mRNA_H-paniculata_contig5918.13541.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5918.13541.1
Unique NamemRNA_H-paniculata_contig5918.13541.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5918.13541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5918contigH-paniculata_contig5918:2787..5959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1059
Cds size759
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5918.13541.1prot_H-paniculata_contig5918.13541.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5918 3086..5959 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930648.1166205-UTR-H-paniculata_contig5918:2786..30851622930648.1166205-UTR-H-paniculata_contig5918:2786..3085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5918 2787..3085 +
1691481388.4409301-UTR-H-paniculata_contig5918:2786..30851691481388.4409301-UTR-H-paniculata_contig5918:2786..3085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5918 2787..3085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930648.1353683-CDS-H-paniculata_contig5918:3085..33311622930648.1353683-CDS-H-paniculata_contig5918:3085..3331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5918 3086..3331 +
1691481388.451584-CDS-H-paniculata_contig5918:3085..33311691481388.451584-CDS-H-paniculata_contig5918:3085..3331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5918 3086..3331 +
1622930648.1526594-CDS-H-paniculata_contig5918:5446..59591622930648.1526594-CDS-H-paniculata_contig5918:5446..5959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5918 5447..5959 +
1691481388.461524-CDS-H-paniculata_contig5918:5446..59591691481388.461524-CDS-H-paniculata_contig5918:5446..5959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5918 5447..5959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5918.13541.1

>prot_H-paniculata_contig5918.13541.1 ID=prot_H-paniculata_contig5918.13541.1|Name=mRNA_H-paniculata_contig5918.13541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp
MIHEFCHLKAGQCRPPGYPAAVKALSIVLFLASSSLQQAKAQLSRPTRPG
LQMLTLQPLDLAEGEHNHLAGSTATISDDMPAGAERGTEDNMGTTTASCR
DWDCTGESGIPPTTQQNRWSRSLPELHELPSVLRGSGDGSRGGGGREDHL
VSSRSTDGGLSLSEDASGAVVADDTDESIKSGAGDNREIVADIEPGAPRH
RRPRTRVLLGTEPGVGGTVKSRADDKVEVQQEEVDGEDRADAKEAEAEAE
EKG
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mRNA from alignment at H-paniculata_contig5918:2787..5959+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5918.13541.1 ID=mRNA_H-paniculata_contig5918.13541.1|Name=mRNA_H-paniculata_contig5918.13541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3173bp|location=Sequence derived from alignment at H-paniculata_contig5918:2787..5959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCAGCATAGACACCCTCCGTGCGTCGCTCCCAGCTTTCCCCCCCTAAC
ACACCCTGCAAGTTGATCGTAACACACTCCGTGTAGAGGTGGATTTAAAT
AACTCCTTGCTCCACGTCCCTGATTGAGGAAAGGCACAACGCACCGGTGG
GGGTTGGCTGCTCAACGAAGTGCACAAGAGCGGACAGATCTAACAAATTG
ATTGTGATTCTAAAAGTCATCAGCCTGTAAGGGGTGGTGGGAGCCAGTGC
CAACAACTGACTGCAGAACAAGCAATTCAGAGGACGACTCAACACCATCA
TGATTCATGAATTTTGCCATTTGAAGGCAGGACAGTGTCGTCCCCCAGGC
TACCCAGCCGCGGTGAAGGCACTATCCATCGTTCTTTTCCTTGCGAGTTC
TTCCCTGCAGCAGGCGAAGGCACAGCTGTCTCGCCCAACTCGACCTGGTT
TGCAAATGCTTACGTTGCAACCTCTCGACCTGGCGGAGGGCGAACACAAC
CACCTAGCCGGGTCGACTGCTACCATCAGTGATGACATGCCGGCGGTGAG
AGGCTGCCTGCTAATAATTTGTGTTACCTTCCTTTTTTTGGGTTTCAGGT
TCATTTGGTGTGATGGGTGGTTTAATGCGGTATACTGATATACGGTGTGG
AGGTCTGAAATCTCTTGTGGTCGTTTGTTCGTACACCGTTCTTTTTTGCT
TCACAAAATTGATCCCCTTTCCTAGATGGACATAAATAATTATTTATTAA
CAAGACACAGACAGTGTGTACGCAGCAGGTATATCAGCGAGGCAGACCAT
AGACACCGCAAAGACACAACAAGTATGGGCTGAGGGCGAAAATATAATTT
ATTCATTTTGGGTGGCAAGGCGACCTGGAAGCAGACTCTCGTACACTACA
CATGTACATCACAGACATAGTCTTGGCATTCAAGAAAGAGAAAGTGGTGT
TTTGTGGCTTGCTGATACAGCAGGAGAACCATGGGAAATCCGTAACTTAT
GCAGGTATGTGAATAAGGCGCCGCTTAAACAACGAGGAGGTCTGGATGTG
AACGTTCCAAGTGTGAAAATTCATTCGGAAGGGCGGCGGGAAGATTATTT
AAAGTTTACCCGACTTGGTGATGAGAAGATTTCATCCCTGCTTGTTTAAT
TTGCTGCGAGAGTGTGGGGTTGTATGAGGTCTTGTCTTACGTCTACTGTT
CTTTATTGAACAGGATAGACCGGCTGCGTCTACAGTAGGTCGTGTCTTAG
GGAGGAACATGGAGAAACAACAATCATTTTCGTATTCAAGAATACGGTCT
GTTTTTTCATGAAGCAAATGAAATGTATTTTGCGTGAAGAGACGTTGTAG
AGGTGGTGTCTCTAGGTTAAGATGAGCAGGGTATGAACAGGGATGGTTCA
GTGGACCAGGTTGCCAAAAACTAACGACCTGAGACAGCAAGACTACATGC
GCACCAGCTCCAACCATAAACCTTACCCAGCTAGACGCGCCAGCCCTTGT
TTGTCCCGAATTTGTTCTGTATTGGCGGAGCTTGAGTATTATTCACGTCG
AATTGCAGTCACATTATTGCACACAGGGCGCCGTTTGTGCCCATTTGCCT
GTGCGCTGGCTTGCCCCACAGCGCACGATTAACGCTTGTTCTTCGTACAT
GGGCTGATTTTACCGAATCAAAGTACATGATGTTCCTATTCCCTTTGTTC
GCTGCAAGTAATGTTCAGTATTTGGACGAACACGATGTCGTGTTCGGTGT
TGGACGAAGTGATGGAATGGTTGACATGCCTGCTATGCTTCTTCATGACA
CGATCACATGAACATTCGCTTTCGCATTGGTGTATTGCTGCGTTGTCTGT
AGACGATTTCGTTCTGTCCGAAATGTCCCCCAGCAGAATTTTTGAAGAAA
CGCGATGAAATATTTCTGTGCAACAATAAGAAACGAAGAAGCTCCAAGAT
TGGTCGGGGCTTGGGCTATCAAAATCATCAAAACGAAAACGAAAACGAAA
GCTACATCTACCTTCATAACAAATGCTGGATAACCAGAGAGGTAGCTCTC
AGTTACCCACGTATGATGTGCTTTGTTTAGTTTAGCTGTCTCAAAAACTG
CAAGAGAAGTGCTTGTGTTTGACAACAACCGATGGTGAAAACGGTGGCCA
TGTACTATTGGCGGTTTCTGGCCAAAAATGAGCATACAATTTCTCGGTGA
TTGCTTGCCCTACGCATCAAGCCACTGCCACTGAATCGAACCAACTCGAT
TCTGGTGGACTGGCGATGCGTCTACTGGGAATGTCTAAAGGTGTGAATGA
ACGAGATGAGAGGTGAGGCACTCCTATTTCACTTCACCCATGGGGCTAGG
CGAATGTGTCCTATTAGGCGAGGCGCTCATTCATCTGTTGGTATTCTCGC
ACCACCTGCTTTCGCTGGTTATGAATAGACTCTTCTCTTTCAACATTGCA
CTTTCCCATGTACCCTGGATCATCCGGTGAAAATCAATAAATCACACTTG
CCTGTCGGTTCACCTTCAACTATTGTGTATTCAGCCGTTATTAAATGAAG
TAGTCTAGGTATTTACAGATATTTCCATATATATATATACATGCGTGTGT
AGCATGTCTATTTACAACCACAGAAAAACAAGAACATTTTTTTTTTTCCG
TATTACGTAGGGTGCCGAGAGAGGAACAGAGGACAACATGGGAACAACGA
CAGCAAGCTGTCGGGATTGGGACTGTACTGGAGAGTCAGGGATACCCCCT
ACTACGCAGCAAAATCGATGGTCTCGTTCGCTGCCGGAACTACACGAACT
TCCCTCTGTGCTGAGGGGTAGCGGCGACGGCAGCCGTGGTGGTGGCGGCC
GTGAAGATCACCTCGTCAGCAGCAGGAGTACCGATGGCGGGTTATCCCTA
TCGGAGGACGCATCCGGAGCGGTCGTTGCCGACGACACCGATGAAAGCAT
AAAAAGTGGAGCAGGAGATAACCGCGAAATCGTAGCTGACATTGAGCCTG
GGGCGCCGCGGCACCGTCGACCGAGGACAAGAGTTCTTCTAGGAACCGAA
CCCGGTGTTGGAGGAACAGTGAAATCGAGGGCTGACGACAAAGTCGAAGT
CCAGCAGGAGGAAGTAGACGGCGAGGACAGGGCAGACGCAAAGGAGGCGG
AGGCGGAGGCGGAGGAGAAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5918:2787..5959+

>mRNA_H-paniculata_contig5918.13541.1 ID=mRNA_H-paniculata_contig5918.13541.1|Name=mRNA_H-paniculata_contig5918.13541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig5918:2787..5959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTCATGAATTTTGCCATTTGAAGGCAGGACAGTGTCGTCCCCCAGG
CTACCCAGCCGCGGTGAAGGCACTATCCATCGTTCTTTTCCTTGCGAGTT
CTTCCCTGCAGCAGGCGAAGGCACAGCTGTCTCGCCCAACTCGACCTGGT
TTGCAAATGCTTACGTTGCAACCTCTCGACCTGGCGGAGGGCGAACACAA
CCACCTAGCCGGGTCGACTGCTACCATCAGTGATGACATGCCGGCGATGA
TTCATGAATTTTGCCATTTGAAGGCAGGACAGTGTCGTCCCCCAGGCTAC
CCAGCCGCGGTGAAGGCACTATCCATCGTTCTTTTCCTTGCGAGTTCTTC
CCTGCAGCAGGCGAAGGCACAGCTGTCTCGCCCAACTCGACCTGGTTTGC
AAATGCTTACGTTGCAACCTCTCGACCTGGCGGAGGGCGAACACAACCAC
CTAGCCGGGTCGACTGCTACCATCAGTGATGACATGCCGGCGGGTGCCGA
GAGAGGAACAGAGGACAACATGGGAACAACGACAGCAAGCTGTCGGGATT
GGGACTGTACTGGAGAGTCAGGGATACCCCCTACTACGCAGCAAAATCGA
TGGTCTCGTTCGCTGCCGGAACTACACGAACTTCCCTCTGTGCTGAGGGG
TAGCGGCGACGGCAGCCGTGGTGGTGGCGGCCGTGAAGATCACCTCGTCA
GCAGCAGGAGTACCGATGGCGGGTTATCCCTATCGGAGGACGCATCCGGA
GCGGTCGTTGCCGACGACACCGATGAAAGCATAAAAAGTGGAGCAGGAGA
TAACCGCGAAATCGTAGCTGACATTGAGCCTGGGGCGCCGCGGCACCGTC
GACCGAGGACAAGAGTTCTTCTAGGAACCGAACCCGGTGTTGGAGGAACA
GTGAAATCGAGGGCTGACGACAAAGTCGAAGTCCAGCAGGAGGAAGTAGA
CGGCGAGGACAGGGCAGACGCAAAGGAGGCGGAGGCGGAGGCGGAGGAGA
AGGGGGGTGCCGAGAGAGGAACAGAGGACAACATGGGAACAACGACAGCA
AGCTGTCGGGATTGGGACTGTACTGGAGAGTCAGGGATACCCCCTACTAC
GCAGCAAAATCGATGGTCTCGTTCGCTGCCGGAACTACACGAACTTCCCT
CTGTGCTGAGGGGTAGCGGCGACGGCAGCCGTGGTGGTGGCGGCCGTGAA
GATCACCTCGTCAGCAGCAGGAGTACCGATGGCGGGTTATCCCTATCGGA
GGACGCATCCGGAGCGGTCGTTGCCGACGACACCGATGAAAGCATAAAAA
GTGGAGCAGGAGATAACCGCGAAATCGTAGCTGACATTGAGCCTGGGGCG
CCGCGGCACCGTCGACCGAGGACAAGAGTTCTTCTAGGAACCGAACCCGG
TGTTGGAGGAACAGTGAAATCGAGGGCTGACGACAAAGTCGAAGTCCAGC
AGGAGGAAGTAGACGGCGAGGACAGGGCAGACGCAAAGGAGGCGGAGGCG
GAGGCGGAGGAGAAGGGG
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