:    1 RSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAG-HREKVDEFKQNINQHFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAEGKVKISAPESADKPSEQKSGTSSEYRGMVGSLMYASTGARPEIAYAVHQAARRMEDP 477
            R + D C+Y  +   G    LV +YVDD++IA  +++++ E K  ++  F MKDLG+  ++LG+E+RRDR  G +T+SQ  YI +VLKR+    C+ + TP     K+S+ E      +++  +   Y   VGSLMYA    RP++A+AV   +R M +P
Sbjct:  940 RCSYDECVYLRKFPDGSFLYLV-LYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLSSHECPKSEEDKEDMSLVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRYMHNP 1098          
BLAST of mRNA_H-paniculata_contig59335.13564.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 110 bits (274), Expect = 4.890e-25
Identity = 59/159 (37.11%), Postives = 96/159 (60.38%), Query Frame = 1
Query:    1 RSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGHREKVDEFKQNINQHFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAEGKVKISAPESADKPSEQKSGTSSEYRGMVGSLMYASTGARPEIAYAVHQAARRMEDP 477
            RS  D C+++ R++     LL+A+ VDD  IAG +  V  FK+ I+  F+M DLG +  +LGIEV+RDR   T+++SQ  YI  +L R+   + + + TP +    +S  +    P + +   +  YR ++GSLMYA+ G RP+IAYA+   ++ M++P
Sbjct:  286 RSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNP 444          
BLAST of mRNA_H-paniculata_contig59335.13564.1 vs. uniprot
Match: A0A1J3IYK5_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IYK5_NOCCA)

HSP 1 Score: 108 bits (270), Expect = 5.150e-25
Identity = 61/160 (38.12%), Postives = 93/160 (58.13%), Query Frame = 1
Query:    1 RSTTDSCLYFSRDDGGETNLLVAVYVDDLVIA-GHREKVDEFKQNINQHFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAEGKVKISAPESADKPSEQKSGTSSEYRGMVGSLMYASTGARPEIAYAVHQAARRMEDP 477
            RS  D C+Y  R+   E  + + +YVDD++IA G   ++   K +++  F MKD+G  SR+LG+++ RDR  GT+ +SQ SYI +VLK +G  E +   TP     ++ +    ++  E      + Y   VGSLMYA  G+RP+IAYAV   +R M +P
Sbjct:   65 RSEYDQCVYM-RNIHNEKAVYLLLYVDDILIASGSMSEIRSVKDSLSSKFEMKDMGKASRILGMDIIRDRERGTLQLSQESYIEKVLKTFGMTEAKPTTTPLATHFRLKSLTKDERKEEAVHMEDTPYASAVGSLMYAMIGSRPDIAYAVGVISRFMSNP 223          
BLAST of mRNA_H-paniculata_contig59335.13564.1 vs. uniprot
Match: A0A6D2J1R0_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J1R0_9BRAS)

HSP 1 Score: 109 bits (273), Expect = 7.790e-25
Identity = 63/160 (39.38%), Postives = 94/160 (58.75%), Query Frame = 1
Query:    1 RSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGHR-EKVDEFKQNINQHFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAEGKVKISAPESADKPSEQKSGTSSEYRGMVGSLMYASTGARPEIAYAVHQAARRMEDP 477
            RS  D+C+Y  + D G   LL+  YVD +++A     ++++ K+ ++  F MKDLG+ SR+LGI+++RDR  G + +SQ  Y+ +V+KR+   E + V TP  G  K+SA   A   SE        Y   VGSLMYA  G RP++AYA+   +R M  P
Sbjct: 1019 RSERDTCVYVKKVDQGFVYLLL--YVDGMLLAAKEMTEIEKLKKVLSSEFEMKDLGAASRILGIDIKRDRKEGVLWLSQSGYLGKVIKRFNMVEAKTVNTPMGGHFKLSAVSDA---SECVDTEKVPYSSAVGSLMYAMVGTRPDLAYAIGLVSRFMSKP 1173          
BLAST of mRNA_H-paniculata_contig59335.13564.1 vs. uniprot
Match: A0A7M5XDS1_9CNID (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XDS1_9CNID)

HSP 1 Score: 103 bits (256), Expect = 1.860e-24
Identity = 59/158 (37.34%), Postives = 90/158 (56.96%), Query Frame = 1
Query:   13 DSCLYFSRDDGGETN--LLVAVYVDDLVIAGHR-EKVDEFKQNINQHFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAEGKVKISAPESADKPSEQKSGTSSEYRGMVGSLMYASTGARPEIAYAVHQAARRMEDP 477
            D C+Y       +T   +++AVYVDD  +A +    ++  K+N+ + F M D G ++ +LG+ VRRDR  G I I Q +Y+R VL+R+G DECR + TP E           +KP   KS     Y+  +GSL+YAS G RP+++Y+V   ++ M  P
Sbjct:   35 DPCVYSKCIKESDTTSLIIIAVYVDDFTLASNDINLLEREKKNLAEKFDMVDQGEINYILGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMDECRPISTPMETGKSFEKLAPDEKPVNLKS-----YQAAIGSLIYASIGTRPDLSYSVGVLSQYMSHP 187          
BLAST of mRNA_H-paniculata_contig59335.13564.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 104 bits (259), Expect = 2.410e-24
Identity = 63/160 (39.38%), Postives = 95/160 (59.38%), Query Frame = 1
Query:    1 RSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGHREK-VDEFKQNINQHFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAEGKVKISAPESADKPSEQKSGTSSEYRGMVGSLMYASTGARPEIAYAVHQAARRMEDP 477
            RS  +SCLY  RD G E  L+VAVYVDDLVI+G  +  V EFKQ++   + + D G L+++LGI+V RD+ N    +SQ S+I++ L ++G D      TP +  V ++ P    K    +   ++ YR MVG+L + +   RPE+A+ VH+  R   +P
Sbjct:  100 RSGHESCLYIHRDGGNE--LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLT-PTPGFK---AELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINP 253          
BLAST of mRNA_H-paniculata_contig59335.13564.1 vs. uniprot
Match: Q9LVY5_ARATH (Copia-like retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LVY5_ARATH)

HSP 1 Score: 108 bits (269), Expect = 2.650e-24
Identity = 60/160 (37.50%), Postives = 98/160 (61.25%), Query Frame = 1
Query:    1 RSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGHR-EKVDEFKQNINQHFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAEGKVKISAPESADKPSEQKSGTSSEYRGMVGSLMYASTGARPEIAYAVHQAARRMEDP 477
            RS  DSC+Y  ++   +  + +  YVDD++IAG    +V++ K+ ++ HF MKD+G+ SR+LGI++ R+R  GT+ +SQ  Y+ +V++R+   + +GV TP     K+SA  + D   E        Y  +VGS+MYA  G RP++AYA+   +R M +P
Sbjct:  916 RSLHDSCVYV-KEVIPDQFVYLLFYVDDMLIAGKSMAEVNKVKEGLSLHFEMKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLSAVRNND---ESVDTEVCPYSSVVGSVMYAMIGNRPDVAYALGLVSRFMSNP 1071          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59335.13564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J3F7G4_NOCCA2.170e-2741.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2VT18_TRAPU2.990e-2742.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3N065_TRIPR1.390e-2640.00Copia LTR rider n=1 Tax=Trifolium pratense TaxID=5... [more]
A0A2U1MW82_ARTAN2.250e-2537.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A401GP19_9APHY4.890e-2537.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1J3IYK5_NOCCA5.150e-2538.13Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2J1R0_9BRAS7.790e-2539.38Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A7M5XDS1_9CNID1.860e-2437.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7S3Y6S2_HETAK2.410e-2439.38Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
Q9LVY5_ARATH2.650e-2437.50Copia-like retroelement pol polyprotein n=1 Tax=Ar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59335contigH-paniculata_contig59335:428..964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog164328.Phyra71704
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QHRW@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930651.286405-CDS-H-paniculata_contig59335:427..7861622930651.286405-CDS-H-paniculata_contig59335:427..786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59335 428..786 +
1691481389.9015067-CDS-H-paniculata_contig59335:427..7861691481389.9015067-CDS-H-paniculata_contig59335:427..786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59335 428..786 +
1622930651.3214347-CDS-H-paniculata_contig59335:846..9641622930651.3214347-CDS-H-paniculata_contig59335:846..964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59335 847..964 +
1691481389.9143918-CDS-H-paniculata_contig59335:846..9641691481389.9143918-CDS-H-paniculata_contig59335:846..964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59335 847..964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59335.13564.1prot_H-paniculata_contig59335.13564.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59335 428..964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59335.13564.1

>prot_H-paniculata_contig59335.13564.1 ID=prot_H-paniculata_contig59335.13564.1|Name=mRNA_H-paniculata_contig59335.13564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
RSTTDSCLYFSRDDGGETNLLVAVYVDDLVIAGHREKVDEFKQNINQHFR
MKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTP
AEGKVKISAPESADKPSEQKSGTSSEYRGMVGSLMYASTGARPEIAYAVH
QAARRMEDP
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mRNA from alignment at H-paniculata_contig59335:428..964+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59335.13564.1 ID=mRNA_H-paniculata_contig59335.13564.1|Name=mRNA_H-paniculata_contig59335.13564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at H-paniculata_contig59335:428..964+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTCCACTACCGACTCATGCTTGTACTTTTCCCGCGACGATGGGGGAGA GACAAACCTTCTGGTGGCCGTGTATGTTGACGACCTGGTCATTGCTGGCC ATCGTGAGAAAGTAGACGAGTTCAAGCAAAACATAAATCAGCATTTTAGG ATGAAAGACTTGGGCTCTCTCTCCCGCGTGTTGGGAATAGAAGTACGACG TGACCGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCTACATCCGCG AGGTACTAAAAAGATACGGTTTTGACGAGTGTCGAGGAGTACCCACCCCT GCAGAGGGAAAAGTGAAGATTTCGGCACCTGAGTCGGCCGACAAGCCCTC CGAACAGAAGTCACTTGGAGCTGTACCATCGGACATAGGCGCAGGAGTAC AAGAAAGCAGCAGAGGGAGAAGTGGCACCTCATCTGAATACAGAGGCATG GTAGGATCACTCATGTACGCCTCGACAGGAGCTAGACCTGAGATAGCATA TGCGGTACACCAAGCAGCACGTCGTATGGAGGACCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig59335:428..964+

>mRNA_H-paniculata_contig59335.13564.1 ID=mRNA_H-paniculata_contig59335.13564.1|Name=mRNA_H-paniculata_contig59335.13564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig59335:428..964+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTCCACTACCGACTCATGCTTGTACTTTTCCCGCGACGATGGGGGAGA
GACAAACCTTCTGGTGGCCGTGTATGTTGACGACCTGGTCATTGCTGGCC
ATCGTGAGAAAGTAGACGAGTTCAAGCAAAACATAAATCAGCATTTTAGG
ATGAAAGACTTGGGCTCTCTCTCCCGCGTGTTGGGAATAGAAGTACGACG
TGACCGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCTACATCCGCG
AGGTACTAAAAAGATACGGTTTTGACGAGTGTCGAGGAGTACCCACCCCT
GCAGAGGGAAAAGTGAAGATTTCGGCACCTGAGTCGGCCGACAAGCCCTC
CGAACAGAACGTTCCACTACCGACTCATGCTTGTACTTTTCCCGCGACGA
TGGGGGAGAGACAAACCTTCTGGTGGCCGTGTATGTTGACGACCTGGTCA
TTGCTGGCCATCGTGAGAAAGTAGACGAGTTCAAGCAAAACATAAATCAG
CATTTTAGGATGAAAGACTTGGGCTCTCTCTCCCGCGTGTTGGGAATAGA
AGTACGACGTGACCGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCT
ACATCCGCGAGGTACTAAAAAGATACGGTTTTGACGAGTGTCGAGGAGTA
CCCACCCCTGCAGAGGGAAAAGTGAAGATTTCGGCACCTGAGTCGGCCGA
CAAGCCCTCCGAACAGAAAAGTGGCACCTCATCTGAATACAGAGGCATGG
TAGGATCACTCATGTACGCCTCGACAGGAGCTAGACCTGAGATAGCATAT
GCGGTACACCAAGCAGCACGTCGTATGGAGGACCCAAAGTGGCACCTCAT
CTGAATACAGAGGCATGGTAGGATCACTCATGTACGCCTCGACAGGAGCT
AGACCTGAGATAGCATATGCGGTACACCAAGCAGCACGTCGTATGGAGGA
CCCA
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