prot_H-paniculata_contig59286.13558.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig59286.13558.1
Unique Nameprot_H-paniculata_contig59286.13558.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length84
Homology
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.210e-15
Identity = 40/80 (50.00%), Postives = 58/80 (72.50%), Query Frame = 0
Query:    3 GHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 81
            GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+   F+  PSAA++KTV+AVA ++
Sbjct:  133 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVATEK 212          
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5KQV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.430e-15
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 0
Query:    3 GHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 81
            GH KTGTFT V +  EG+K +  +++ ++KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:    7 GHDKTGTFTKVKELPEGRKAIGSKWMFAWKTNETGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 86          
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.480e-15
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 0
Query:    3 GHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVA 78
            GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+  + +  PSAA++KTV+AVA
Sbjct:  147 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVIAVA 223          
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 9.390e-15
Identity = 38/79 (48.10%), Postives = 57/79 (72.15%), Query Frame = 0
Query:    3 GHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQ 80
            GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FK+R++A G +QI  ID+   F+  PSAA++KTV+AVA +
Sbjct:    7 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATE 85          
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.120e-14
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 0
Query:    3 GHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 81
            GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:  133 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 212          
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.480e-14
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 0
Query:    3 GHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 81
            GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:  238 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 317          
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.490e-14
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 0
Query:    3 GHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 81
            GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:  483 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEK 562          
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5JGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.510e-14
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 0
Query:    3 GHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 81
            GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:  673 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 752          
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.520e-14
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 0
Query:    3 GHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 81
            GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:  384 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 463          
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.520e-14
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 0
Query:    3 GHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 81
            GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:  525 GHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 604          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNP9_9PHAE1.210e-1550.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQV1_9PHAE1.430e-1547.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K282_9PHAE3.480e-1550.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4A4_9PHAE9.390e-1548.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE1.120e-1448.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE2.480e-1448.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE2.490e-1448.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JGK7_9PHAE2.510e-1448.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE2.520e-1448.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE2.520e-1448.75Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..82
e-value: 4.9E-15
score: 55.8
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 9..82
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 9..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59286contigH-paniculata_contig59286:83..334 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59286.13558.1mRNA_H-paniculata_contig59286.13558.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig59286 83..358 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig59286.13558.1 ID=prot_H-paniculata_contig59286.13558.1|Name=mRNA_H-paniculata_contig59286.13558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MGGHAKTGTFTVVSDSEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGR
TQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEEL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like