mRNA_H-paniculata_contig5909.13535.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5909.13535.1
Unique NamemRNA_H-paniculata_contig5909.13535.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5909.13535.1 vs. uniprot
Match: D7FT66_ECTSI (TUG-UBL1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT66_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 2.090e-76
Identity = 130/182 (71.43%), Postives = 146/182 (80.22%), Query Frame = 1 
Query:  229 TTPLTILHDGHRKVFRVGANDNMSMVVQMACKDFGLDPLSASMLLTHKRAIVDLSQPFRFTGIPQNATLELTAEAPRGGSGTARSKGAAPGRYQQQVRVAMRLPGGRRVQGPFSADTSLMGLLQFWVDSGELNAGVLQQGPSLQFMRTAYGVGDLESTTLRSIGLLSGTAMFTLSLSAGVAA 774
            +T LTILH GHRKV R+GAND+MS VVQMAC++FGLD  S + +L HKR +VDLSQPFRFTGIPQNATLELT EAP       R K A       QVRVAMRLPGG RVQ PFSADTSL+GLLQ+W   GEL+AGVLQQGPSLQFMRTAYG GDL++TTLRSIGL+ G+AMFTLSLS+  AA
Sbjct:    3 STALTILHGGHRKVTRIGANDSMSTVVQMACREFGLDTGSPNWVLKHKRVVVDLSQPFRFTGIPQNATLELTEEAP------VRRKAAGSTSAGGQVRVAMRLPGGGRVQAPFSADTSLLGLLQWWAGRGELDAGVLQQGPSLQFMRTAYGAGDLDATTLRSIGLVRGSAMFTLSLSSPGAA 178
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BLAST of mRNA_H-paniculata_contig5909.13535.1 vs. uniprot
Match: A0A835YJ49_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ49_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.130e-24
Identity = 77/185 (41.62%), Postives = 104/185 (56.22%), Query Frame = 1 
Query:  226 MTTPLTILHDGHRKVFRVGANDNMSMVVQMACKDFGLDPLSASMLLTHKRAIVDLSQPFRFTGIPQNATLELTAEAPRGGSGTARSKGAAPGRYQQQVRVAMRLPGGRRVQGPFSADTSLMGLLQFWVDSGELNAGVLQQGPSLQFMRTAYGVGDLESTTLRSIGLLSGTAMFTLSLSA-GVAAP 777
            M++ LTIL  G RK  +VGAN  MS V+  AC   GL   +A   L HK+A+VDL+QPFR + IPQN TLEL   A    S T              VR+ +RL  G+R+QG +   ++L  +L   +    L A  +     LQFMRT Y   +L +TTL ++GL  G+AMFT+S+ A G +AP
Sbjct:    1 MSSSLTILWSGRRKAVKVGANSPMSAVLADACAAHGLTN-TAKYTLFHKKAVVDLTQPFRLSSIPQNTTLELREVAAPSASAT--------------VRIGVRLSTGQRLQGSYPVASTLQQVLVDLLTQNGLGADGVDSAV-LQFMRTTYAGPELAATTLAAMGLHGGSAMFTVSVGANGSSAP 169
[Close]
BLAST of mRNA_H-paniculata_contig5909.13535.1 vs. uniprot
Match: A0A1V9Z967_9STRA (UBX domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z967_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.240e-21
Identity = 69/175 (39.43%), Postives = 97/175 (55.43%), Query Frame = 1 
Query:  238 LTILHDGHRKVFRVGANDNMSMVVQMACKDFGLDPLSASMLLTHKRAIVDLSQPFRFTGIPQNATLELTAEAPRGGSGTARSKGAAPGRYQQQVRVAMRLPGGRRVQGPFSADTSLMGLLQFWVDSGELNAGVLQQGPSLQFMRTAYGVGDLESTTLRSIGLLSGTAMFTLSLSA 762
            L +L DGHRK   V A  +MS V++ AC+  G+D  +    L HK A+VDLS PFR TG+  NATL++  +  +GGS                VRV ++L  GRRVQG FS+  +L  +L      G+LN  +  +  S+ FMR      +L   TL+S+GL+SG+ MF +  SA
Sbjct:    3 LIVLLDGHRKKVPVTAGTSMSEVLRKACEAHGVD--ADRFELRHKNAVVDLSLPFRLTGVSSNATLDMVVK--KGGS-------------NDVVRVCVQLADGRRVQGSFSSGNTLATIL------GQLNVHIAPENDSINFMRRDIRSSELTELTLQSLGLVSGSVMFRVQSSA 154
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BLAST of mRNA_H-paniculata_contig5909.13535.1 vs. uniprot
Match: T0R6X6_SAPDV (UBX domain-containing protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R6X6_SAPDV)

HSP 1 Score: 100 bits (248), Expect = 2.690e-19
Identity = 74/182 (40.66%), Postives = 101/182 (55.49%), Query Frame = 1 
Query:  238 LTILHDGHRKVFRVGANDNMSMVVQMACKDFGLDPLSASMLLTHKRAIVDLSQPFRFTGIPQNATLELTAEAPRGGSGTARSKGAAPGRYQQQVRVAMRLPGGRRVQGPFSADTSLMGLLQFWVDSGELNAGVLQQGPSLQFMRTAYGVGDLESTTLRSIGLLSGTAMFTL--SLSAGVAAP 777
            LT+L DGHRK   V A  +MS V++ AC+   +D  +    L HK AIVDLS PFR TGI  NATL++ A+  RGG+                VRV ++L  GRRVQG F +  +L  +L       +L   +  +  SL FMR      +L+S TL+++GLLSG+ MF +  S S+ VA P
Sbjct:    3 LTVLLDGHRKKVPVTAGTSMSDVLRKACELHDVD--ADRHELRHKNAIVDLSLPFRLTGISSNATLDMMAK--RGGAN------------DPVVRVCVQLVDGRRVQGNFGSSLTLAAIL------AQLQIHLSPEYDSLNFMRRDIRGPELDSLTLQALGLLSGSGMFRVQSSTSSPVAPP 162
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BLAST of mRNA_H-paniculata_contig5909.13535.1 vs. uniprot
Match: A0A485KPD5_9STRA (Aste57867_10017 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPD5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.100e-15
Identity = 67/192 (34.90%), Postives = 97/192 (50.52%), Query Frame = 1 
Query:  229 TTPLTILHDGHRKVFRVGANDNMSMVVQMACKDFGLDPLSASMLLTHKRAIVDLSQPFRFTGIPQNATLELTAEAPRGGSGTARSKGAAPGRYQQQVRVAMRLPGGRRVQGPFSADTSLMGLLQFWVDSGELNAGVLQQGPSLQFMRTAYGVGDLESTTLRSIGLLSGTAMF--------TLSLSAGVAAPS 780
            T  + +LHDG+RK   V A   MS V++ AC+ FGL  +     L HK ++VDLS PFR +G+  NA +EL     +GG+              Q VRV ++   G+R QG FS   +L  +L       ELN  +     SL +MR      +    TL+++GLLSG+ MF        + S++  VAAP+
Sbjct:   19 TMSIVVLHDGYRKKIAVTAGTPMSDVLKKACEGFGLSNME-KFELRHKESLVDLSLPFRLSGVSVNAVVELREV--KGGAA-------------QSVRVCIQQADGQRQQGNFSPSKTLQDILL------ELNVSM---DNSLNYMRRELKPSEFSLLTLQTLGLLSGSVMFRTQSQSVSSTSIAQPVAAPA 185
[Close]
BLAST of mRNA_H-paniculata_contig5909.13535.1 vs. uniprot
Match: A0A397D135_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D135_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.550e-15
Identity = 63/166 (37.95%), Postives = 88/166 (53.01%), Query Frame = 1 
Query:  247 LHDGHRKVFRVGANDNMSMVVQMACKDFGLDPLSASMLLTHKRAIVDLSQPFRFTGIPQNATLELTAEAPRGGSGTARSKGAAPGRYQQQVRVAMRLPGGRRVQGPFSADTSLMGLLQFWVDSGELNAGVLQQGPSLQFMRTAYGVGDLESTTLRSIGLLSGTAMF 744
            L+DG RK   V A   MS V++ AC+ FGLD +   + L HK  +VDLS PFR +G+  NA LE+     + G+  A          Q  VRV ++L  GRRVQG F + T ++ +L   V  G      +    +L FMR      +  S TL+ +GLL+G+AMF
Sbjct:    6 LYDGRRKKIAVTAGTYMSDVLKKACEGFGLDNIER-LELRHKDKVVDLSIPFRLSGVSVNAVLEV-----KEGANAA----------QSDVRVGIQLMDGRRVQGSFRSSTRVIEIL---VQLG------IPTDITLNFMRRDLNPHEFASVTLQQLGLLTGSAMF 146
[Close]
BLAST of mRNA_H-paniculata_contig5909.13535.1 vs. uniprot
Match: K8ZCM3_NANGC (Tether containing ubx domain for glut4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZCM3_NANGC)

HSP 1 Score: 80.5 bits (197), Expect = 6.970e-15
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 1 
Query:  238 LTILHDGHRKVFRVGANDNMSMVVQMACKDFGLDPLS-ASMLLTHKRAIVDLSQPFRFTGIPQNATLELTAEAPRGGSGTARSKGAAPGRYQQQVRVAMRLPGGRRVQGPFSADTSLMGLL 597
            L +L +G +K  +   N  M   ++ AC++ G+   +    +L +K+  +DLSQPFRFTGIP NA LEL+        G   S+G        +VRV ++L GGRR+ G F  +TSL  +L
Sbjct:    3 LNVLFNGRKKQIKCSPNSTMQTALEHACREHGIGEAAWTGYILLYKKGPIDLSQPFRFTGIPNNAALELSETTSSSLPGPGGSRGVG-----HKVRVGLQLEGGRRLTGSFDPETSLADIL 118
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BLAST of mRNA_H-paniculata_contig5909.13535.1 vs. uniprot
Match: A0A397C114_9STRA (UBX domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C114_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.400e-15
Identity = 63/166 (37.95%), Postives = 88/166 (53.01%), Query Frame = 1 
Query:  247 LHDGHRKVFRVGANDNMSMVVQMACKDFGLDPLSASMLLTHKRAIVDLSQPFRFTGIPQNATLELTAEAPRGGSGTARSKGAAPGRYQQQVRVAMRLPGGRRVQGPFSADTSLMGLLQFWVDSGELNAGVLQQGPSLQFMRTAYGVGDLESTTLRSIGLLSGTAMF 744
            L+DG RK   V A   MS V++ AC+ FGLD +   + L HK  +VDLS PFR +G+  NA LE+     + G+  A          Q  VRV ++L  GRRVQG F + T ++ +L   V  G      +    +L FMR      +  S TL+ +GLL+G+AMF
Sbjct:    6 LYDGRRKKIAVTAGTYMSDVLKKACEGFGLDNIER-LELRHKDKVVDLSIPFRLSGVSVNAVLEV-----KEGANAA----------QSDVRVGIQLMDGRRVQGSFRSSTRVIEIL---VQLG------IPTDITLNFMRRDLNPHEFASVTLQQLGLLTGSAMF 146
[Close]
BLAST of mRNA_H-paniculata_contig5909.13535.1 vs. uniprot
Match: A0A4D9D7M0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7M0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.280e-14
Identity = 60/178 (33.71%), Postives = 93/178 (52.25%), Query Frame = 1 
Query:  238 LTILHDGHRKVFRVGANDNMSMVVQMACKDFGLDPLS-ASMLLTHKRAIVDLSQPFRFTGIPQNATLELTAEAPRGGSGTARSKGAAPGRYQQQVRVAMRLPGGRRVQGPFSADTSLMGLLQFWVD---------SGELNAGVLQQGPSLQ--FMRTAY-GVGDLESTTLRSIGLLSG 732
            L +L +G +K  +   N  M   ++ AC++ G+   +    +L +K+  +DLSQPFRFTGIP NA LEL+        G   S+GA       +VRV ++L GGRR+ G F  +TSL  +L              S  L+  + Q+G ++   ++R ++ G   L+ TTL S+GL  G
Sbjct:   37 LNVLFNGRKKQIKCSPNSTMQTALEHACREHGIGEAAWPGYVLLYKKGPIDLSQPFRFTGIPNNAALELSETPSSSLPGPGGSRGAG-----HKVRVGLQLEGGRRLTGSFDPETSLADILVQCSSPPSLPPSPLSPPLDPALFQEGSAIGIVYLRQSFQGWETLKRTTLASMGLRGG 209
[Close]
BLAST of mRNA_H-paniculata_contig5909.13535.1 vs. uniprot
Match: A0A8K1FI18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI18_PYTOL)

HSP 1 Score: 84.7 bits (208), Expect = 3.750e-14
Identity = 65/181 (35.91%), Postives = 86/181 (47.51%), Query Frame = 1 
Query:  238 LTILHDGHRKVFRVGANDNMSMVVQMACKDFGLDPLSASMLLTHKRAIVDLSQPFRFTGIPQNATLELTAEAPRGGSGTARSKGAAPGRYQQQVRVAMRLPGGRRVQGPFSADTSLMGLLQFWVDSGELNAGVLQQGPSLQFMRTAYGVGDLESTTLRSIGLLSGTAMFTLSLSAGVAAPS 780
            + I  +   K  RV     M  VV+ A + F L   +    LTHK   VDLS PFR TGI  NA LEL A A         S G  P     QVRV ++L  G+RVQ  F  D++L  +L  W               SL F++         STTL+ +GL+SG+AMF +  + G +AP+
Sbjct:    3 VNIEFNNQSKRIRVSPAMTMFQVVEAAREQFQLTDSAVQYELTHKNRPVDLSIPFRLTGISNNAALELKALA---------STGEVP-----QVRVCVQLTDGKRVQESFGYDSTLERILSAW------KLFPAADEFSLTFLQREIPYDTFASTTLKDLGLVSGSAMFRMQRAGGNSAPA 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5909.13535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT66_ECTSI2.090e-7671.43TUG-UBL1 domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YJ49_9STRA4.130e-2441.62UBX domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A1V9Z967_9STRA1.240e-2139.43UBX domain-containing protein n=1 Tax=Achlya hypog... [more]
T0R6X6_SAPDV2.690e-1940.66UBX domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A485KPD5_9STRA1.100e-1534.90Aste57867_10017 protein n=1 Tax=Aphanomyces stella... [more]
A0A397D135_9STRA4.550e-1537.95Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
K8ZCM3_NANGC6.970e-1537.19Tether containing ubx domain for glut4 (Fragment) ... [more]
A0A397C114_9STRA7.400e-1537.95UBX domain-containing protein n=11 Tax=Aphanomyces... [more]
A0A4D9D7M0_9STRA1.280e-1433.71Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8K1FI18_PYTOL3.750e-1435.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5909contigH-paniculata_contig5909:1590..8156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue3.7e-19
Seed eggNOG ortholog112098.XP_008604109.1
Preferred nameASPSCR1
KEGG koko:K15627
KEGG Pathwayko05202,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009893,GO:0009898,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010827,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019898,GO:0019899,GO:0019941,GO:0022411,GO:0030154,GO:0030163,GO:0030433,GO:0030435,GO:0030659,GO:0031090,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033036,GO:0033500,GO:0033554,GO:0034613,GO:0034762,GO:0034976,GO:0035265,GO:0036503,GO:0040007,GO:0042221,GO:0042592,GO:0042593,GO:0042886,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0043933,GO:0043934,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0046324,GO:0046907,GO:0048471,GO:0048518,GO:0048522,GO:0048589,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098552,GO:0098562,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.endosome to lysosome transport via multivesicular body sorting pathway
EggNOG OGsKOG2699@1,KOG2699@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons8
Model size1128
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5909.13535.1prot_H-paniculata_contig5909.13535.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5909 1815..7342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930647.1599257-UTR-H-paniculata_contig5909:1589..18141622930647.1599257-UTR-H-paniculata_contig5909:1589..1814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5909 1590..1814 +
1691481388.0476358-UTR-H-paniculata_contig5909:1589..18141691481388.0476358-UTR-H-paniculata_contig5909:1589..1814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5909 1590..1814 +
1622930647.2920048-UTR-H-paniculata_contig5909:7342..73491622930647.2920048-UTR-H-paniculata_contig5909:7342..7349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5909 7343..7349 +
1691481388.1440144-UTR-H-paniculata_contig5909:7342..73491691481388.1440144-UTR-H-paniculata_contig5909:7342..7349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5909 7343..7349 +
1622930647.3159375-UTR-H-paniculata_contig5909:7959..81561622930647.3159375-UTR-H-paniculata_contig5909:7959..8156Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5909 7960..8156 +
1691481388.1520205-UTR-H-paniculata_contig5909:7959..81561691481388.1520205-UTR-H-paniculata_contig5909:7959..8156Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5909 7960..8156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930647.1786544-CDS-H-paniculata_contig5909:1814..19011622930647.1786544-CDS-H-paniculata_contig5909:1814..1901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 1815..1901 +
1691481388.0624087-CDS-H-paniculata_contig5909:1814..19011691481388.0624087-CDS-H-paniculata_contig5909:1814..1901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 1815..1901 +
1622930647.1992657-CDS-H-paniculata_contig5909:3657..37891622930647.1992657-CDS-H-paniculata_contig5909:3657..3789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 3658..3789 +
1691481388.0712821-CDS-H-paniculata_contig5909:3657..37891691481388.0712821-CDS-H-paniculata_contig5909:3657..3789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 3658..3789 +
1622930647.2143278-CDS-H-paniculata_contig5909:4373..44391622930647.2143278-CDS-H-paniculata_contig5909:4373..4439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 4374..4439 +
1691481388.079406-CDS-H-paniculata_contig5909:4373..44391691481388.079406-CDS-H-paniculata_contig5909:4373..4439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 4374..4439 +
1622930647.225716-CDS-H-paniculata_contig5909:5350..54711622930647.225716-CDS-H-paniculata_contig5909:5350..5471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 5351..5471 +
1691481388.0875525-CDS-H-paniculata_contig5909:5350..54711691481388.0875525-CDS-H-paniculata_contig5909:5350..5471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 5351..5471 +
1622930647.2371411-CDS-H-paniculata_contig5909:6529..66261622930647.2371411-CDS-H-paniculata_contig5909:6529..6626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 6530..6626 +
1691481388.0975642-CDS-H-paniculata_contig5909:6529..66261691481388.0975642-CDS-H-paniculata_contig5909:6529..6626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 6530..6626 +
1622930647.2559204-CDS-H-paniculata_contig5909:7123..72681622930647.2559204-CDS-H-paniculata_contig5909:7123..7268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 7124..7268 +
1691481388.1223717-CDS-H-paniculata_contig5909:7123..72681691481388.1223717-CDS-H-paniculata_contig5909:7123..7268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 7124..7268 +
1622930647.2688808-CDS-H-paniculata_contig5909:7291..73421622930647.2688808-CDS-H-paniculata_contig5909:7291..7342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 7292..7342 +
1691481388.1355844-CDS-H-paniculata_contig5909:7291..73421691481388.1355844-CDS-H-paniculata_contig5909:7291..7342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5909 7292..7342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5909.13535.1

>prot_H-paniculata_contig5909.13535.1 ID=prot_H-paniculata_contig5909.13535.1|Name=mRNA_H-paniculata_contig5909.13535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
MTTPLTILHDGHRKVFRVGANDNMSMVVQMACKDFGLDPLSASMLLTHKR
AIVDLSQPFRFTGIPQNATLELTAEAPRGGSGTARSKGAAPGRYQQQVRV
AMRLPGGRRVQGPFSADTSLMGLLQFWVDSGELNAGVLQQGPSLQFMRTA
YGVGDLESTTLRSIGLLSGTAMFTLSLSAGVAAPSSSAASGGAGAGAGAG
AGAGAGAGAGAGAGAGCWCCCCRYYRGSCWIH*
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mRNA from alignment at H-paniculata_contig5909:1590..8156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5909.13535.1 ID=mRNA_H-paniculata_contig5909.13535.1|Name=mRNA_H-paniculata_contig5909.13535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6567bp|location=Sequence derived from alignment at H-paniculata_contig5909:1590..8156+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCTTCTTAGGTGTTCGGCTACACCCATCGTCCTGTTGTCGAGTGATAT
AGAGCCAGTGCGTCCTACTCCCTGACTACGGTAGCTGCACTATCGAGCTA
TTTACGCCATCGAGATAGAAGTTGCTGTTGCTAGTCGCTGCGGAACACTC
AAAGGTTGCTCTCTGTCGATCACGAGACAGCATACCGGCTGTTAAACAGC
TCACGAGGCAACCAGCCTGAGAATCATGACGACGCCTTTGACAATACTGC
ACGATGGGCACCGCAAGGTCTTCCGAGTGGGTGCCAACGACAACATGAGC
ATGGTGGTGCAGGTATCGTGTTTGCTTTGCGTACAGTTGATGTGTTTTAT
CAATCCACCATAGCTCATAGCGCTTGTGTAACTACAGCTTCTTGTTGTCA
GTGCATCACGCGACCCTATCAGACAGTAAATTTAGTATACAGACGTATTG
AGCACATTCGAACTCTCAACTTAGGTATACAGTAAAGTAAAACGTAGATG
TACTGACAGGAAACCAGAGCACAACGTTATTGATGTGCAGTGAGGTTGTT
CCACGAGTATCTACAGCAGCTTAAGTTTGGTTGATGTTGTAGGTGCAGCA
CGTGTGTGCAGGAGGCTGTAGCCCATTTGGTTGTTGCTCTACACTTGCGG
GACAAGATTTATCGTGAACGGTACGCCTGCGGTAACAACAAACCCTCGAC
CAGCACGAGCGCCGAAACCATGCTGCATGGGAGCGTTTCTTCTCAGGACG
CTGCTGACTACATTTCGAAAAACACGTTACCTTTACCTTGAGAGATCTCT
GTATGCAAAGCCCAACCAAAGCTTAACCCTCTCTCCCGGAGCAAAATATC
GTAAATAGTCAGCAGCGATCGGGCACAACGCCTTCAATGCCCACACCACT
CTTGGCCCTCCAACACCTCCCTCTGGAGTCGGCCAGTCATGAGGGTAAAC
CTTTTGTTTGATCAAAGCTAAGTGCAGGCCTACCCACCTGTTCGTGAAAC
ATGCTTCACTGAGGTTCTGCCACCGAAGTAAACTAGTTGAGTTTACTGTC
GTCCATAATTATTTGGTTGCAGCACGACGGATTGGGGGTATTCCTAATGG
AATTGGAGGCACCCACCCCCGTATTTACGCCCCACCCTCGCCCCTCGCCC
CTCGCCAAAATTTACTAGGGGGAGCGAGGCAAGATGACATCTGTTGCTTA
TGCTGCTTTGTCTAGGGCCCCATGACATGCAGTATTGCAGAGTACCGACC
TACTATTCTGACGCCGAATTTTGGAGTTGACGGATTTAACGGATCTACCG
CAACAGCAGGACAACAGGCATTTGCAAAATTAACGGAATGCGTTCTTTCG
AAAACGAAACAAGACAGGTACTCATTCACGTGGAGATGAGTAAACGGTTT
TCTTACAAAGCCGGGACCGTTTTGGCTGTTGCTTGTGGTGTCGTTGTCGT
GGGTCTGCCGTAGCTTTGCTACTTCCTGACTGCCGAATCCTGCAGACACA
TTCCTGCCCAACTGCTGGTGATGATTATTCTGCTTTCTGCCCTGAAAAAA
TCGAAGTACTTGTAGGAATGACGAGCTTTGTGCTCTATGATCAACGAGAC
CTTGCTGTATTATACTTCCGTCTAGAGGCATCTCTACTTGCAGACAGACG
AACGCAGTGTTTCCAGTCAGCCGGAACTCTCAGGATGAACTATGTCTGCA
TAATGATAAAACGATACGGGCACCGGGCGTGAAAAACGAACACCCCACTT
TCAATTAAGAAAGTGGGGGAATGTATTGGCATATACTGCATATACCACCG
TCCAATCGGCATCCGTGTTGCACTTGATCTCCCCTTGCAAGGCATCATCT
CAATCCTTCACCACAAAAGCGATTCACTTGTTCACATAAGGAAGAGGGAG
GGGGGGGGGGGTCGGACCTGCAAGCAGCCAGTACAACGTAAGAGCCATGT
ACTGCAGTATCAATAGCTTATCTTGTCCTTCTTTCTCCGGTTGGTAGGTG
GTGCGATGGTCATCAGCCCTATTTTTGCATTTATAACTGCTCTATCTGCG
CCACCGCGTTTCGCTCAGATGGCGTGCAAAGACTTTGGACTCGACCCGCT
GTCGGCGTCCATGTTGCTGACGCACAAGCGAGCGATCGTGGACCTCAGTC
AGCCCTTCCGGTTCACGGGCATCCCTCAAAATGCAACCCTCGAGCTCACG
GTAAGCGGGTACGGGAGGAGTTTTTTTGGAAATGCTGCAGTTGATGCCCG
TAGTGTCTGTACTGGTAATGAATGACCCATATTCCCAATCACTGGTGGGG
CGTGTTGCTGCCGGTGCTCACTCGGCGCATAGCTTGGGCTTTGTTCTGCG
CTCAGAGGGGGGTAGTGTTATAGTCTCGGGCCTCCAGGGCAGGTTCTGCA
GCTGGTCTGACTCTTTTTGCTAGCTTCTCCAGCACAGTGTCATGCCCTAC
ACCAACACGATAAAACATCGAACGGGGCAATGAAGTGGGGGAAAAAACGC
CCTAATAATCAATGTCCGCTATATTCGCTTCTTGATCACTCGAGACCTTT
GGTGTCTCTTCTGACAATGTGAACCGGTGCAGAGCTTTTCAGACTTGTTT
CGCAGACGCTTGTACACAAGAAGGTTGCTTTCGGCGAAAAGCTTCGTTTT
GGAAGAAGTAGCACGTTGGTGGAGGCCTCCGCCGAAACAGTAAGTATTTG
CTCGGATTCGTGCCGCTGTTTGGAGTATGCATAATAATGTATTGACGACT
GTGTCTGCACCGGCTTTCCCTGTGGGTTTGATAGGCTGAAGCGCCAAGGG
GAGGGAGCGGGACGGCGCGTTCCAAGGGCGCTGCTCCTGGTCGGTATCAG
GTACGAACGAGCTTATCTGATCTCTTTTTCTGGATTTGATTACCCATGGT
CATCGGTGGTATTTTTCATTTGCTTCTGCGGGGCATTTTGCAGGTGAAAT
TTTCCTGCCGCGTCTTGCACTTGTACTTGTACTGAAAGTAGAGTAATAGG
ATGCTGGCTAAGGAACCTTGAGGTGCCGGGAGCTTTTAGTATATCCAGAA
CTCACGTACGTGACGGCCAAAAAAAAACTCAGTGTACCGCAACACAAACT
CTGTATGGGCCATTTTCTGACGAGACTGGGCACACGAATCTGAAGATAGA
TGGAGCCAGCAAGGAGGAAGAGGATTTTTCGGTCTGAGGCGACATGTCTA
GCGTGACCTCGTTCCCCTCCGGTGGCGGACGTTTTGCTCGCGCTAAAGTG
CTCGCGACCAATATACGTATCTGTACACTGCCAGACTATCAGGCAGCCTC
TGCAAGTAATTGGCTTCATCTGTCCGAGCTGGCTTGTCAGGCCTCCCCGA
CATTGTTCTGAATGCATGACATCTGGAGATTTGCAGGGTACCATGTCGCC
TTTTTTCTTGGCGGAGCAATAGTGTGTACGGATGTGTACATTAGAAGTCA
CAAAAGTTTGTCCTGATGTGATGTGGCGATATGAGTAAAGTACTGCTGCT
CCTGATGGTTCATGATTTTTTTTTCGTTTCATCGTCACATTAGACTGTAC
TAAACTTTGGTCGAATTTTGTGTGGTAGAAGATACTGGTTTCCGTTGAAT
TACTTCATGACCAAAGGGCTTTTTTGCCTAACGTGGCAATAGCCAAACGA
GCAACCAAAACATGAAATCTTCTCTATATTATGAACAAGTCAACCATATA
TTCGGTGATCAAAATGAACTTTCTCAAATGTTCGGTTGCTGCCCGCCGTC
AAAAATAATAGCAACAGGTTCGCGTGGCGATGAGGCTTCCCGGGGGTCGT
CGCGTGCAGGGGCCCTTCAGTGCCGACACGTCTCTCATGGGCCTTTTGCA
GTTTTGGGTGGACAGCGGCGAGCTCAACGCAGGTTGTGTGCCGTGAAACG
CTACTTTACGTACCGCAAGCCGCCTCTCTTCTCTGGCTTTTTTCCCGTCT
CAAATAGGCGTTGAATTACGTTCTTCCCTGCTGCCGTGTGCTGTCGAAAA
CATTTATTTCGGTGGGGGGGGGGGGGCGTTGGTATCGGCTATGATGGCCC
CACTCGGGCGCATAGTATACGTCAATTGATTCAATCACATATGATTTGCT
ACACGCTGTTTGGATGATAAGGTCAAGGTGTGGTGTTTAATTCGTCGCCC
TTGGAGCAGCGGTAAAACCTACGAGCGTTTCGAGGTGTACCTCTCGGCCT
GAAAATGCTCATAGTAAGACCAGAGCACGCTCTGAAGGTCACCGCCAACG
GTAGATCCCTTCATTGGCTGCAGCCAGTCAGTCTGCCAGCGACCCTTTCT
TTTCTGTCGTGAAAAATAAAGTAGCATCGACGACCGGCTGGCCGCGCCTA
AAAGAGTGCATACTTTTTGTGTACATTACCCCCCAGTTGCTGACGGCGAG
GAGGTCTGGATATCTCAGTTCTGAAATACAGTTCTTCCGCCTCCTTCTCT
ATGCTGAAAAACTCGTAGTAGCAACAGCAGTGGAGCCATGACTACCCATG
CTCAAAGGCTCGCTGCGCTTGCATGTAATACAAAGCAGAAAAATCACTTT
CGAAAACTCCAGCTACGGCTATACCACCAACGCGACAACCACCTTGGGCC
ATTTTTTTGGAGGTGTTCGATCTTGTTTTTTTTTTCTACGATTGATTTTT
TTATTATAGAACTTGATGTAGTTCGCTATCTAGTTTGAAACAAAAGAGAT
GAGACGGCCGTTTTGATGAAATATTCAACGCCCAAAAAAACAGCCGTGAG
CGTATTAGTCGAATGAGTTTATTAATTAGATCCATGCTTGACCTGGTAAG
TGGCACAGGTCGTAGATACAGTGTGTAGTACGTGCTGAGCAACCAACCCC
GTTGTGCTCCAAATACGCCACGCTTTTTCTTTGTTGCGTCTGCACTTGGC
GGGATGTCCTCTACCTCGCTTGCCTTTGATTTGTGTATAGGTGTTTTACA
ACAAGGTCCTTCGTTGCAGTTTATGCGGACAGCCTACGGCGTGGGCGACT
TGGAGTCGACCACTCTGCGCTCAATTGGTCTTCTATCGTGAGAATCCTTG
ACAGCAAAAAATGATTTAGGTTCTGCTTTTTTTCAAAAAGCGTTTCCTTG
GTTTCTCTCTCTCTCTCTCTCTTTTGTGCTACCGCGCGCTGTGTATTTAG
TCACCGTGTTAATCTCTTTGTGAAAGACGGACGATCGGGGTTAGGACGGT
TACATTACAGGTATAGGCTCTTGTACTCCTTGCGCACGCTTGTTTTTCTC
AAGTTGTGTAGGTTTGTTAGTTCCGAGAAGAGGGCTTACTTTGTTGTGTC
CACAGTCGTAGTCAAAGAAACAATGGTACGCTCTGTTGGAAATTGTGTCA
GGCGCAGACTCTGCCCCCTGCCTGAATTTTATGATGAGACCACCCCTGTT
TTCTGTCTCGAGCTTGAGCTTGATAGGCTACTGTCGGTCTGTCCGATATA
ACGTCCGCGCCCCGCCTTTACCTCAACCCCTCACCCACACACCCCGTTCT
GGCCATGGTCGACATGTTTGGATTTTGCAAAAAGAGGAACTGCAATGTTC
ACACTGAGCTTGTCGGCTGGTGTGGCTGCACCATCGAGTAGTGCTGCTTC
TGGTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTG
CTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCT
AGTGCTGGTGCTGTTGCTGCCGCTACTACCGCGGAAGCTGTTGGATTCAT
TAGCCCGGAGGTAGGAGGATAGTGAGAAGATTGTTGTTGGTGTGGTCGGT
AGAGATAGTGCAATGTCTCCCTGGAGTTATAGAGGTTGCGGTACCTGTTG
ATTGATCCACTGCGGGACCGTCAGTACAACACCCGCCGCCGCCACCGGAG
AGATTCCTTGCCCATCTACTGTAGTCTTCTCTAAATATCCCGTTGTATGT
GTCAGCTTTGGCTCGGACCCTGCTGTTATCTGCTGCATAGTCATTGATGA
GCTACATTGGTGCTCATCGTTGTTGGTTTACGGGTCTACGGTGCCGTCAA
GCCTGCTATAATGGTAACGCCTGCTTGAATATAATTGTTATTCTCCGTCA
AGTACTACTGACTGTACTGTTGAAACAAACAGTCCTGTTCCTTCCCAAAG
TTCCATCCTGTATTCCAGCAGGTGAAAAGAATATACTTTTTTTTTTTTTT
TACTTTTCGGGTCATTATGCCCCAGGTATTCCCGAAACCCAGCCTGCCCT
GCTGCCACTCCCGAGATTGGCGTCCAATCATCAAACCGCCTAACCTTGCT
CTGAATTATATCACTCCACATGGCCAACAATCACCTACTTTCGGGTTTTT
TAATTAACGACGTACGATAGGACCAAGAAGCCCGGGATATCGCTCGCGCC
ATTGCACTGAGCACATCGGGTCTAGATACCATAGAGAAAGACAGCGCCAG
GGCGCAGCCTGTTTTGGCGACCCCTGCGGCAGGTGCTGATCTCGTAACTA
CTGTGGGAGCAGCAGGGGCACCCTGGGTTTCCAACGGGGTTGGGGAGGCA
GCGGCCGCGAGATGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5909:1590..8156+

>mRNA_H-paniculata_contig5909.13535.1 ID=mRNA_H-paniculata_contig5909.13535.1|Name=mRNA_H-paniculata_contig5909.13535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig5909:1590..8156+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGACGCCTTTGACAATACTGCACGATGGGCACCGCAAGGTCTTCCG
AGTGGGTGCCAACGACAACATGAGCATGGTGGTGCAGATGACGACGCCTT
TGACAATACTGCACGATGGGCACCGCAAGGTCTTCCGAGTGGGTGCCAAC
GACAACATGAGCATGGTGGTGCAGATGGCGTGCAAAGACTTTGGACTCGA
CCCGCTGTCGGCGTCCATGTTGCTGACGCACAAGCGAGCGATCGTGGACC
TCAGTCAGCCCTTCCGGTTCACGGGCATCCCTCAAAATGCAACCCTCGAG
CTCACGATGGCGTGCAAAGACTTTGGACTCGACCCGCTGTCGGCGTCCAT
GTTGCTGACGCACAAGCGAGCGATCGTGGACCTCAGTCAGCCCTTCCGGT
TCACGGGCATCCCTCAAAATGCAACCCTCGAGCTCACGGCTGAAGCGCCA
AGGGGAGGGAGCGGGACGGCGCGTTCCAAGGGCGCTGCTCCTGGTCGGTA
TCAGGCTGAAGCGCCAAGGGGAGGGAGCGGGACGGCGCGTTCCAAGGGCG
CTGCTCCTGGTCGGTATCAGCAACAGGTTCGCGTGGCGATGAGGCTTCCC
GGGGGTCGTCGCGTGCAGGGGCCCTTCAGTGCCGACACGTCTCTCATGGG
CCTTTTGCAGTTTTGGGTGGACAGCGGCGAGCTCAACGCAGCAACAGGTT
CGCGTGGCGATGAGGCTTCCCGGGGGTCGTCGCGTGCAGGGGCCCTTCAG
TGCCGACACGTCTCTCATGGGCCTTTTGCAGTTTTGGGTGGACAGCGGCG
AGCTCAACGCAGGTGTTTTACAACAAGGTCCTTCGTTGCAGTTTATGCGG
ACAGCCTACGGCGTGGGCGACTTGGAGTCGACCACTCTGCGCTCAATTGG
TCTTCTATCGTGTTTTACAACAAGGTCCTTCGTTGCAGTTTATGCGGACA
GCCTACGGCGTGGGCGACTTGGAGTCGACCACTCTGCGCTCAATTGGTCT
TCTATCAGGAACTGCAATGTTCACACTGAGCTTGTCGGCTGGTGTGGCTG
CACCATCGAGTAGTGCTGCTTCTGGTGGTGCTGGTGCTGGTGCTGGTGCT
GGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGG
TAGGAACTGCAATGTTCACACTGAGCTTGTCGGCTGGTGTGGCTGCACCA
TCGAGTAGTGCTGCTTCTGGTGGTGCTGGTGCTGGTGCTGGTGCTGGTGC
TGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTTGCT
GGTGCTGTTGCTGCCGCTACTACCGCGGAAGCTGTTGGATTCATTAGTGC
TGGTGCTGTTGCTGCCGCTACTACCGCGGAAGCTGTTGGATTCATTAG
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