mRNA_H-paniculata_contig59286.13558.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59286.13558.1
Unique NamemRNA_H-paniculata_contig59286.13558.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 5.660e-20
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 WEKAIQREMGGHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 267
            WE A+++E+ GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+   F+  PSAA++KTV+AVA ++
Sbjct:  123 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVATEK 212
[Close]
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 8.970e-20
Identity = 43/87 (49.43%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:    1 WEKAIQREMGGHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVA 258
            WE A+++E+ GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+  + +  PSAA++KTV+AVA
Sbjct:  137 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVIAVA 223
[Close]
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.660e-19
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 WEKAIQREMGGHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 267
            WE A+++E+ GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:  123 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 212
[Close]
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.090e-18
Identity = 40/90 (44.44%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 WEKAIQREMGGHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 267
            WE A+++E+  H KTGTFT V +  +G+K +  +++ S+KTN+ G +V FKAR+VA G ++I  ID+    + +PSAA++KTV+AVA ++
Sbjct:   15 WEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEK 104
[Close]
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5KEA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.120e-18
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 WEKAIQREMGGHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 267
            WE A+++E+ GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:   88 WEAAMRKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATRK 177
[Close]
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.600e-18
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 WEKAIQREMGGHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 267
            WE A+++E+ GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:  228 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 317
[Close]
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.600e-18
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 WEKAIQREMGGHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 267
            WE A+++E+ GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:  473 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEK 562
[Close]
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5JGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.620e-18
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 WEKAIQREMGGHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 267
            WE A+++E+ GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:  663 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 752
[Close]
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.620e-18
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 WEKAIQREMGGHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 267
            WE A+++E+ GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:  374 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 463
[Close]
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.630e-18
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 WEKAIQREMGGHAKTGTFTVVSD-SEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLAVAVQE 267
            WE A+++E+ GH KTGTFT V +  EG+K +  +++ S+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA++KTV+AVA ++
Sbjct:  515 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 604
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59286.13558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNP9_9PHAE5.660e-2048.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K282_9PHAE8.970e-2049.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE3.660e-1947.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LAZ3_9PHAE1.090e-1844.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEA7_9PHAE1.120e-1847.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE1.600e-1847.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE1.600e-1847.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JGK7_9PHAE1.620e-1847.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE1.620e-1847.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE1.630e-1847.78Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59286contigH-paniculata_contig59286:83..358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score63.5
Seed ortholog evalue5.3e-08
Seed eggNOG ortholog7425.NV19274-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size252
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930650.4625542-CDS-H-paniculata_contig59286:82..3341622930650.4625542-CDS-H-paniculata_contig59286:82..334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59286 83..334 -
1691481389.4871438-CDS-H-paniculata_contig59286:82..3341691481389.4871438-CDS-H-paniculata_contig59286:82..334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59286 83..334 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930650.4771538-UTR-H-paniculata_contig59286:334..3581622930650.4771538-UTR-H-paniculata_contig59286:334..358Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59286 335..358 -
1691481389.498304-UTR-H-paniculata_contig59286:334..3581691481389.498304-UTR-H-paniculata_contig59286:334..358Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59286 335..358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59286.13558.1prot_H-paniculata_contig59286.13558.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59286 83..334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59286.13558.1

>prot_H-paniculata_contig59286.13558.1 ID=prot_H-paniculata_contig59286.13558.1|Name=mRNA_H-paniculata_contig59286.13558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MGGHAKTGTFTVVSDSEGKKPLRDQFICSYKTNDMGNVVKFKARLVADGR
TQIQDIDYDEVFAPTPSAAAVKTVLAVAVQEEL*
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mRNA from alignment at H-paniculata_contig59286:83..358-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59286.13558.1 ID=mRNA_H-paniculata_contig59286.13558.1|Name=mRNA_H-paniculata_contig59286.13558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig59286:83..358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGAGAAGGCGATTCAAAGGGAAATGGGGGGCCATGCTAAGACGGGAAC
TTTTACCGTAGTAAGTGACAGTGAAGGAAAGAAACCGTTGAGGGACCAGT
TCATTTGTTCGTATAAAACTAACGACATGGGGAATGTGGTGAAGTTCAAG
GCAAGATTGGTAGCTGATGGAAGGACACAAATCCAAGACATAGACTACGA
TGAAGTTTTTGCCCCTACCCCTTCCGCCGCTGCTGTAAAGACGGTGTTAG
CCGTAGCAGTACAGGAGGAGTTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig59286:83..358-

>mRNA_H-paniculata_contig59286.13558.1 ID=mRNA_H-paniculata_contig59286.13558.1|Name=mRNA_H-paniculata_contig59286.13558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig59286:83..358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGGCCATGCTAAGACGGGAACTTTTACCGTAGTAAGTGACAGTGA
AGGAAAGAAACCGTTGAGGGACCAGTTCATTTGTTCGTATAAAACTAACG
ACATGGGGAATGTGGTGAAGTTCAAGGCAAGATTGGTAGCTGATGGAAGG
ACACAAATCCAAGACATAGACTACGATGAAGTTTTTGCCCCTACCCCTTC
CGCCGCTGCTGTAAAGACGGTGTTAGCCGTAGCAGTACAGGAGGAGTTAT
AAATGGGGGGCCATGCTAAGACGGGAACTTTTACCGTAGTAAGTGACAGT
GAAGGAAAGAAACCGTTGAGGGACCAGTTCATTTGTTCGTATAAAACTAA
CGACATGGGGAATGTGGTGAAGTTCAAGGCAAGATTGGTAGCTGATGGAA
GGACACAAATCCAAGACATAGACTACGATGAAGTTTTTGCCCCTACCCCT
TCCGCCGCTGCTGTAAAGACGGTGTTAGCCGTAGCAGTACAGGAGGAGTT
ATAA
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