mRNA_H-paniculata_contig59269.13555.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59269.13555.1
Unique NamemRNA_H-paniculata_contig59269.13555.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59269.13555.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.070e-17
Identity = 44/71 (61.97%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:   76 APLLKGPPQHPKSWRILHYALA----ARLGTSRFETVDTKVQAVFEASFGAMADDPDRQKRCVFLAVLAPG 276
            A  L+GPPQ PKSWR LH AL+     RLGT R   V  +V AV E S GAMADDP +Q+RC+FLAVLAPG
Sbjct:  407 AEALQGPPQDPKSWRTLHEALSKAMSTRLGTDRIMAVPKRVDAVLEVSLGAMADDPAKQQRCLFLAVLAPG 477
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59269.13555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6W2_ECTSI1.070e-1761.97NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59269contigH-paniculata_contig59269:225..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue8.3e-15
Seed eggNOG ortholog2880.D7G6W2
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons1
Model size276
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930649.9683185-CDS-H-paniculata_contig59269:224..5001622930649.9683185-CDS-H-paniculata_contig59269:224..500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59269 225..500 +
1691481389.3036518-CDS-H-paniculata_contig59269:224..5001691481389.3036518-CDS-H-paniculata_contig59269:224..500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59269 225..500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59269.13555.1prot_H-paniculata_contig59269.13555.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59269 225..500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59269.13555.1

>prot_H-paniculata_contig59269.13555.1 ID=prot_H-paniculata_contig59269.13555.1|Name=mRNA_H-paniculata_contig59269.13555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MTQTSISSFQVAADCGKLALALNLAAPLLKGPPQHPKSWRILHYALAARL
GTSRFETVDTKVQAVFEASFGAMADDPDRQKRCVFLAVLAPG
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mRNA from alignment at H-paniculata_contig59269:225..500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59269.13555.1 ID=mRNA_H-paniculata_contig59269.13555.1|Name=mRNA_H-paniculata_contig59269.13555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig59269:225..500+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACAAACGTCCATCTCGTCGTTCCAGGTCGCCGCTGACTGTGGGAA
GCTGGCTCTCGCGCTTAACCTCGCCGCGCCGCTGCTAAAGGGCCCTCCAC
AACATCCGAAGTCTTGGCGCATTTTACATTATGCTCTGGCAGCGCGATTG
GGGACGTCCCGTTTCGAGACTGTAGATACGAAAGTGCAAGCTGTCTTTGA
GGCAAGCTTCGGTGCCATGGCAGATGACCCCGACAGGCAGAAGAGATGCG
TGTTCCTTGCGGTACTTGCTCCGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig59269:225..500+

>mRNA_H-paniculata_contig59269.13555.1 ID=mRNA_H-paniculata_contig59269.13555.1|Name=mRNA_H-paniculata_contig59269.13555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig59269:225..500+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACAAACGTCCATCTCGTCGTTCCAGGTCGCCGCTGACTGTGGGAA
GCTGGCTCTCGCGCTTAACCTCGCCGCGCCGCTGCTAAAGGGCCCTCCAC
AACATCCGAAGTCTTGGCGCATTTTACATTATGCTCTGGCAGCGCGATTG
GGGACGTCCCGTTTCGAGACTGTAGATACGAAAGTGCAAGCTGTCTTTGA
GGCAAGCTTCGGTGCCATGGCAGATGACCCCGACAGGCAGAAGAGATGCG
TGTTCCTTGCGGTACTTGCTCCGGGTATGACACAAACGTCCATCTCGTCG
TTCCAGGTCGCCGCTGACTGTGGGAAGCTGGCTCTCGCGCTTAACCTCGC
CGCGCCGCTGCTAAAGGGCCCTCCACAACATCCGAAGTCTTGGCGCATTT
TACATTATGCTCTGGCAGCGCGATTGGGGACGTCCCGTTTCGAGACTGTA
GATACGAAAGTGCAAGCTGTCTTTGAGGCAAGCTTCGGTGCCATGGCAGA
TGACCCCGACAGGCAGAAGAGATGCGTGTTCCTTGCGGTACTTGCTCCGG
GT
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