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Homology
BLAST of mRNA_H-paniculata_contig5924.13550.1 vs. uniprot
Match: A0A6H5JEN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN2_9PHAE) HSP 1 Score: 120 bits (301), Expect = 2.240e-25 Identity = 52/110 (47.27%), Postives = 74/110 (67.27%), Query Frame = 1
Query: 4 QQGSWRTRHGDKTANKFFMVLIDRGIYDGGFNITTVNSDNPSTPPLQEIRDTWFELEWCSTTGRSSNMWGRGRNWRFGECHLLGSHEAFTRDMILYKVEEAELKQAQLYA 333
+ GSWR R D + F MVL+D+G+YDGGFN+ N+ PS P +QE+ D W EW TT + N+WGRGRN +FGE + +G H+ R +++YKV EAE+++AQ +A
Sbjct: 43 KDGSWRPRREDDVSQDFLMVLMDKGVYDGGFNLQVPNT-RPSAPSVQEVHDKWHSFEWVETTTSTCNVWGRGRNNQFGEFYTIGVHDPRQRRIVIYKVCEAEMRRAQAFA 151
BLAST of mRNA_H-paniculata_contig5924.13550.1 vs. uniprot
Match: D7FMQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMQ5_ECTSI) HSP 1 Score: 119 bits (299), Expect = 3.060e-25 Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 1
Query: 7 QGSWRTRHGDKTANKFFMVLIDRGIYDGGFNITTVNSDNPSTPPLQEIRDTWFELEWCSTTGRSSNMWGRGRNWRFGECHLLGSHEAFTRDMILYKVEEAELKQAQLYA 333
+GSWR R D+ + F MVL+D+G+YDGGFN+ N+ PS P +QE+ D W EW TT S N+WGRG N +FGE + +G H+ R +++YKV EAE+++AQ +A
Sbjct: 15 KGSWRARREDEVSQDFLMVLMDKGVYDGGFNLQLPNT-RPSAPSVQEVHDKWHSFEWVETTKSSCNVWGRGLNNQFGEFYTIGVHDPRQRRIVIYKVCEAEMRRAQAFA 122
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1883 |
| Cds size | 1176 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5924.13550.1 >prot_H-paniculata_contig5924.13550.1 ID=prot_H-paniculata_contig5924.13550.1|Name=mRNA_H-paniculata_contig5924.13550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=392bp
MVLIDRGIYDGGFNITTVNSDNPSTPPLQEIRDTWFELEWCSTTGRSSNM
WGRGRNWRFGECHLLGSHEAFTRDMILYKVEEAELKQAQLYARNADSICA
TVSTGQPRQEQQKQLQQCQETSCRSCGNSAYHSCSASINGASTAKRSRLC
SRAGEDIVPAYKEVIENGSSRTDGRPVNDKRRVYRPGHPAYNSIRVQHSK
TVYGSGAVSSSVNGDREKDGIDRSEVNRVQSVVGSKGKEVGPPPNKGRKG
QIPSSRGALPGFSGLFGDDDYEDPGRDTPKNVGSISNLANGVAKMNNERA
EILENFRVLKHSLENAKADFEQRITNAIREELAMLDAYKAIRRKREDLEA
GWKRANAGIEDVKLKTAELEENNHSRGVEMASSSRKSALSC* back to topmRNA from alignment at H-paniculata_contig5924:919..5527- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5924.13550.1 ID=mRNA_H-paniculata_contig5924.13550.1|Name=mRNA_H-paniculata_contig5924.13550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4609bp|location=Sequence derived from alignment at H-paniculata_contig5924:919..5527- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCCAACAGGGCTCATGGCGAACCAGGCACGGAGACAAAACGGCGAACAA
GTTCTTCATGGTTTTGATTGATCGTGGAATATACGACGGAGGTTTCAACA
TTACGACCGTGAACAGTGATAATCCTTCCACACCCCCCCTTCAAGAGTGA
GTTGTCACTGTAAACAACTGCCCTTTTGCATGTGCCGAGGTGCTCGACGC
CCAATGATGATGACATTGACGCCTCTCTATACGAACGGTGACGAAACGTA
TAGGTATCACCGCGCAAGTACACGTAAGTTTGTGGTATGAACTCCTTTCC
TCAGTTGTGACTATGTGGTGGTTGTCAAAGTTCTGAGTACTTTTGTGGCA
AAAGGGGGTGCTCAGAGTGCAGAGCGACGGTGCATCTCCGATCTTGTTCA
AGATTTACATGCAGATATCTGGAGTACAGGAACACGTTTGTCCAATTGCG
GGTTTGTTCTTCATCTATGGATCGGATCGTTTTCATGTATACTTCCTTGG
ACTGGTCACTGTTTGCGTGCTGTCAGGATCCGTGACACGTGGTTTGAGCT
CGAGTGGTGCTCAACGACGGGGCGGTCTTCAAACATGTGGGGACGCGGTC
GGAATTGGCGGTTCGGAGAGTGTCATCTGCTGGGGAGCCACGAAGCCTTC
ACGCGAGATATGATCCTTTATAAGGTTGAACCTTTCGCGTGCGGTGTCGC
TCGACTATTGTAGTACCATATATTTGGTCAGTTGAGAGCTATCGCCGATA
CAGATGGCAAGACTGCATCATCAGTGGAAAGCACAGAGGCCTGGATAATT
ATTTTCCGCCCTCCTCCCAAACTGTTGACCTGCTACGCAACGGAAAATCT
GTCACACAACTCTTGCGCTTGCCCCGCGCGTTGACGTTCGTCTAGGTCGA
GGAAGCCGAACTTAAGCAGGCTCAACTATACGCTAGGAATGCCGACAGCA
TATGTGCTACTGTATCAACAGGGCAGCCGCGGCAAGAGCAACAAAAACAG
CTGCAACAGTGCCAAGAAACGTCCTGCCGTAGCTGCGGAAACAGCGCTTA
CCACTCCTGTTCTGCGTCTATCAACGGTGCGTCCACCGCGAAGCGATCGC
GTCTCTGCTCTAGGGCGGGAGAAGATATCGTACCGGCCTACAAGGAAGTC
ATCGAGAATGGGTCTAGTCGGACGGATGGCCGTCCCGTGAACGACAAACG
CCGAGTATATCGCCCAGGTCATCCTGCGTACAACAGTATCAGAGTGCAAC
ACAGCAAGACGGTATACGGGAGCGGGGCTGTATCTTCCAGCGTTAACGGC
GATCGGGAGAAGGATGGCATCGACCGGAGTGAGGTCAATCGGGTACAGTC
TGTGGTTGGCTCAAAGGGCAAAGAGGTTGGGCCGCCACCGAACAAGGGAA
GGAAAGTGCGTGACGGGCGTGTAAGGTTCTAGCTAGATGTGCTAATGTAT
GTGACCAAATATCTTACTGTAGTCTTTCAGAGTCTTTTTAGTGCCATTGA
TGGATTCTTAGCTGATGTCTTGTTTGGAGGTTTGCTCTACAACGCAACGC
CAGTTGGCAACACGCAGCATACATCTGTTGTGTGTGATCCACTGGCAACA
TTGAACTCTTTCGTCATAAACGACTTGCATGATATGTGTGCCGTGTGAAC
ACGTTCATCAAGGTTGAATCAGCTTCGATTTTATGTGTTTTATATATCAA
GATATAGGAGAGTAGAGTACATACAAATGGCTGAGTTCAACAGCCTGGGT
GGAAAAGGGTAGAATGACGCGCACTCTGGTATGCACTGGACTGTAGTATC
ACATATTCTCAACATCAACGGTCACGTACGTCGCTTCCGTTCTGTTCACG
ATCTTGAATGAATGGACACAGGGGCAGATCCCGAGCAGTCGAGGGGCCTT
GCCCGGATTTTCTGGTTTATTCGGAGATGATGACTACGAGGACCCTGGTC
GAGACACGCCGAAGAACGTGGGCAGTATCTCCAACCTGGCGAACGGGGTC
GCGAAAATGAACAATGAAAGAGCGGAGATTTTGGAAAACTTCAGGGTGCT
CAAACATTCCCTAGAAAACGTGAGGGTTGTAAATTGAGTAAAAATGCTAC
CCGTGTACTGAGGTTCATTGGAATGCAGCTGTTGCTGTATGGAAGCGTGA
ATTTGATGTGCCAGATGTCTAATCAAGGGGTGCAAGTATATTGGAGAATA
ATCGAAAGCTATTTAAGGCCTTTTCGTGGCGTGTAACAAAGATAGTGCAG
GCATACCTTTTCGATGATGTTTTATAATTGCGTTTCCGATGGAGCCGCGG
TACTTGGAGCACTGTGAAAAGAAGTTGCGATGTATAGACATCTGAAAGCT
CCTACAATGACCATCTATTGGGGTATGCGACTGGACTATGGGAGTACGCG
AAACGTGTCTAGGGTTGGTTTTTTTCATCTGTTCCTCAGGCCGCAACCTG
TACGTTGGAACAACTGGATAGCACACGCACGATTCATCCAGGTGGTGTGC
GCGGTTCTCTTTGTGGGGCTGTGGGCACCTTTGAAGGCACACTGTTGGTT
GATTCTTGCGTGACTTGATTTCACCCCAGGCGAAGGCCGACTTTGAACAG
CGCATTACCAACGCCATAAGAGAAGAGCTGGCCATGCTCGACGCTTACAA
GGCTATTCGACGGAAGCGAGAAGATTTGGAGGCGGGCTGGAAACGCGCCA
ACGCCGGTATCGAGGTATAATATTCTTCAATGTGTCCTTTCATCTCTGAA
GTAGACCCTATGCGTGAGGATGATGTTGAAATCACTTGGAACGTTTCACC
CGGTGGACGAATACGAATACTTGGAGTAGTCGCGACGAGCAAAAAAAGTG
TTCGCTTCAGGGTCCAACATGAATATATGTATTTTATGTTCCGCGGACCA
TTTACGAGCGGTTCGAATAGTAATAAAACGGATAAACAGGGGTCAACACT
TGATTTTACGTACTTTCACATTCTGGACCTTGAAGCACATGATTTTGAAT
TGCCGCTGCGAGTGCTAGATCTCTTCGTATATGTCTGGGGGGTGGAACGT
TGTCAACCCCTATTTCGCGTGAGATAGCCTCTGTCTACAAACCACCAGGT
ATAGCCCAAAACATTTTACAACACACACAGAACAATCACTGAGTGAATGT
GCCAGAATCAACAAGCAAGCAATTTGAAATATATGTCAGTGTCAAAACCG
GATGGCAAATACGTGTATCGCGGAGACTACCCACCCCCCCCCTCGATCGT
GGAGCGGTACATATGCCGATTCAGGTCATTTCTTATCTCGTGATATTCTG
ATTCAGGACCTATGGCGTTGTGTCAGCGAGAGTATTATAACAAGAAGAGG
AGTTCTGTTGACCTATAAACCACATTTCGATGAGCTCGTCACACATGTAT
TGGGGCCACGTGCTTTATCAATCCAAAATTGTTTCACAGGATGGATGTTG
TACGAACCCCGCGAACCAAATGCGGAAATAAAGCATGAATATGCGGGACT
CTCAAGTGTACCACGATGTGGCAGTTGCTGCAGATTGAGATATTTATTCA
CTCGGATAGTAGAAGAGCTGGAGCGTTTCGCATGGTTCTGCAAACGCCTT
GGAACAAAAATATGATGTCTACTCTAGGAGCATAAGCTTGTGATGCATGT
ATCACAGATTTGGCGTGCGCGTGTGTTTCCCTTCCTGTCCCTTATGTATA
AACACCAATTATCGTTTGAATCTGGACAGCAACGTCGATAGAAGCGCCGA
CATGCAGATGAAAACAAGCAACATATGTGTGTGACATATCATACATCGAT
ACTCTCCAAGTGTGTATCGTGAAAACATTTTCTTAATTCTCGAATGCTAC
GTTCGCCGCACAGGATGTGAAGCTAAAGACAGCAGAACTGGAGGAAAATA
ATCACTCACGAGGAGTAGAGATGGCATCGAGCTCCAGAAAAAGTGCGCTC
AGCTGCTAACTTCAGCAGGATCCTGATGACCAACGTCTCTGGAAGCACGG
GACATTGCGTAGGTAAAAATGTGTTCATTGCGCACAACAAGGCCGCCAAC
TGTGGCGATTACGTTTAGATGCGGAAGGCCTTGCCAGAACACTCATGGCA
CCGGGCTGCGCCATCGTCTCACAAAACTATACATGGGGCATCACTGAAGC
TTCAGGCAAACATGATTGGTGTTGGTAAGGCCGCGATCGCCTCAAATAAG
CCGACTCCGATTATTTTGCCAATTCGTGAAAATGGCTCTCCGGCAGGTTT
GCATGTGTCTTTGTGTTTCCTGCCATCACTGTTACTCGTTTTTAGAGGCT
GCAATGAGAACATGGGACATCCGCACATGGCACGGCGTGAATTCTACCGA
ATGGAGCTCTGCGTAGCATTTTTGTGGCTGACGTGGGAACACCGACTTGT
ATACAACATATAACAAGATGAATGGCCTTGTACACCACCTTAGTAGCGAC
ACCTCGAGATGGAAACACCTCATTTTGGTCATTTGCTTTCGCCAGACCCC
AAACGTTGAATGTATCTGTCTGGCACATACTTGGCAGTTTTGTTTGATCC
GTTCTCTTTCTTTTTTGTGTGTGCCGTCTATCTGCCTGGGCTAGGTAGCA
AAATACTAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig5924:919..5527- >mRNA_H-paniculata_contig5924.13550.1 ID=mRNA_H-paniculata_contig5924.13550.1|Name=mRNA_H-paniculata_contig5924.13550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2352bp|location=Sequence derived from alignment at H-paniculata_contig5924:919..5527- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTTGATTGATCGTGGAATATACGACGGAGGTTTCAACATTACGAC
CGTGAACAGTGATAATCCTTCCACACCCCCCCTTCAAGAATGGTTTTGAT
TGATCGTGGAATATACGACGGAGGTTTCAACATTACGACCGTGAACAGTG
ATAATCCTTCCACACCCCCCCTTCAAGAGATCCGTGACACGTGGTTTGAG
CTCGAGTGGTGCTCAACGACGGGGCGGTCTTCAAACATGTGGGGACGCGG
TCGGAATTGGCGGTTCGGAGAGTGTCATCTGCTGGGGAGCCACGAAGCCT
TCACGCGAGATATGATCCTTTATAAGGATCCGTGACACGTGGTTTGAGCT
CGAGTGGTGCTCAACGACGGGGCGGTCTTCAAACATGTGGGGACGCGGTC
GGAATTGGCGGTTCGGAGAGTGTCATCTGCTGGGGAGCCACGAAGCCTTC
ACGCGAGATATGATCCTTTATAAGGTCGAGGAAGCCGAACTTAAGCAGGC
TCAACTATACGCTAGGAATGCCGACAGCATATGTGCTACTGTATCAACAG
GGCAGCCGCGGCAAGAGCAACAAAAACAGCTGCAACAGTGCCAAGAAACG
TCCTGCCGTAGCTGCGGAAACAGCGCTTACCACTCCTGTTCTGCGTCTAT
CAACGGTGCGTCCACCGCGAAGCGATCGCGTCTCTGCTCTAGGGCGGGAG
AAGATATCGTACCGGCCTACAAGGAAGTCATCGAGAATGGGTCTAGTCGG
ACGGATGGCCGTCCCGTGAACGACAAACGCCGAGTATATCGCCCAGGTCA
TCCTGCGTACAACAGTATCAGAGTGCAACACAGCAAGACGGTATACGGGA
GCGGGGCTGTATCTTCCAGCGTTAACGGCGATCGGGAGAAGGATGGCATC
GACCGGAGTGAGGTCAATCGGGTACAGTCTGTGGTTGGCTCAAAGGGCAA
AGAGGTTGGGCCGCCACCGAACAAGGGAAGGAAAGTCGAGGAAGCCGAAC
TTAAGCAGGCTCAACTATACGCTAGGAATGCCGACAGCATATGTGCTACT
GTATCAACAGGGCAGCCGCGGCAAGAGCAACAAAAACAGCTGCAACAGTG
CCAAGAAACGTCCTGCCGTAGCTGCGGAAACAGCGCTTACCACTCCTGTT
CTGCGTCTATCAACGGTGCGTCCACCGCGAAGCGATCGCGTCTCTGCTCT
AGGGCGGGAGAAGATATCGTACCGGCCTACAAGGAAGTCATCGAGAATGG
GTCTAGTCGGACGGATGGCCGTCCCGTGAACGACAAACGCCGAGTATATC
GCCCAGGTCATCCTGCGTACAACAGTATCAGAGTGCAACACAGCAAGACG
GTATACGGGAGCGGGGCTGTATCTTCCAGCGTTAACGGCGATCGGGAGAA
GGATGGCATCGACCGGAGTGAGGTCAATCGGGTACAGTCTGTGGTTGGCT
CAAAGGGCAAAGAGGTTGGGCCGCCACCGAACAAGGGAAGGAAAGGGCAG
ATCCCGAGCAGTCGAGGGGCCTTGCCCGGATTTTCTGGTTTATTCGGAGA
TGATGACTACGAGGACCCTGGTCGAGACACGCCGAAGAACGTGGGCAGTA
TCTCCAACCTGGCGAACGGGGTCGCGAAAATGAACAATGAAAGAGCGGAG
ATTTTGGAAAACTTCAGGGTGCTCAAACATTCCCTAGAAAACGGGCAGAT
CCCGAGCAGTCGAGGGGCCTTGCCCGGATTTTCTGGTTTATTCGGAGATG
ATGACTACGAGGACCCTGGTCGAGACACGCCGAAGAACGTGGGCAGTATC
TCCAACCTGGCGAACGGGGTCGCGAAAATGAACAATGAAAGAGCGGAGAT
TTTGGAAAACTTCAGGGTGCTCAAACATTCCCTAGAAAACGCGAAGGCCG
ACTTTGAACAGCGCATTACCAACGCCATAAGAGAAGAGCTGGCCATGCTC
GACGCTTACAAGGCTATTCGACGGAAGCGAGAAGATTTGGAGGCGGGCTG
GAAACGCGCCAACGCCGGTATCGAGGCGAAGGCCGACTTTGAACAGCGCA
TTACCAACGCCATAAGAGAAGAGCTGGCCATGCTCGACGCTTACAAGGCT
ATTCGACGGAAGCGAGAAGATTTGGAGGCGGGCTGGAAACGCGCCAACGC
CGGTATCGAGGATGTGAAGCTAAAGACAGCAGAACTGGAGGAAAATAATC
ACTCACGAGGAGTAGAGATGGCATCGAGCTCCAGAAAAAGTGCGCTCAGC
TGCTAAGATGTGAAGCTAAAGACAGCAGAACTGGAGGAAAATAATCACTC
ACGAGGAGTAGAGATGGCATCGAGCTCCAGAAAAAGTGCGCTCAGCTGCT
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