mRNA_H-paniculata_contig5915.13539.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5915.13539.1
Unique NamemRNA_H-paniculata_contig5915.13539.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5915.13539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5915contigH-paniculata_contig5915:8496..11225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1129
Cds size1128
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930647.877441-CDS-H-paniculata_contig5915:8495..94721622930647.877441-CDS-H-paniculata_contig5915:8495..9472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5915 8496..9472 -
1691481388.3840618-CDS-H-paniculata_contig5915:8495..94721691481388.3840618-CDS-H-paniculata_contig5915:8495..9472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5915 8496..9472 -
1622930647.898693-CDS-H-paniculata_contig5915:11074..112251622930647.898693-CDS-H-paniculata_contig5915:11074..11225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5915 11075..11225 -
1691481388.3994486-CDS-H-paniculata_contig5915:11074..112251691481388.3994486-CDS-H-paniculata_contig5915:11074..11225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5915 11075..11225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5915.13539.1prot_H-paniculata_contig5915.13539.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5915 8496..11225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5915.13539.1

>prot_H-paniculata_contig5915.13539.1 ID=prot_H-paniculata_contig5915.13539.1|Name=mRNA_H-paniculata_contig5915.13539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=376bp
FLVNVDSKTSARYVDGVMKDALGVNYSAIPWNTSSSGEKFVPPLKNNATS
GNPQKTKASIERHAEEVFQSSASGKAFLLRVLNVGGRSSEISIDTYSYSG
EACNLIKTATEIETEDRHIDVGGGEGQEEAAPAPPFGTGSGLVSTTPAAS
SSSSACWSTATIRSNGTRRIDNNMESVVMPTATACSSNGDSSSNNSSSSN
SNTTIAACTTTANITAASLLPILPPSASLPEQSETLSPSSLIARRSSFFG
NRPGCSKWGIGTADAVPAAAEGSASFDSANPLGTGEYHRYTDSGASTAPL
SGYTIPSIGTAPLLSSSQPCVVVESNGLSVFDPAASAAIRDNMTSSDSQL
YGGGGTPLVGAGAANRAGTGGGNGVE
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mRNA from alignment at H-paniculata_contig5915:8496..11225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5915.13539.1 ID=mRNA_H-paniculata_contig5915.13539.1|Name=mRNA_H-paniculata_contig5915.13539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2730bp|location=Sequence derived from alignment at H-paniculata_contig5915:8496..11225- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCTGGTGAATGTGGACAGCAAAACGTCTGCTCGTTACGTAGATGGGGT
GATGAAGGACGCGCTGGGCGTGAACTACAGCGCCATTCCGTGGAACACGT
CTAGCTCGGGCGAGAAATTTGTCCCTCCGCTCAAGAACAACGCCACCTCT
GGTGAGGGGCCCGCCTGTGACGGTCGAGCTCGGGGAAGCGGGGAGCGGGG
GGCAGGGGGGGGGGTTCTTGTTGTACCCATGTTGAGGTTATATATATATA
TGCAGCGGACTTTAATCTTCAGTTGTACACATTTAAAAGGACAATTAGAT
AATGACCAATGAAGGGAGTACTCATGTTTTACATGCCGTCGTTGTCAGGT
CATTGGCCACGCGTCCTCGCGAAGACGAAAGTTTGTTCTTGTCAGAGCGA
TATCCGATGGTCAATCGCCCTTTTTCCTATGTGGCCAATAAATGTGGCTC
GAAATTGTTTCACCTATTCCGCTGGTGGCGCAGGGGGGAGGAGGGGAAGT
GGAGTGCCATGCCATTGTTGTACCCGTGTTGGGGTTATATAACCCACCGG
AAATTCTAGATCTGTGTTACATACTGATCTACTTATTTCTCCATAATGAC
TATTTTGCCTTATCAACCAACCAACCAACCAACAATCAGGAAGGAACATG
ACAAAGTGCCCCCCGTCCCCCCCCCCCTCCCTCCCCTCCAGCCGTCTAGG
AAACAAGTAATGGATTGCCTCGAACCCACCGCTCACCGCCTCACCACGTA
GCCCAGAGCTATGGTTGACACGTCCTTCTGTTGCATAGTTGGCGCTTTGT
TGTGCTCCAACAGGAGGAGAACCGTGTTGCGTTTATCGTTGAAATTAGAA
GTGCATCACATAAGGGGAGTGTCACTCGCGTGTGTGTTTACTACTGTGCA
TTGGCATGGCATCACCTTCAAAAATAGAAACACATGCCACCATGTGTCTA
TATATATATATATATATATATATATTATTTTTTCCCATTATAGTCGTAGG
CGGAGTCGTATTTCTGATGTGATCTGACGTCAACAAGATATGCTGTTGTA
CTTTGATTTACATACATGAAAAATATGTACTATTTACCTACATCTTGACC
TGTGATGTCCCTTGTTTTTACAGACCATATTACCAGGTAACCTGCTTTTT
CCCCCCATTCACTACCGTATTCCATACTGAAGTACAGTATCCCCACGCTG
AGTTATGGATGGATCCGTTATTGTCCATACGTCTTTGGCAAGATTTGAAC
CGAAAAAGGGAGGGACTGTTAGTAACAGTCAGTACAGCAAATTGTGCGGA
GCCTATTTTAGGCCGCTAATAGCCGGAAAGACAAAAAGATGCCCCAAAAT
CGGGTCCACCACTCGTATAGTGAAATTTAGTAACTCGTGATTTCTGTGCC
TTGCCAAAAAAGAACGGTCTGCAACATTCGACCTGGACTTGGATCCACCA
CTGTGTAGTTAAATCAAGTAACGTGTGACTTCACTAGTCTAGTGACTTCC
GTGCCCCTTTCCAAAAAAAAACGGTCTATGATTAAAACGGCCGAAAAGAT
TTGGCCCAAAATTGGATCCACTACTAGGGGTAATGTATTTTGTTTTCAAC
CGTAAAATTAAAATGCGAAGTGTACTACCATCAAATCGCGGCGTTTTTTT
TCTTTTTGCAATTTTTCCCTTCCTTTTTTTATTAATTAAAAACGCCCCAG
CAAGAACCAACGGTGATACCCATTATTTACCCATTTGAAAATCCCCCAAA
TAGGGAACCCACAAAAAACCAAGGCATCCATCGAGCGCCACGCAGAAGAA
GTGTTCCAATCTTCCGCGAGCGGGAAGGCGTTTCTCCTCCGGGTTCTCAA
TGTTGGGGGGCGTTCCTCGGAAATCTCGATCGACACGTACAGCTACAGCG
GAGAGGCTTGTAATCTGATCAAAACGGCCACAGAAATAGAGACGGAGGAC
AGGCATATCGATGTTGGTGGTGGGGAAGGGCAAGAGGAGGCAGCTCCTGC
TCCTCCGTTTGGCACCGGCAGCGGCTTGGTTTCGACGACCCCCGCTGCAT
CATCATCATCGTCAGCGTGTTGGTCAACAGCGACGATAAGGTCGAATGGT
ACAAGAAGGATCGACAATAACATGGAGTCAGTCGTGATGCCGACAGCAAC
AGCCTGTTCCTCCAATGGCGATAGTAGCAGCAACAATAGCAGCAGCAGCA
ATAGTAATACCACCATCGCGGCTTGCACAACAACGGCCAACATTACGGCG
GCGAGCTTGCTCCCAATATTACCACCTTCGGCATCACTGCCGGAGCAATC
AGAAACACTCTCGCCATCATCATTGATCGCGAGGCGCTCGAGCTTCTTTG
GGAATCGGCCAGGATGTAGCAAATGGGGAATCGGTACCGCTGACGCCGTC
CCCGCCGCCGCCGAAGGATCTGCGAGTTTCGACTCCGCCAACCCCCTCGG
GACTGGCGAATACCACCGTTATACTGACTCCGGGGCTAGCACCGCGCCAC
TGTCGGGGTATACTATTCCGAGCATTGGTACAGCACCCTTGTTGTCCTCG
TCACAGCCTTGTGTCGTCGTGGAAAGCAATGGCTTATCCGTATTCGACCC
TGCTGCTTCTGCTGCTATCAGGGACAATATGACCTCGTCTGATTCTCAGT
TGTACGGTGGTGGTGGGACACCCTTGGTTGGGGCGGGGGCAGCAAATAGG
GCAGGGACCGGGGGAGGAAACGGTGTCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5915:8496..11225-

>mRNA_H-paniculata_contig5915.13539.1 ID=mRNA_H-paniculata_contig5915.13539.1|Name=mRNA_H-paniculata_contig5915.13539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2256bp|location=Sequence derived from alignment at H-paniculata_contig5915:8496..11225- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCTGGTGAATGTGGACAGCAAAACGTCTGCTCGTTACGTAGATGGGGT
GATGAAGGACGCGCTGGGCGTGAACTACAGCGCCATTCCGTGGAACACGT
CTAGCTCGGGCGAGAAATTTGTCCCTCCGCTCAAGAACAACGCCACCTCT
GTTCCTGGTGAATGTGGACAGCAAAACGTCTGCTCGTTACGTAGATGGGG
TGATGAAGGACGCGCTGGGCGTGAACTACAGCGCCATTCCGTGGAACACG
TCTAGCTCGGGCGAGAAATTTGTCCCTCCGCTCAAGAACAACGCCACCTC
TGGGAACCCACAAAAAACCAAGGCATCCATCGAGCGCCACGCAGAAGAAG
TGTTCCAATCTTCCGCGAGCGGGAAGGCGTTTCTCCTCCGGGTTCTCAAT
GTTGGGGGGCGTTCCTCGGAAATCTCGATCGACACGTACAGCTACAGCGG
AGAGGCTTGTAATCTGATCAAAACGGCCACAGAAATAGAGACGGAGGACA
GGCATATCGATGTTGGTGGTGGGGAAGGGCAAGAGGAGGCAGCTCCTGCT
CCTCCGTTTGGCACCGGCAGCGGCTTGGTTTCGACGACCCCCGCTGCATC
ATCATCATCGTCAGCGTGTTGGTCAACAGCGACGATAAGGTCGAATGGTA
CAAGAAGGATCGACAATAACATGGAGTCAGTCGTGATGCCGACAGCAACA
GCCTGTTCCTCCAATGGCGATAGTAGCAGCAACAATAGCAGCAGCAGCAA
TAGTAATACCACCATCGCGGCTTGCACAACAACGGCCAACATTACGGCGG
CGAGCTTGCTCCCAATATTACCACCTTCGGCATCACTGCCGGAGCAATCA
GAAACACTCTCGCCATCATCATTGATCGCGAGGCGCTCGAGCTTCTTTGG
GAATCGGCCAGGATGTAGCAAATGGGGAATCGGTACCGCTGACGCCGTCC
CCGCCGCCGCCGAAGGATCTGCGAGTTTCGACTCCGCCAACCCCCTCGGG
ACTGGCGAATACCACCGTTATACTGACTCCGGGGCTAGCACCGCGCCACT
GTCGGGGTATACTATTCCGAGCATTGGTACAGCACCCTTGTTGTCCTCGT
CACAGCCTTGTGTCGTCGTGGAAAGCAATGGCTTATCCGTATTCGACCCT
GCTGCTTCTGCTGCTATCAGGGACAATATGACCTCGTCTGATTCTCAGTT
GTACGGTGGTGGTGGGACACCCTTGGTTGGGGCGGGGGCAGCAAATAGGG
CAGGGACCGGGGGAGGAAACGGTGTCGAGGGAACCCACAAAAAACCAAGG
CATCCATCGAGCGCCACGCAGAAGAAGTGTTCCAATCTTCCGCGAGCGGG
AAGGCGTTTCTCCTCCGGGTTCTCAATGTTGGGGGGCGTTCCTCGGAAAT
CTCGATCGACACGTACAGCTACAGCGGAGAGGCTTGTAATCTGATCAAAA
CGGCCACAGAAATAGAGACGGAGGACAGGCATATCGATGTTGGTGGTGGG
GAAGGGCAAGAGGAGGCAGCTCCTGCTCCTCCGTTTGGCACCGGCAGCGG
CTTGGTTTCGACGACCCCCGCTGCATCATCATCATCGTCAGCGTGTTGGT
CAACAGCGACGATAAGGTCGAATGGTACAAGAAGGATCGACAATAACATG
GAGTCAGTCGTGATGCCGACAGCAACAGCCTGTTCCTCCAATGGCGATAG
TAGCAGCAACAATAGCAGCAGCAGCAATAGTAATACCACCATCGCGGCTT
GCACAACAACGGCCAACATTACGGCGGCGAGCTTGCTCCCAATATTACCA
CCTTCGGCATCACTGCCGGAGCAATCAGAAACACTCTCGCCATCATCATT
GATCGCGAGGCGCTCGAGCTTCTTTGGGAATCGGCCAGGATGTAGCAAAT
GGGGAATCGGTACCGCTGACGCCGTCCCCGCCGCCGCCGAAGGATCTGCG
AGTTTCGACTCCGCCAACCCCCTCGGGACTGGCGAATACCACCGTTATAC
TGACTCCGGGGCTAGCACCGCGCCACTGTCGGGGTATACTATTCCGAGCA
TTGGTACAGCACCCTTGTTGTCCTCGTCACAGCCTTGTGTCGTCGTGGAA
AGCAATGGCTTATCCGTATTCGACCCTGCTGCTTCTGCTGCTATCAGGGA
CAATATGACCTCGTCTGATTCTCAGTTGTACGGTGGTGGTGGGACACCCT
TGGTTGGGGCGGGGGCAGCAAATAGGGCAGGGACCGGGGGAGGAAACGGT
GTCGAG
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