mRNA_H-paniculata_contig59092.13536.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59092.13536.1
Unique NamemRNA_H-paniculata_contig59092.13536.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig59092.13536.1 vs. uniprot
Match: A0A6H5KQN2_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN2_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.910e-10
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = -2 
Query:  155 DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR--SGRNSNR 388
            DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ SYR  +GRN +R
Sbjct:  293 DPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWGRWKKRMTSYRRPTGRNPHR 376
[Close]
BLAST of mRNA_H-paniculata_contig59092.13536.1 vs. uniprot
Match: A0A6H5KUJ6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.110e-10
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = -2 
Query:  155 DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR--SGRNSNR 388
            DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ SYR  +GRN +R
Sbjct:  362 DPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWGRWKKRMTSYRRPTGRNPHR 445
[Close]
BLAST of mRNA_H-paniculata_contig59092.13536.1 vs. uniprot
Match: A0A6H5JGS1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS1_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.720e-9
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = -2 
Query:  155 DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR--SGRNSNR 388
            DPPL+TPL+SA +R++    ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ SYR  +GRN +R
Sbjct:  136 DPPLFTPLVSAEERRNPLRLYKGKCLNCLGEYHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWGRWKKRMTSYRRPTGRNPHR 219
[Close]
BLAST of mRNA_H-paniculata_contig59092.13536.1 vs. uniprot
Match: A0A6H5KTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX6_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.280e-8
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = -2 
Query:  176 DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR 388
            DPPL+TPL+SA +R+D    ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ S R
Sbjct:   71 DPPLFTPLVSAEERRDVLRLYKGKCLNCLGEDHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWGRWKKRMTSTR 145
[Close]
BLAST of mRNA_H-paniculata_contig59092.13536.1 vs. uniprot
Match: A0A6H5L3A2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.820e-8
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = -2 
Query:  155 DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR--SGRNSNR 388
            DPPL+TPL+SA +R++A   ++  CLNC     S + C     N  G ++ D+    +++   + RW +R+ SYR  SGRN +R
Sbjct:  659 DPPLFTPLVSAEERRNALRLYKGKCLNCLGEDRSFKSCNRGFVNATGSLSNDIKFRMEKDPTLWERWTKRMTSYRRPSGRNPHR 742
[Close]
BLAST of mRNA_H-paniculata_contig59092.13536.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.050e-7
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = -2 
Query:  182 DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRS 388
            DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ S
Sbjct:  444 DPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWDRWKKRMTS 516
[Close]
BLAST of mRNA_H-paniculata_contig59092.13536.1 vs. uniprot
Match: A0A6H5K4H4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.070e-7
Identity = 28/78 (35.90%), Postives = 46/78 (58.97%), Query Frame = -2 
Query:  167 DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYRSGR 388
            DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  G++N D+    +++   + RW++R+ S   GR
Sbjct:  362 DPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGFVNATGVLNNDIKFCMEKDPTLWGRWKKRMTSALVGR 439
[Close]
BLAST of mRNA_H-paniculata_contig59092.13536.1 vs. uniprot
Match: A0A6H5KHG2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG2_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.670e-6
Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = -2 
Query:  209 DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDLQRNEAAF 388
            DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+N D++     F
Sbjct:  159 DPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCYRGFVNATGLLNNDIKEGAREF 218
[Close]
BLAST of mRNA_H-paniculata_contig59092.13536.1 vs. uniprot
Match: A0A6H5L698_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L698_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.450e-5
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = -2 
Query:  227 DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDLQ 388
            DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+  D++
Sbjct:  351 DPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGSVNATGLLYNDIK 404
[Close]
BLAST of mRNA_H-paniculata_contig59092.13536.1 vs. uniprot
Match: A0A6H5JMV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV1_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.470e-5
Identity = 24/71 (33.80%), Postives = 41/71 (57.75%), Query Frame = -2 
Query:  188 DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERI 388
            DPPL+ P++SA +R++A   ++  CLNC    HS + C     N  GL+N D+    +++     RW++R+
Sbjct:  435 DPPLFIPVVSAEERRNALRVYKGKCLNCLGEDHSFKTCNHGFVNATGLLNNDIKFCMEKDPTLRGRWKKRM 505
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59092.13536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KQN2_9PHAE3.910e-1039.29NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KUJ6_9PHAE4.110e-1039.29Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JGS1_9PHAE3.720e-938.10Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KTX6_9PHAE4.280e-837.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3A2_9PHAE5.820e-836.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K8W4_9PHAE1.050e-736.99Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K4H4_9PHAE1.070e-735.90Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KHG2_9PHAE1.670e-640.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L698_9PHAE1.450e-540.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JMV1_9PHAE1.470e-533.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59092contigH-paniculata_contig59092:248..720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size473
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59092.13536.1prot_H-paniculata_contig59092.13536.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59092 255..611 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930647.3715196-UTR-H-paniculata_contig59092:247..2541622930647.3715196-UTR-H-paniculata_contig59092:247..254Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59092 248..254 +
1691481388.1607115-UTR-H-paniculata_contig59092:247..2541691481388.1607115-UTR-H-paniculata_contig59092:247..254Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59092 248..254 +
1622930647.4167874-UTR-H-paniculata_contig59092:611..7201622930647.4167874-UTR-H-paniculata_contig59092:611..720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59092 612..720 +
1691481388.1801674-UTR-H-paniculata_contig59092:611..7201691481388.1801674-UTR-H-paniculata_contig59092:611..720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59092 612..720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930647.3952909-CDS-H-paniculata_contig59092:254..6111622930647.3952909-CDS-H-paniculata_contig59092:254..611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59092 255..611 +
1691481388.17166-CDS-H-paniculata_contig59092:254..6111691481388.17166-CDS-H-paniculata_contig59092:254..611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59092 255..611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59092.13536.1

>prot_H-paniculata_contig59092.13536.1 ID=prot_H-paniculata_contig59092.13536.1|Name=mRNA_H-paniculata_contig59092.13536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MLSLTLTNLCAGVGGGASSVLVVRGITGVGMGITVVSSMVVIGIPTTRVP
VRITAGAVRADPFLPTAKCSFIALEVRVNESKHITARFSAFTNAVASGTA
IKAGVTVFRKSIFAISCR*
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mRNA from alignment at H-paniculata_contig59092:248..720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59092.13536.1 ID=mRNA_H-paniculata_contig59092.13536.1|Name=mRNA_H-paniculata_contig59092.13536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=473bp|location=Sequence derived from alignment at H-paniculata_contig59092:248..720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCGTCATGTTGAGCTTGACCCTGACGAACCTGTGTGCCGGCGTTGGAG
GAGGCGCGAGCTCCGTGCTGGTGGTGAGAGGAATCACCGGTGTTGGCATG
GGTATTACCGTGGTTTCGTCGATGGTGGTTATTGGAATTCCTACCACGCG
AGTGCCGGTTCGAATTACGGCCGGAGCGGTAAGAGCGGATCCTTTCCTGC
CAACGGCGAAATGCAGCTTCATTGCGTTGGAGGTCAGGGTTAATGAGTCC
AAACACATTACGGCAAGATTCAGTGCATTCACGAATGCTGTGGCCAGTGG
TACCGCAATTAAGGCAGGTGTTACGGTGTTTAGAAAAAGCATCTTTGCGA
TCAGCTGCAGATAATAGTGGGGTCCATAAAGGAGGGTCAGTAGTTTCCCA
ACGTGTCGTTGTAACAAAAACCTGATCCCACGTTTCTTCTGCAGCAGGCC
ACGCGTCGAACGCAGCCGTGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig59092:248..720+

>mRNA_H-paniculata_contig59092.13536.1 ID=mRNA_H-paniculata_contig59092.13536.1|Name=mRNA_H-paniculata_contig59092.13536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig59092:248..720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGAGCTTGACCCTGACGAACCTGTGTGCCGGCGTTGGAGGAGGCGC
GAGCTCCGTGCTGGTGGTGAGAGGAATCACCGGTGTTGGCATGGGTATTA
CCGTGGTTTCGTCGATGGTGGTTATTGGAATTCCTACCACGCGAGTGCCG
GTTCGAATTACGGCCGGAGCGGTAAGAGCGGATCCTTTCCTGCCAACGGC
GAAATGCAGCTTCATTGCGTTGGAGGTCAGGGTTAATGAGTCCAAACACA
TTACGGCAAGATTCAGTGCATTCACGAATGCTGTGGCCAGTGGTACCGCA
ATTAAGGCAGGTGTTACGGTGTTTAGAAAAAGCATCTTTGCGATCAGCTG
CAGATAAATGTTGAGCTTGACCCTGACGAACCTGTGTGCCGGCGTTGGAG
GAGGCGCGAGCTCCGTGCTGGTGGTGAGAGGAATCACCGGTGTTGGCATG
GGTATTACCGTGGTTTCGTCGATGGTGGTTATTGGAATTCCTACCACGCG
AGTGCCGGTTCGAATTACGGCCGGAGCGGTAAGAGCGGATCCTTTCCTGC
CAACGGCGAAATGCAGCTTCATTGCGTTGGAGGTCAGGGTTAATGAGTCC
AAACACATTACGGCAAGATTCAGTGCATTCACGAATGCTGTGGCCAGTGG
TACCGCAATTAAGGCAGGTGTTACGGTGTTTAGAAAAAGCATCTTTGCGA
TCAGCTGCAGATAA
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