mRNA_H-paniculata_contig5913.13538.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5913.13538.1 vs. uniprot
Match: D8LU71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU71_ECTSI) HSP 1 Score: 368 bits (944), Expect = 4.060e-117 Identity = 199/353 (56.37%), Postives = 257/353 (72.80%), Query Frame = 1
Query: 1 YNLCCKSTHAFKHLFRERVPEAVAGLLEEMRATDNPAHYHPEVEVLCVAILGTLVEDAASVPKLIELRVTLSIVQGLGSRIIEVRLASLWALLLLSVP------ITRTTSSSSQGT------YRCRSWMLFCRQAVIECKVVSSLRTLWEDRAVSLTTEAQKHVQYAISTIVAHFFLDQAAAAAVVRQRGVELLAETMDFPDRGPFYQAMAL--QEESSDDEGSSPICKVSTLCAAVPTVYLPGIP---VQSVFEGVLSVFMKILPTYDDRVRDLCSLAMRCLAEKEDLLIDLIMEPRFTTVLRMLLDDSTSSGRAHIKAVLQRIVVLSAAPDIDDLSPALLDLTDNVFQKTA 1008
YNLCCKS A K FR+ +PEAV GLLEEMR + +YHP+VE++CVA+L T++E+AA VPKLIE VT +I QGL SRI+ VRLASLW+LLLL +P T T + +S G + R WMLFCR+AV+ECK VS+L TLWE A +L A++H++YAIST+ FF+D+ AA+A V+QRG ELLA TMDF A++L +++S DE SS + KVS LC AV TV+LP +P VQSV EG L VF+K+LPT + VRDLCSLAMRCL+ E+LL+DL+ +PRFTTVL++LL+++TS G HI+AVL+R+VVLSA P + DLSPALL+LTD VFQ+ A
Sbjct: 452 YNLCCKSGKATKLFFRKNIPEAVTGLLEEMRKAQDETYYHPQVEIMCVAVLSTMIENAALVPKLIERHVTPAITQGLDSRIVAVRLASLWSLLLLGIPGSGNNDDTTTAAPASAGKDHAGGGTQVRMWMLFCREAVVECKAVSALWTLWESTAATLEAGAREHMRYAISTVTRIFFMDKVAASAAVKQRGAELLALTMDFSADSRAVSALSLVGEDDSDYDETSSALVKVSALCCAVVTVHLPDMPAKAVQSVCEGCLDVFLKVLPTEEHEVRDLCSLAMRCLSGNEELLLDLLSDPRFTTVLKVLLEEATSVGGMHIEAVLKRVVVLSAVPGVADLSPALLNLTDYVFQRRA 804 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5913.13538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5913.13538.1 >prot_H-paniculata_contig5913.13538.1 ID=prot_H-paniculata_contig5913.13538.1|Name=mRNA_H-paniculata_contig5913.13538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=336bp YNLCCKSTHAFKHLFRERVPEAVAGLLEEMRATDNPAHYHPEVEVLCVAIback to top mRNA from alignment at H-paniculata_contig5913:276..6261+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5913.13538.1 ID=mRNA_H-paniculata_contig5913.13538.1|Name=mRNA_H-paniculata_contig5913.13538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5986bp|location=Sequence derived from alignment at H-paniculata_contig5913:276..6261+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5913:276..6261+ >mRNA_H-paniculata_contig5913.13538.1 ID=mRNA_H-paniculata_contig5913.13538.1|Name=mRNA_H-paniculata_contig5913.13538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2016bp|location=Sequence derived from alignment at H-paniculata_contig5913:276..6261+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |